github.com/Bioprotocols/laboped commits | Ecosyste.ms: OpenCollective

Update README.md

2368eb51659a5422059b62ea1803510faa150da0 authored almost 3 years ago by Daniel Bryce <[email protected]>

Create README.md

62332b8c072ed96cade21477764a47612d565a26 authored almost 3 years ago by Daniel Bryce <[email protected]>

Merge pull request #18 from Bioprotocols/examples

Examples

ebea50168930fe8f92092d1d156b11fe47a2dd80 authored almost 3 years ago by Daniel Bryce <[email protected]>

Example for Mike Fero

e8a182979345803b59c7b68b93353f2b633916fd authored almost 3 years ago by Daniel Bryce <[email protected]>

Merge pull request #16 from Bioprotocols/disclaimer

added disclaimer modal

57a67fec3395c9289086f96ef8bc5c58368f375b authored almost 3 years ago by Daniel Bryce <[email protected]>

added disclaimer modal

fab47583c3a4aded134fd650f070defc5144a698 authored almost 3 years ago by Daniel Bryce <[email protected]>

Merge pull request #15 from Bioprotocols/ui-adjust

minor ui adjustments

934be523feb308c5cb7449b8f399557c30a5f194 authored almost 3 years ago by Daniel Bryce <[email protected]>

minor ui adjustments

fe18551b20d6a0bd667bd28f6c3344d4168a848f authored almost 3 years ago by Daniel Bryce <[email protected]>

Merge pull request #14 from Bioprotocols/output-serialize

Output serialize

dafc42a8f9e3b5a0beafb9c5f836c75ea1b83986 authored almost 3 years ago by Daniel Bryce <[email protected]>

Converting protocols, subprotocols, and protocol-primatives

fcf20d4f1b43aa5d739921b4f48ed5cf6ecd62ea authored almost 3 years ago by Daniel Bryce <[email protected]>

Fixed serialization for outputs

465e5c4f5fde2469f95a2e4a0a5ac976380682a5 authored almost 3 years ago by Daniel Bryce <[email protected]>

make App.css more specific

23ecab79551dddce67ed33ef1c3a973d9ef49b67 authored almost 3 years ago by Jack Ladwig <[email protected]>

Merge pull request #12 from Bioprotocols/gui-adjust

Gui adjust

15c2af781695ff58c6c36cd488cda83b021ea3a1 authored almost 3 years ago by Daniel Bryce <[email protected]>

fix context menu size

cb56966c51d4380423287234e91b26592abb2337 authored almost 3 years ago by Daniel Bryce <[email protected]>

ref from readme

8c106c90da3ba742b3ce4d0dd24f2966315fb9af authored almost 3 years ago by Daniel Bryce <[email protected]>

added user guide

1976c302a4f02fcfe3bddefc82130bd328852c8a authored almost 3 years ago by Daniel Bryce <[email protected]>

Merge pull request #10 from Bioprotocols/readme-update

Readme update and code cleanup

b41dfe9ee8340ad789b8d4c555683b7cd2d75f5b authored almost 3 years ago by jgladwig <[email protected]>

updates to Pipfile and add Pipfile.lock

9453f276a9d90e2e02db85e942cfa0490059a6cf authored almost 3 years ago by Jack Ladwig <[email protected]>

Update README.md

fix typo referencing backend/ when it should have been frontend/web/

ac7153a04a72e99f99a2725c37a854eb67152c85 authored almost 3 years ago by jgladwig <[email protected]>

cleanup errors in console

fae4ecb16b9eb7848b125c648254c80bc6fb71a4 authored almost 3 years ago by Daniel Bryce <[email protected]>

readme-update

16723d3d53b2095fe5afa7614d631447c09964d7 authored almost 3 years ago by Daniel Bryce <[email protected]>

readme instructions

d92c5fc3b333fcc16f852d4494a71a73477cbe15 authored almost 3 years ago by Daniel Bryce <[email protected]>

ludox protocol

e8a9769a845f43992c933d2622d7d76e28e92c73 authored almost 3 years ago by Daniel Bryce <[email protected]>

Merge pull request #9 from Bioprotocols/io-types

Support for inputs, outputs, and parameters.

@jgladwig I'm merging this because its part of a...

e4d00e23e712ea9f59e2ca54a2e5213c25b9d897 authored almost 3 years ago by Daniel Bryce <[email protected]>

fix issues with save io types

2737412a65e0279342f949e2601ae046d7506fad authored almost 3 years ago by Daniel Bryce <[email protected]>

Basic Version of Canned types.

ca67449aa8b86556f11ee64f20dcdc2791955a84 authored almost 3 years ago by Daniel Bryce <[email protected]>

ui logic and parameter components

965ac48da27c2a07882f46439c48893f415ae93e authored almost 3 years ago by Daniel Bryce <[email protected]>

allow loading rete graph files from local filesystem

9d5b5683b5a84b49f31b49d14a357454ca061572 authored almost 3 years ago by Jack Ladwig <[email protected]>

save current protocol when making a new protocol

there is more that can be considered here but at least
avoid losing state when making a new prot...

6c57a42803a2acbeee1f9faf9185e76378ac83fa authored almost 3 years ago by Jack Ladwig <[email protected]>

add rebuilding primitives modal

9891a785f19381c34eec97ac60a39502be4a94c1 authored almost 3 years ago by Jack Ladwig <[email protected]>

misc bug fixes and improvements:

- move download to a lazy rdf generation on request
- fix(?) race condition in component loading...

f834e70c98a0b3e56c1a04dcf058e9dc0b31a897 authored almost 3 years ago by Jack Ladwig <[email protected]>

call saveProtocol with name and not object

74ac36a55e6e6273717e873de337308251929a3b authored almost 3 years ago by Jack Ladwig <[email protected]>

consolidated menu per protocol

6af210b4c17a343f234bd27beda16a1a23bd65ce authored almost 3 years ago by Daniel Bryce <[email protected]>

fix duplicate generation of primitives

ba107dc5d22e2e351e22695eb52cb520e35655fd authored almost 3 years ago by Daniel Bryce <[email protected]>

checkpoint for fixing primitives

b302bb1f824cafde4a332fec74646d9dd2cba27f authored almost 3 years ago by Daniel Bryce <[email protected]>

saving names for input and output

49bfcf84e7ce6cbe6f26a738ff91bb2748cae3b9 authored almost 3 years ago by Daniel Bryce <[email protected]>

wrap up saving/deleting/renaming

also attempt to reopen the previous protocol on reload

ba81fc35e3eb151d6ef97da85c76be2727606b7a authored almost 3 years ago by Jack Ladwig <[email protected]>

initial pass add adding per protocol dropdown items for:

- open
- save
- name
- delete

79c448360415910f9e744bd36278a14dcaafd9b8 authored almost 3 years ago by Jack Ladwig <[email protected]>

fixed broken status.

0f606ea9162de0cb3ed5dbb3fdbdd319a6aed2ec authored almost 3 years ago by Daniel Bryce <[email protected]>

broken state for sharing

75efb787ff5284122f8e05c27e6971215db9f310 authored almost 3 years ago by Daniel Bryce <[email protected]>

Updating protocols with i/o in pallete

53ce20b4229636d27cc0afc85d75897237925598 authored almost 3 years ago by Daniel Bryce <[email protected]>

ignores

19f13f2c9997dafb0c29b2efca9964985f1f403a authored almost 3 years ago by Daniel Bryce <[email protected]>

Several cleanups to properly store and retreive protocols.

42ae2731146e0f314d21c25d9ba6b8761337efac authored almost 3 years ago by Daniel Bryce <[email protected]>

initial cleanup of reqs and update readme

2c25f42a1003d9be9ef276b7e83633d8f2be5509 authored almost 3 years ago by Jack Ladwig <[email protected]>

Merge pull request #8 from Bioprotocols/rdf-roundtrip

Rdf roundtrip

39ca4a9729ba4e56992bf3ee0dfe44681b2a86fd authored almost 3 years ago by Daniel Bryce <[email protected]>

Added Timepoint ports and working on Input components.

23ddbacfbd76df8b5f828c9a20b4fe0dd1162728 authored almost 3 years ago by Daniel Bryce <[email protected]>

process primitive connections to paml conversion

051f362d708b67d903ee3c213f0067f5bca5c6e5 authored almost 3 years ago by Daniel Bryce <[email protected]>

Add support for converting graph primitives to paml primitives

5c0a775171e4504f1242b7e1532732ae17574eb9 authored almost 3 years ago by Daniel Bryce <[email protected]>

ignore media files

ac5e82eaedb4029aaef00f21602c4829b30fcf20 authored almost 3 years ago by Daniel Bryce <[email protected]>

Adapting for version differences on osx

cb048551a1f0cc1b12197b54a8270c99746669ed authored almost 3 years ago by Daniel Bryce <[email protected]>

Edits to run on os x and task to clean all

f1e56114676c892c7206c620955ea5f7f6de5836 authored almost 3 years ago by Daniel Bryce <[email protected]>

ignore workspace

9e726c417b7b05552e11418da34cd3fde38c6503 authored almost 3 years ago by Daniel Bryce <[email protected]>

fix rebuild command after having switched to viewsets

5f5ed49953a623068584e8730d5e53a8aaee0af2 authored almost 3 years ago by Jack Ladwig <[email protected]>

allow download rete graph

6bf80e477feef34a87bea93fca330a573158a02e authored almost 3 years ago by Jack Ladwig <[email protected]>

initial capabilities for downloading a file from the backend

e503ee3d1fa77d9f999b110b45ea6e2d934dd221 authored almost 3 years ago by Jack Ladwig <[email protected]>

update title

5e9a12de7597f7b3504de3cf546e81cf09e8f4b9 authored about 3 years ago by Jack Ladwig <[email protected]>

update manifest

337f6545eaab263500bc7a1cba9289a84b610a1b authored about 3 years ago by Jack Ladwig <[email protected]>

Merge pull request #7 from Bioprotocols/user-specific-protocols

very basic pass at user account associated protocols

4bc2a106a1ae808a482fd5741c235ebfa4f8e0f1 authored about 3 years ago by jgladwig <[email protected]>

very vasic pass at user account assoicated protocols

4d47767bb6290b74de0d6349ff6e46bbd9c7ec30 authored about 3 years ago by Jack Ladwig <[email protected]>

append not +=

b0bbd5fe5e27a3af3ea73b30b5897f93db5f4066 authored about 3 years ago by Jack Ladwig <[email protected]>

simplify trailing slash

8d0caf45b0776bc949fabe597a22ded08a4d322d authored about 3 years ago by Jack Ladwig <[email protected]>

make settings.py more configurable

d6b246642bd7fd40b3cce2efcc235513eb998d88 authored about 3 years ago by Jack Ladwig <[email protected]>

Merge pull request #6 from Bioprotocols/api_cleanup

cleanup api endpoints

1e2283319434e43d5dfbbb4033e7ab3de59366a2 authored about 3 years ago by jgladwig <[email protected]>

cleanup api endpoints

0a8c4206f653a6fa77a07d6dfab7c63afbab1ee3 authored about 3 years ago by Jack Ladwig <[email protected]>

fix gitignore after rebase

4fb4f149c9f528c14e6e2aabfba036842d214108 authored about 3 years ago by Jack Ladwig <[email protected]>

more specific css

445726633feb49882c7d02299622cad4c3f9ba72 authored about 3 years ago by Jack Ladwig <[email protected]>

cleanup settings file

b5a5f4b891599d84c05b9f14c7bd16b3b619b8ab authored about 3 years ago by Jack Ladwig <[email protected]>

enable logging

c1292d88528192bb9a356626700988e4f4b49bae authored about 3 years ago by Jack Ladwig <[email protected]>

switch to a requirements file for the backend

Then just use pipenv for the dev environment

cdf936c72376483b6b0cc8a6d2d45cbc28a14446 authored about 3 years ago by Jack Ladwig <[email protected]>

restructure code and use pipenv

af7b8774b7a94113805221f503a20e84d3f32e45 authored about 3 years ago by Jack Ladwig <[email protected]>

Merge pull request #5 from Bioprotocols/port-types

Port types

43d09143b5d835689696c2e9510e94d7daabf3b4 authored about 3 years ago by Daniel Bryce <[email protected]>

remove old workspace

9bf6e034638beeead7e602bbb9ee6c1a17f284c9 authored about 3 years ago by Daniel Bryce <[email protected]>

Fixes for saving protocols, port types, and added tabs for nodes in the protocol

2d03210bc1ac31b9fd3bbf15c60e448dedbe8fcb authored about 3 years ago by Daniel Bryce <[email protected]>

remove basename

428d07a8c32a3fba07fa402876c1dd5b772ea6cc authored about 3 years ago by Daniel Bryce <[email protected]>

checkpoint fixing csrf

e4984431fc180b3987485a78ff3292e3e8a49dee authored about 3 years ago by Daniel Bryce <[email protected]>

checkpoint

90a676c780724d18bdcc8d2d6e0788f558c24ed9 authored about 3 years ago by Daniel Bryce <[email protected]>

Merge pull request #4 from Bioprotocols/proxy-fix

Use IP instead of host for proxy

ba3e305d62a05f69a886db012dc2921efa0b3204 authored about 3 years ago by jgladwig <[email protected]>

Use IP instead of host for proxy

2c92764ccd5823a2db97cd0713fce49ba9a7421d authored about 3 years ago by Daniel Bryce <[email protected]>

vscode workspace configuration

8a8dce4d0dd78013dfdd62d779aaef80e781188a authored about 3 years ago by Jack Ladwig <[email protected]>

minor editor width tweak

ed6054dfe0c984ab071c9521841a86beb983da6d authored about 3 years ago by Jack Ladwig <[email protected]>

Merge pull request #3 from Bioprotocols/layout-updates

update editor layout

81547699eba3dc705dc4188e424b114ab340d8b9 authored about 3 years ago by jgladwig <[email protected]>

update editor layout

91fda60945f6de7108cbbefd6a7f72c5cf583217 authored about 3 years ago by Jack Ladwig <[email protected]>

Merge pull request #2 from Bioprotocols/user-accounts

Initial user accounts

128a5ca6fed4dfaae454b71e7aafa9110ffb0901 authored about 3 years ago by jgladwig <[email protected]>

cleanup login code

also hides the edtior behind the login screen and adds an account
dropdown for logging out.

11168cdd49bb0ddfd1dd2b3fdd645269d90d6d71 authored about 3 years ago by Jack Ladwig <[email protected]>

adjust CORS setup

disable axios proxy since we are instead using allowed CORS
origins. Also send along the credent...

2b5be0c2a53fbea567bbb26bfa286a2011d94278 authored about 3 years ago by Jack Ladwig <[email protected]>

initial configuring of sessions

Add a login and signup page that connect to the django backend.

Some CORS issues still need res...

9d4256c2efc83484d0c22c714b8b34f6e88cf88d authored about 3 years ago by Jack Ladwig <[email protected]>

Merge pull request #1 from Bioprotocols/react-integration

React integration

edb426380ceb815c0dbcd583a35a5f576962ac79 authored about 3 years ago by Daniel Bryce <[email protected]>

checkpoint on RDF serialization

b628e65424fa9de7b12db5483bda7897ed7eb933 authored about 3 years ago by Daniel Bryce <[email protected]>

Fixed menu and primitive port bugs

c252ec8e74d1074eb61cd75e8781f0470bd21e90 authored about 3 years ago by Daniel Bryce <[email protected]>

Round tripping from front to back end.

6372a2a5c7187466767f246df32f6c3d2635334b authored about 3 years ago by Daniel Bryce <[email protected]>

sending protocols to backend for storage.

13a1d2476352113c8557ae4e4b0f55cd11ce23bc authored about 3 years ago by Daniel Bryce <[email protected]>

Setup menu and initial actions

ab81d339cd9eb3d33b09c992eab84766be04c671 authored about 3 years ago by Daniel Bryce <[email protected]>

setup api to give primitive inputs and outputs

36a88b893cd54b7ab039cc5f37e143c876161112 authored about 3 years ago by Daniel Bryce <[email protected]>

main layout adjustments

02693e7f8adc0cc88e8ed87bc7b87d3fcba8a92e authored about 3 years ago by Daniel Bryce <[email protected]>

Added axios config to API.js

fd9cad61a3b3124d320711e70ba45aabf5a34339 authored about 3 years ago by Daniel Bryce <[email protected]>

fixed /rebuild endpoint

14f99cd2b7b7a354ed456563838985f66eedc0f8 authored about 3 years ago by Daniel Bryce <[email protected]>

set primitiveview for rebuild

9d1c884fe0a8839d74276aac0dbaa93d04c11fc7 authored about 3 years ago by Daniel Bryce <[email protected]>

removed vue and opened /rebuild

8556c11b0c57aa6fc7dad2fb163f1de663d758ef authored about 3 years ago by Daniel Bryce <[email protected]>

broken django blocking requests

6df1ac8d8bc3966238281cd11a1f60adb53cd3ae authored about 3 years ago by Daniel Bryce <[email protected]>

simple integration

f72906d457264574d05a546738779f18b18d89fa authored about 3 years ago by Daniel Bryce <[email protected]>