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github.com/Bioprotocols/labop

Laboratory Open Protocol (LabOP) Language
https://github.com/Bioprotocols/labop

Update labop.io about page to 2024-2025 elected terms

photocyte opened this pull request 3 months ago
Removed submodule for container-ontology

danbryce opened this pull request about 1 year ago
README.md: Installation description - labop/labop-check is not available anymore

markdoerr opened this issue about 1 year ago
Pylabrobot specialization rebase

danbryce opened this pull request about 1 year ago
Labop harness

danbryce opened this pull request about 1 year ago
harness for protocols

danbryce opened this pull request about 1 year ago
Update about.md for labop.io with current elected leadership

photocyte opened this pull request over 1 year ago
No monkey patch

danbryce opened this pull request over 1 year ago
commit to merge

LuHesketh opened this pull request over 1 year ago
commit all the recent changes made on the specialization file

LuHesketh opened this pull request over 1 year ago
Undocumented dependency on IPython

jakebeal opened this issue over 1 year ago
labop is not available on PyPi

jakebeal opened this issue over 1 year ago
Ecl

danbryce opened this pull request over 1 year ago
Link ContainerSpec to SampleCollections

bbartley opened this issue over 1 year ago
Serialization to HTML & .docx?

photocyte opened this issue over 1 year ago
Demo serial dilution to final protein assay standard curve protocol?

photocyte opened this issue over 1 year ago
Round trip WYSIWG LabOP editor, LLMs, Microsoft Word

photocyte opened this issue over 1 year ago
Update_autoprotocol

danbryce opened this pull request over 1 year ago
removed diluent clause

danbryce opened this pull request almost 2 years ago
Calibration-update

danbryce opened this pull request almost 2 years ago
Adds more robust handling of coordinates to markdown specialization

danbryce opened this pull request almost 2 years ago
Black pre commit

danbryce opened this pull request almost 2 years ago
Automated Dataset Generation

danbryce opened this pull request almost 2 years ago
Readme

danbryce opened this pull request almost 2 years ago
Remove jetc revert

danbryce opened this pull request almost 2 years ago
Calibration-data

danbryce opened this pull request almost 2 years ago
WIP: Readme (merge after #182)

danbryce opened this pull request almost 2 years ago
Propose SampleMetadata and Dataset classes

jakebeal opened this pull request almost 2 years ago
Associating measurement data and sample descriptions

jakebeal opened this issue almost 2 years ago
Ludox decision

danbryce opened this pull request almost 2 years ago
Revert "JETC revisions"

bbartley opened this pull request almost 2 years ago
JETC revisions

bbartley opened this pull request almost 2 years ago
Update index.md

photocyte opened this pull request about 2 years ago
Handling and/or propagation of uncertainties

photocyte opened this issue about 2 years ago
Opentrons: how to handle Transfer volumes that exceed the maximum volume of a pipette?

bbartley opened this issue about 2 years ago
Naming of Primitives

mszulcz-mitre opened this issue about 2 years ago
Documentation about the Python API?

mszulcz-mitre opened this issue about 2 years ago
Ot editor

danbryce opened this pull request about 2 years ago
Opentrons pcr example

bbartley opened this pull request about 2 years ago
Opentrons-nb

danbryce opened this pull request about 2 years ago
Fix pH calibration notebook

bbartley opened this pull request about 2 years ago
Opentrons-nb

danbryce opened this pull request about 2 years ago
Protocols to Support

danbryce opened this issue about 2 years ago
Igem tests

bbartley opened this pull request about 2 years ago
bioprotocols.org http vs https URLs

photocyte opened this issue about 2 years ago
Cannot compute values of unlinked Output Pins

bbartley opened this issue about 2 years ago
Unbound Parameters and ParameterValues not determined correctly

bbartley opened this issue about 2 years ago
Compute output

bbartley opened this pull request about 2 years ago
Catch unlinked output pins

bbartley opened this issue about 2 years ago
Refactoring PAML naming to LabOP

photocyte opened this issue over 2 years ago
Activate "Discussions" tab on this repo?

photocyte opened this issue over 2 years ago
HTML Specialization in addition to Markdown?

photocyte opened this issue over 2 years ago
Automatically add inputs for a CallBehaviorAction to the Document

bbartley opened this issue over 2 years ago
Update index.md

photocyte opened this pull request over 2 years ago
Update about page with current leadership and contact information

jakebeal opened this pull request over 2 years ago
Draft addition of governance material to website

jakebeal opened this pull request over 2 years ago
Ee-refactor

danbryce opened this pull request over 2 years ago
Key errors due to missing token values

bbartley opened this issue over 2 years ago
Save CI test files as artifacts

bbartley opened this issue over 2 years ago
Newlines in N-triples serializations are breaking tests based on file comparison

bbartley opened this issue over 2 years ago
Create quickstart.md

danbryce opened this pull request over 2 years ago
Interlab protocol

bbartley opened this pull request over 2 years ago
Demo miniprep protocol?

photocyte opened this issue over 2 years ago
Use Python class objects rather than raw URIs as arguments

bbartley opened this issue over 2 years ago
Documentation changes

cannin opened this pull request over 2 years ago
PAML suggestion: calculation of time / energy cost for a given protocol.

photocyte opened this issue over 2 years ago
PAML landing page?

photocyte opened this issue over 2 years ago
Culture Primitive: Include Orbital radius?

photocyte opened this issue over 2 years ago
Use a Single Python Code Documentation Style

cannin opened this issue over 2 years ago
README: enable syntax highlighting

jamesscottbrown opened this pull request over 2 years ago
Fix #138

bbartley opened this pull request over 2 years ago
ValueError: inferring DataArray dimensions from dictionary like ``coords`` is no longer supported. Use an explicit list of ``dims`` instead.

bbartley opened this issue over 2 years ago
Xarrays rebase

danbryce opened this pull request over 2 years ago
Support PAML

bbartley opened this pull request over 2 years ago
Turtle should be compatible with tyto

bbartley opened this issue over 2 years ago
Xarrays bryan

bbartley opened this pull request over 2 years ago
Create Full Golden Gate PAML Protocol

LuHesketh opened this pull request over 2 years ago
Cryptic failures when a required parameter is not specified for an action

bbartley opened this issue over 2 years ago
SampleArray, SampleMap, DataSet as Xarrays

danbryce opened this pull request over 2 years ago
Ignore build directory.

rpgoldman opened this pull request over 2 years ago
Is it necessary to import the ENTIRE OM-2 ontology?

rpgoldman opened this issue over 2 years ago
Verify inputs to an action have been added to the Document

bbartley opened this issue almost 3 years ago
Support Parameters with unbounded cardinality

bbartley opened this issue almost 3 years ago
uml.LiteralReal has no attribute 'value'

bbartley opened this issue almost 3 years ago
Generate output objects of execution edges

bbartley opened this issue almost 3 years ago
Remove redundant file.

rpgoldman opened this pull request almost 3 years ago
Add new GitHub action to test for bad OWL Restriction's

rpgoldman opened this pull request almost 3 years ago
Test on multiple python versions.

rpgoldman opened this pull request almost 3 years ago
Check multiple Python versions?

rpgoldman opened this issue almost 3 years ago
Should enabled_activity_node raise an exception when required inputs are missing?

bbartley opened this issue almost 3 years ago
Checking for required input Parameters fails

bbartley opened this issue almost 3 years ago
Fix container submodule

bbartley opened this pull request almost 3 years ago
Markdown export of demo notebook has incorrect(?) output

noahsprent opened this issue almost 3 years ago
Readme installation instructions give error as Git clone does not automatically fetch submodules

noahsprent opened this issue almost 3 years ago
Should `SampleCollection` be used to represent a single sample?

bbartley opened this issue almost 3 years ago
Indicate required vs optional Parameters for a Primitive

bbartley opened this issue almost 3 years ago
Representation of array data

jakebeal opened this issue almost 3 years ago
Add Markdown converter documentation

bbartley opened this pull request almost 3 years ago
Add execution test

bbartley opened this pull request almost 3 years ago
[request] Documentation for markdown execution engine

tsdobbs opened this issue almost 3 years ago