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github.com/Bioprotocols/container-ontology

Container ontology for use with PAML (Protocol Activity Markup Language)
https://github.com/Bioprotocols/container-ontology

WIP: new implementation of the labware ontology based on owlready2 / EMMOntopy

markdoerr opened this pull request almost 2 years ago

Create LICENSE.md

photocyte opened this pull request over 2 years ago

License?

photocyte opened this issue over 2 years ago

Possible path to integration with relational databases

rpgoldman opened this issue over 2 years ago

explain the context attribute

jamesscottbrown opened this pull request over 2 years ago

fix link to Owlery API docs

jamesscottbrown opened this pull request over 2 years ago

Update to use owlery-client library from PyPi.

rpgoldman opened this pull request over 2 years ago

Container vs labware?

photocyte opened this issue over 2 years ago

Add GitHub action tests

rpgoldman opened this pull request over 2 years ago

Query formulator for the container server

rpgoldman opened this issue over 2 years ago

Graphical presentation of the container ontology

rpgoldman opened this issue over 2 years ago

Add entries for OpenTrons catalog items

rpgoldman opened this issue over 2 years ago

Add representation of compatibility with some PAML actions

rpgoldman opened this issue over 2 years ago

Generate documentation from container_api using Sphinx

rpgoldman opened this issue over 2 years ago

Need a way to specify container volume

bbartley opened this issue over 2 years ago

Get owlery-client from git repo.

rpgoldman opened this pull request almost 3 years ago

[bug] Python API Install Instructions

tsdobbs opened this issue almost 3 years ago

Pull OWLERY_CLIENT out of container ontology

rpgoldman opened this issue almost 3 years ago

[doc] Version dependency - Python 3.9

tsdobbs opened this issue almost 3 years ago

Is it possible to query a local working copy of the ontology?

bbartley opened this issue almost 3 years ago

Add license file

rpgoldman opened this issue almost 3 years ago

Is it possible to query for a general container specification given a particular container instance?

bbartley opened this issue almost 3 years ago

Title image with icon from Noun Project

rpgoldman opened this pull request almost 3 years ago

Create a pip package

bbartley opened this issue almost 3 years ago

Client API for container ontology server.

rpgoldman opened this pull request about 3 years ago

Use a less cumbersome temporary IRI prefix.

rpgoldman opened this pull request about 3 years ago

Extensive restructuring of container ontology.

rpgoldman opened this pull request about 3 years ago

Add an Owlery server

rpgoldman opened this pull request over 3 years ago

Replace poor ontology IRIs.

rpgoldman opened this pull request over 3 years ago

Add better temporary "parking" IRIs for the ontology