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github.com/GeomScale/volesti

Practical volume computation and sampling in high dimensions
https://github.com/GeomScale/volesti

Update requirements.txt

5bf9188fb11fddab17de98fabc505e993216ca5f authored 11 months ago by vfisikop <[email protected]>
Merge pull request #290 from vfisikop/fix/lpsolve_build_from_source

Build only with lp-solve source code, no need for liblpsolve55.so files

93bbc5008b8ec4682fd20702e0531e4dc889e963 authored 11 months ago by vfisikop <[email protected]>
Fix ambiguous call to pow for clang, and disable LoadableBlasLib

1703e69d7d88647a8d35ecef91b71e3a60e48e97 authored 11 months ago by vfisikop <[email protected]>
Upgrade boost from 1.76 to 1.84

f8db05ccf6694e1f1246fab730061dee1bce323d authored 11 months ago by vfisikop <[email protected]>
Update tests and some examples to buid with lp solve from sources

7da53c4e2b1657790f04439c4c42e7d4969d07ff authored 11 months ago by vfisikop <[email protected]>
Build only with lp-solve source code, no need for liblpsolve55.so files

432b9679e8359ca706c7b8517ca564b047c4272d authored 11 months ago by vfisikop <[email protected]>
Merge pull request #289 from vfisikop/remove_volesti4dingo

Remove volesti4dingo branch

ad049d53996aba072f95d6f9d9810f3ffb4e76e1 authored 11 months ago by vfisikop <[email protected]>
Remove C11 flags from cran

1ae6a45f54260db9532f6d48b9a8fa90577462dc authored 11 months ago by vfisikop <[email protected]>
Rename LinearProgramFunctor to ExponentialFunctor, add inverse variance parameter, add define lp_solve guards to orderpolytope

b15c9d858b984ed7bd2c853842d887e5d050696e authored 11 months ago by vfisikop <[email protected]>
Update CODE_OF_CONDUCT.md

e767f4669c19ff019eb47aa2ecd1dba14cb424b6 authored about 1 year ago by Vissarion Fisikopoulos <[email protected]>
Use of SIMD computation in CRHMC walk [fixed] (#286)

c31e98bdc9b3fa1fe1b1b13e9a95a899d4f33eb9 authored about 1 year ago by iakoviid <[email protected]>
No-U-Turn Sampler in HMC (#216)

* initialize nuts sampler class

* implement the burnin of nuts sampler

* add tests and res...

074a562ab1984fcd1f3aa58f6bd63d0d109842ca authored about 1 year ago by Apostolos Chalkis <[email protected]>
Fix the warning message in R Mac's cran test (#285)

* copy and replace lp_rlp.h

* remove re-initialization of eta

* update ubuntu version from...

157955cdb5afe71338ac62ecb4fd34366f63b53a authored about 1 year ago by Apostolos Chalkis <[email protected]>
Merge pull request #265 from vissarion/feature/ci_examples

Enable github actions to build examples

ac68063c9d8616d2b964fdec803a9c5b147e3fa6 authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Updating documentation (#261)

Adding WSL and MKL build instructions.

9d495d6768de9b0f5ddc24698bc99b29f8da1b78 authored almost 2 years ago by Soumya Tarafder <[email protected]>
Fix ambiguous call to fix function by renaming volesti's diagnostic function. (#263)

553cf553a1f3e313aee315bf4e5d347c4bf469df authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Enable github actions to build examples. Avoid passing a polytope as a const reference.

2b876b256a919446e08ccda260a68dfc5dbc26be authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Fix CRAN badges in README (#259)

423bbcfc9851b43acd62032c732d633f0d6cb01e authored almost 2 years ago by Vissarion Fisikopoulos <[email protected]>
Update CRAN badges (#255)

Issue https://github.com/GeomScale/volesti/issues/254

6b359f424f9f3075dab7737c6630267aa3df3257 authored about 2 years ago by Vissarion Fisikopoulos <[email protected]>
Basic c++ documentation addition (#253)

82d138340256a2b8a2b7f98e648e247350a72d8f authored about 2 years ago by AlexManochis <[email protected]>
Update README.md (#252)

fbc420612a901bf3aaa44bd8fa80e48f40128f40 authored about 2 years ago by Vissarion Fisikopoulos <[email protected]>
Add rng parameter for MC integration + fix dimension bug (#251)

* Add rng parameter for MC integration + fix dimension bug

* Fix parameters order

* Adjust...

ba0e697a414bda101c8010676cc929131da2f064 authored about 2 years ago by Gabriele Masina <[email protected]>
Merge pull request #249 from vissarion/fix/doctest

Fix doctest compilation error and update actions

7cdeae2a041da36158d25053646f1c28e9578eb5 authored about 2 years ago by Vissarion Fisikopoulos <[email protected]>
Add documentation actions and fix doc issues (#248)

bf9c232983274e85171a60b383355ddf258c15fe authored about 2 years ago by Vissarion Fisikopoulos <[email protected]>
Feature/sampling correlation matrices (#233)

* first commit

* draft

* draft

* update some code

* finish Point_matrix.cpp

* cha...

130a2dff0dc03aaa0ec8eb114517d5b08efa5679 authored about 2 years ago by Huu Phuoc Le <[email protected]>
Constrained Riemannian Hamiltonian Monte Carlo Walk (#239)

774abdb3681857bbd4033a155fb18ae455ae16b7 authored about 2 years ago by iakoviid <[email protected]>
Merge pull request #247 from vissarion/fix/R_actions

Fix R actions.

55e6371bb59f8b47fe9f4fb9ea0fd8b8eef5e76c authored about 2 years ago by Vissarion Fisikopoulos <[email protected]>
Fix link to lp_solve

b94484eb52a57738cae5413635f74b46faf10df2 authored about 2 years ago by Vissarion Fisikopoulos <[email protected]>
Fix R actions.

16717d3690fbbae6b2927cc36c6107accab3e7fa authored about 2 years ago by Vissarion Fisikopoulos <[email protected]>
Update doctest to version 2.4.9

6733390d9d05b847389eda1e9a46069eb3cd2430 authored about 2 years ago by Vissarion Fisikopoulos <[email protected]>
Disactivate g++13 and clang++-15 from Ubuntu 22 actions until they become available.

83272eb965a799743497dc63d0900498322cc281 authored about 2 years ago by Vissarion Fisikopoulos <[email protected]>
Update ubuntu-based github actions.

9fbc827d451331f7303bfa35c88c69a74b3e27df authored about 2 years ago by Vissarion Fisikopoulos <[email protected]>
Constrained Riemannian Hamiltonian Monte Carlo preparation (#238)

38f6b34bae2599fd83455a7600e3acbc32ddd189 authored over 2 years ago by iakoviid <[email protected]>
Merge pull request #235 from vissarion/fix/compute_diameter

Move compute_diameter functions in one place and fix R-CMD-check-ubuntu

b05d574a05b7a867cb72f80c7a1531d433df28c7 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Fix build issues related to some examples. (#237)

* update README.md and Cmakefile

* fix errors

* Cmake fix for test

d838b4388fffebc3c912506d080008c669f1946d authored over 2 years ago by zhanggiene <[email protected]>
Fix overflow edge case in sequence of balls volume method (#228)

* Fix rnum=0 causing integer overflow in SoB volume

rnum-1 is passed into RandomPointGenerato...

cc8e5b05978210580fcda45a02edceba5a931304 authored over 2 years ago by dymil <[email protected]>
Fix github actions R-CMD-check-ubuntu issue with devtools.

b2e1d7632a78b96371f97da62efd46dad2aa9b53 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Move compute_diameter functions in one place.

3a1aaddd8c193f51a4d94bff5c329b779c16e5f5 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Fix logo link in documentation and add docs badge in readme.

ce20ae8c03cddf9b987d111994d3ae7b1a3608c2 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Merge pull request #232 from vissarion/docs_clean

Create volesti documentation structure

361f9e9932026732de786ceb0b0339c8f1bb5a8d authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Remove sitemap and test

1513e9cb2755bb9bbe98c2f0c92cdca42152deb4 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Add tutorials in doc

ae68bb425624ba988c068bd9dfb7b4a07d7a1266 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Draft use-as-example documentation for the Hpolytope class.

b4b1985be976e3708e1df5e9e887babac7f1c0c1 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Enhance tutorials, remove duplicated files and update links

7cd5b9459694115cae3d901afb73dd93cfa16095 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Sphinx system requirements

9f1b8ad43bad0f4b2982f75ffaac0f9408efd3b7 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Add examples and installation guides in documentation.

838f0d6e3fbf305b0eda2d8ac628f24f217bad56 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Change structure in documentation and add yaml file.

f81aa5438626d1eefa728141c15b3e67c3af5928 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Add index.rst in documentation tree.

91fe2b4e041fafc37ba5cc4bb9d3781d5cef4695 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Add intial doxygen/sphynx/breathe documentation

11b1d9ea2785af33b2ed36bb4b65f47ee909e56d authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Move logo to new directory under docs

bae9f843eaa3830fde0c2f4d4b1294e0389d6451 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Update README with rtd documentation link

eab33a148a8d8b0837262ec1117de18bdd432a20 authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Delete redundant .vscode in .gitignore (#231)

0287c076b2c57dfe90d59ecdf9b5625d87c0e816 authored over 2 years ago by dymil <[email protected]>
Fix undefined behavior in Hpolytope method is_inner_point_nan_inf (#224)

Return false if no NaNs or infs are found, because flowing off the end of a non-void (non-corout...

94eee7e5e864cb21656f5c98dd28f4b64b480fb5 authored over 2 years ago by dymil <[email protected]>
Fix warning about missing enumeration types in switch (Rcpp). (#222)

59cd27e2ee05afb13a65b17b30bd4e3adbc29f4f authored over 2 years ago by Vissarion Fisikopoulos <[email protected]>
Bump numpy from 1.21.0 to 1.22.0 in /examples/logconcave (#221)

Bumps [numpy](https://github.com/numpy/numpy) from 1.21.0 to 1.22.0.
- [Release notes](https://...

385c8704ac7d8dc6308d294ac8ef7baa2767e829 authored over 2 years ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bump numpy from 1.19.2 to 1.21.0 in /examples/logconcave (#208)

Bumps [numpy](https://github.com/numpy/numpy) from 1.19.2 to 1.21.0.
- [Release notes](https://...

2e6572d9ba757de311f2a55b09abf8f9c02e932e authored almost 3 years ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Remove directory volestipy (Breaking change. Only package dingo could be used by Python users, #207)

* remove directory volestipy

* remove python documentation from readme

* update the readme...

bdb8cb929b28982e1d5db3311a2a19bfb8b7a9e9 authored almost 3 years ago by Apostolos Chalkis <[email protected]>
update the readme

73608a4667ed8fe495a9fbdcb141a14c3e441f1b authored almost 3 years ago by TolisChal <[email protected]>
Gaussian accelerated billiard walk for volume cooling ellipsoids algorithm. (#195)

* add _deps to gitignore

* add initial version of GaBW

* add example for comparing billiar...

0d11c6828eea8011efbd32f5eb61277098171893 authored almost 3 years ago by Vaibhav Thakkar <[email protected]>
Volume approximation for spectrahedra (#173)

* implement boundary oracles for line intersection

* enable spectra as the default solver

...

45dd96ddb70bbdbf3257a9087fc7bdf679c0a32c authored almost 3 years ago by AlexManochis <[email protected]>
Parallel version of random walks (#172)

* implement random directions Hit-and-Run (multithread)

* implement Coordinate directions Hit...

b60365def62b6f90d4d8be8889decb2b236d2b80 authored almost 3 years ago by Kostas-Pallikaris <[email protected]>
Implement biomass sampling experiments for metabolic networks in C++ (#197)

* implement biomass sampling experiments

* modify circleci/config.yml

* fix bug in log-con...

6591ae8c20e4610094a41616ed29b4cc0fdaede0 authored almost 3 years ago by Apostolos Chalkis <[email protected]>
Fix metric reporting (#196)

Fix metric reporting in exponential sampling tests.

f9d3414716552a594753d79f1bd4fc4e09f891a5 authored almost 3 years ago by Marios Papachristou <[email protected]>
ReHMC support for spectrahedra and general convex bodies with refactored Spectrahedra classes (#194)

* Squash commits into one

* Minor changes

* Remove merge blocks

* Disable MKL in github...

584af91869fb160b8a4a67f1f3c3ffc91dd11e33 authored about 3 years ago by Marios Papachristou <[email protected]>
CMake refactor and fix examples. (#190)

* cmake refactoring

* lpsolve include changes

* fix in examples

* Trigger Build

* fi...

c9cc0ecb5e7e6d62fb05f8cef5e509f054eceab8 authored about 3 years ago by Vaibhav Thakkar <[email protected]>
Enabling codecov comments

430d8cf77ccde19afaf6452f4b0c2cdf6bada2de authored about 3 years ago by Vissarion Fisikopoulos <[email protected]>
Enable code coverage (#188)

* add codecoverage

* minor change

* use xml instead of html

* add include folder

* a...

f8ba77035b08379b49d6e08cab1c879f2f0a05f1 authored about 3 years ago by Vaibhav Thakkar <[email protected]>
Upgrade eigen to 3.4.0 (#186)

* upgrade eigen to 3.4.0

* fix tests failures due to eigen upgrade

* minor fix

* revert...

af5e2a0a7a342bbf2ae2be614cad155d26ff5df3 authored about 3 years ago by Vaibhav Thakkar <[email protected]>
Update README.md (#187)

536264da2a316fed9df84d288787602675abec27 authored about 3 years ago by Pradumna Saraf <[email protected]>
Remove lpsolve files from external (#183)

* remove lpsolve from external

* minor newline changes and add Wno-deprecated-declarations

...

54b5652f76271970725b94f42f168080459e119c authored over 3 years ago by Vaibhav Thakkar <[email protected]>
add macro to exclude headers not needed in dingo

3f12d68188f169cc768b48bfd27f26522771fcfd authored over 3 years ago by TolisChal <[email protected]>
Update README.md

Replace `volume_approximation` with `volesti` to fix links.

90e2bb093a03a90493473666d68126c543c771fa authored over 3 years ago by Vissarion Fisikopoulos <[email protected]>
Simple MC Integrate Feature (#163)

* Simple MC integration 1st commit

* .gitignore updated test/build

* added build to .gitig...

3a7d072180e1762ea37d8f9976dacf255e8b53e5 authored over 3 years ago by Suraj Choubey <[email protected]>
Multiphase Monte Carlo Sampling (#147)

* implmentation of exact hmc walk

* implementation of boundary oracles for the hpolytope

*...

eb74ba3cce24d4c0fa90481f5f167cf9a06f9e6e authored over 3 years ago by Tolis Chalkis <[email protected]>
Exact Hamiltonian Monte Carlo for spherical Gaussian sampling (#144)

* implmentation of exact hmc walk

* implementation of boundary oracles for the hpolytope

*...

d74cdcb729d6016b5f29ee396ef49cfed395d05c authored over 3 years ago by Tolis Chalkis <[email protected]>
Ellipsoid related changes and improvements (#177)

* reformatting changes in ellipsoid sampling example

* fixed and improvement in ellipsoid cla...

83c989da4113930ff1938bb295bcb84a13f1a67a authored over 3 years ago by Vaibhav Thakkar <[email protected]>
Order polytope related fixes and improvements (#176)

* add some generators for order_polytope

* minor changes in order polytope

* add requested...

8ad3505b54a8dac6ad169175270b0cd56efa7bdd authored over 3 years ago by Vaibhav Thakkar <[email protected]>
Cran actions fix for ubuntu (#178)

* change github actions for ubuntu

* add sudo apt install commands for devtools error fix

...

558627e48ba0ebae8295982eabb60b9c43b0d5b1 authored over 3 years ago by Vaibhav Thakkar <[email protected]>
Reformatting changes and some minor improvements (#175)

* move math helper functions to a common place

* add utility functions for reading poset and ...

7915eb141ff0a23f729ee39f74a918eb5fb2f361 authored over 3 years ago by Vaibhav Thakkar <[email protected]>
Implementation of ellipsoid class and sampling from an ellipsoid (#169)

* Add Ellipsoid class

* Add method for sampling from an origin centered ellipsoid

* commen...

fb12d672a37e7c32d5961212c2c47ba103bee83c authored over 3 years ago by Vaibhav Thakkar <[email protected]>
Max inscribed ellipsoid sparse (#166)

* add test for max ellipsoid rounding

* fix minor bug in new_rounding_test

* minor fix in ...

758d4178efe70bad190426e391ea9635715645b5 authored over 3 years ago by Vaibhav Thakkar <[email protected]>
Order polytope class (#165)

* Initial commit

* Add functions for line intersection with rays

* Add more member functio...

62145c823834c24079a21ebd8d0d8f43227c6e84 authored over 3 years ago by Vaibhav Thakkar <[email protected]>
Count linear extensions using hpolytope (#161)

* Add example for counting linear extensions using hpolytope volume

* Create README.md

* U...

ea415b1e012944c9dce81a7e92a7ff13502cb134 authored over 3 years ago by Vaibhav Thakkar <[email protected]>
Update R-CMD-check-windows.yml (#162)

8e0ddfd9629bd0f718c2a4da96be655791a8bfaf authored over 3 years ago by Vaibhav Thakkar <[email protected]>
Update boost integration (#158)

* fix boost in tests and examples folders

* drop g++4.8 test

79bd539efa30d68f8913c8a177c55e34d797aa3f authored over 3 years ago by Tolis Chalkis <[email protected]>
Estimate the logarithm of the polytope volume in CB algorithm (#157)

* modify the cooling balls volume function to return both log_volume and volume estimated

* m...

0ce5001e40dbad4d2e7a231dbabdbf0e6b6b6a1f authored over 3 years ago by Tolis Chalkis <[email protected]>
Redundant C++ test files removed (#153)

* vpolytope-volume example added

* vpolytopevolume.cpp updated

* examples directory CMakeL...

9fe4692ba7d9a274d939439641431e692228e65b authored almost 4 years ago by Suraj Choubey <[email protected]>
V-polytope volume example (#152)

* vpolytope-volume example added

* vpolytopevolume.cpp updated

* examples directory CMakeL...

f5b2614419717727f0a35db6a4ed869a1975933d authored almost 4 years ago by Suraj Choubey <[email protected]>
Truncated log-concave sampling (#138)

* Squash commits into one

* Minor changes

* Remove merge blocks

* Disable MKL in github...

422c4816a3058bbc01ee156a7e357dec015fd971 authored almost 4 years ago by Marios Papachristou <[email protected]>
CMake instructions for boost library (#145)

* Remove boost library from external folder

* CMake instructions for boost

* Config change...

218d0c251449ac768035ef964dd692a4e433400b authored almost 4 years ago by Vaibhav Thakkar <[email protected]>
Modify github actions to use ubuntu-18.04 for gcc (#146)

d265178d7783b5d51af139e7721ca2b8cb9dc814 authored almost 4 years ago by Vaibhav Thakkar <[email protected]>
Fix instructions in readme file to build R interface (#137)

* fix readme instructions t build R interface

* update the instructions according to PR discu...

ea886a9dcf51983f4d155245fb8edb1c0a4af0e9 authored almost 4 years ago by Tolis Chalkis <[email protected]>
Exclude lpsolve from python interface (#135)

* add flag for volestipy: do not include lpsolve

* improve header file icludes

c22bcaf3830cac3d12b751c13e208a3c18ea27b3 authored almost 4 years ago by Tolis Chalkis <[email protected]>
Replacing boost::ublas with Eigen (#129)

* Changing code to use Eigen instead of ublas

* Fix error in outer product

* Minor bug fixes

f77383353c51da9db1add31d3c19986200f3dc6d authored almost 4 years ago by Vaibhav Thakkar <[email protected]>
CMake instructions for downloading Eigen (#131)

* Remove Eigen from external

* Add cmake instructions for downloading Eigen

* Update minim...

ef93614a5e5dbab3e3f3167e3cbfb416f2c18ff7 authored almost 4 years ago by Vaibhav Thakkar <[email protected]>
Interior point methods for SOS optimization. (#93)

* First version

* fix picture

* fix in doc

* updated Eigen library

* Bug fixes. Add ...

7cf216ada271b869d6b563ba5b559322e5cc4a73 authored almost 4 years ago by Bento Natura <[email protected]>
fix bug in function vol_Ali (#132)

f6edf618b85b8434bb4c3d83b7d9d3ddf61f7639 authored almost 4 years ago by Tolis Chalkis <[email protected]>
Fix github actions tests (#133)

13c4d8166313f04528d10b696858014df3781d60 authored almost 4 years ago by Vissarion Fisikopoulos <[email protected]>
Create CODE_OF_CONDUCT.md

2f7697cd102f62ad6f3ea123398652225c15b0f2 authored almost 4 years ago by Vissarion Fisikopoulos <[email protected]>
update circle CI

bda3b5c0b52f42e20589514d89cf5439c70fa061 authored almost 4 years ago by Vissarion Fisikopoulos <[email protected]>