github.com/radis/radis commits | Ecosyste.ms: OpenCollective

fix documentation links

6a308ecb93c2f0ac699bacf1b771097a39d82268 authored almost 4 years ago

fix contributor link in readme

bb0a67d00a3e3b6d3bc23e596b4d556d4572fadb authored almost 4 years ago

automate conversion

7a5b9b3179c6fc75eea626e98cf3e3e0810ff46c authored almost 4 years ago

automate conversion

d942d5d0af50167cc34571bbebac0f1defd1107d authored almost 4 years ago

replaced all original functions with JSON function, storing in radis.json now

3f25a5dfbbbbf324726aaf9e72ccaf8aa06924e7 authored almost 4 years ago

Update convolve with slit with scipy.signal.oaconvolve() which is much faster in our case (convolution of a long array with a short one)

e8f4b8a517a9a75bef10aed7f9f6c7d312812faf authored almost 4 years ago

Update test_calc_spectrum() with hardcoded w_ref values

e41cc40b8f281882ddbd07341de0f6456893bce2 authored almost 4 years ago

Merge pull request #219 from CorentinGrimaldi/develop

Fix issue #218 (Slit dispersion bug over large spectral range)

6e4703d6cc654bc218a698cb43eedf5d3015dd19 authored almost 4 years ago

Update comments

020034ac1455a29f769f161d1dd0bef7ec3e4b03 authored almost 4 years ago

Fix #218

21ad2edccc0a714bb0d92bae38073b271bc189de authored almost 4 years ago

Fix issue #218 (Slit dispersion bug over large spectral range)

By transmitting the mode to the convolve function (default is valid) and removing boundaries onl...

1b3bcbe793ce071061911a85b85ad81e2ed4b4a6 authored almost 4 years ago

Merge pull request #217 from gagan-aryan/range-mismatch-wavelengths

fix: wavelength range mismatch. Fix #214

33897431c0c0265b66fbe5e39094bf012ddacbe3 authored almost 4 years ago

linting

47e28c3ee730bd4bb809dce9bc1752484330a928 authored almost 4 years ago

chore: requested changes

b638bcb109494da76d26dcdba4bc5ca44d6bdaf2 authored almost 4 years ago

fix contributing.md

3304f303eb0a762f1c79253beb3203e20d2cc76e authored almost 4 years ago

Modified all functions to add to database key

6a29447980b8da29aabbaea21035f168aea72257 authored almost 4 years ago

test: check_wavelength_range

e72b9790efe5d717d0fd4fb9a1eb523fb98e1259 authored almost 4 years ago

fix: #214

1f4524e55e9ca59448585d3bba17e03f05465bae authored almost 4 years ago

Merge pull request #207 from erwanp/update-contributing

Update contributing

c421c67444d45f1d95062dd0a1e2201524965c8a authored almost 4 years ago

Merge pull request #216 from anandxkumar/develop

Fixes Rendering of Radis Flow Chart Image in LBL and cdsd4000_vs_hitemp_3409K Image in Use Case ...

3e5a7380b19bdd1adb7300922209511dba4bbce8 authored almost 4 years ago

Fixed image render in lbl and features doc

1318ac66dde28e2b77b85638959fae604afcf943 authored almost 4 years ago

Fixed image render in lbl and features doc

595eb64fc6f909a152fd824369a9ccbb66014246 authored almost 4 years ago

Modified Convert and JSON Functions for proper paths format

2f9f74bf46f00aa262170963ffaf26068dc41591 authored almost 4 years ago

Modified setup_line_database function with all JSON functions

eab14750c5659db3642b6f51040b213210fb417d authored almost 4 years ago

All functions added in config.py

3e6d76b1cfaaad13dcc676dea517e9cd54f1d674 authored almost 4 years ago

Resolved merge conflict

8db8c46d33fca97879612977548566ca3ec10727 authored almost 4 years ago

Replicated all functions in config.py for JSON format

5dabe227a3df4e41e4c596c95b34e27d7883896f authored almost 4 years ago

Apply suggestions from code review

Descriptions indented properly

Co-authored-by: Erwan Pannier <[email protected]>

e7a8d1e1e61c47ffd3e0153eb5c5e2b0391e53d7 authored almost 4 years ago

Code linting passed

019035376c2e0d7832c95ab2b84dff80115c1590 authored almost 4 years ago

Added function to convert .radis to JSON format

155f3929b8f09054064f73448cdf0d4dc0dedf3b authored almost 4 years ago

Merge pull request #209 from erwanp/mention_hapi

mention underlying HAPI interface when using Astropy.

035f8eec0f87063243eac2d6a9c58b32b155d42a authored almost 4 years ago

Apply suggestions from code review

Descriptions indented properly

Co-authored-by: Erwan Pannier <[email protected]>

fa0786f81720fc337d428d97d7bf1688d2476689 authored almost 4 years ago

Code linting passed

19f2e43c0394d74a4c2e21800c8be4ca14d20547 authored almost 4 years ago

Added function to convert .radis to JSON format

a02853dcb4de5986eadf799e05bbbff05ddcfec5 authored almost 4 years ago

add test case

0c1e0a28b2b17163c1262029cb420fe3827310aa authored almost 4 years ago

(wip) refactor

- print(db) is now possible

1acf1d719e233718c8340ad37fdb2419bc152d8a authored almost 4 years ago

typo & improve docs

79f99b6aa3020e017b0bb76421894433cd6fb1c3 authored almost 4 years ago

mention underlying HAPI interface when using Astropy.

also added "how to cite" references in main functions to correctly reference all databases

21b8c77a473fee873754a49d9e61fdbe7b8927bb authored almost 4 years ago

simplified CONTRIBUTE.md guide

add guide on how to keep your Fork updated

b8a413913550b53b82e5a15acc59d22e9b3fa252 authored almost 4 years ago

simplified CONTRIBUTE.md guide

45dfc4a03b3135e1e104196f760467e45f1d707e authored almost 4 years ago

linting, renamed 'load_all' as not 'lazy_loading'

047efde7a7add9571835e5dee907c9d891eca652 authored almost 4 years ago

Add the option 'load_all' in the Database object. This option allows to not load all the spectra at the database creation but only when accessed making the database creation almost instantaneous.

64eb0f309ebe9a15303fab05a6188a029da03619 authored almost 4 years ago

Merge pull request #205 from erwanp/add-sphinx-gallery

Add sphinx gallery, with 3 first examples

42a1516cbf3304358c66cc21169e0df4ecf4d74d authored almost 4 years ago

add mini-galleries individually for some functions & methods

2195542bf0d903a34e55d468f99b9c2869d49590 authored almost 4 years ago

add mini-galleries individually for some functions & methods

0fa047884228bbb7420191da8d7704003d00877e authored almost 4 years ago

(fix links)

658b1e064428d3da0814d01835972f7a1979381f authored almost 4 years ago

adding mini-galleries for line_survey

93490ca758564ac379e6cb60e52e0a7eb90a018c authored almost 4 years ago

clickable radis functions in examples

cd6454f886a5863b33a6e62a310dac9e991692f1 authored almost 4 years ago

ground work & requirements for gallery of examples.

Generating it properly
(wip) shown directly in main index for the moment

6755d5255125e2686bf37a03c0c7a593ae9ddbbb authored almost 4 years ago

add flag to parse local/global quanta, make it happen when exporting lines.

Fixes line_survey examples not working

9ab0b5ed2a8f78b11ca0624b6cd1a0d287eeda7f authored almost 4 years ago

fix optimisation mode in CH4 benchmark

593784c8a01a9ae16000763283016a66316df8cf authored almost 4 years ago

Merge pull request #204 from gagan-aryan/partfuncfmt-error

fix: partfuncfmt error. Fix #78 fix #80

bf2a7919c2b416057a66591e93fc8cfc085fff2a authored almost 4 years ago

linting

d7dd942b0b68cda48a968187a7cb02f4f572b239 authored almost 4 years ago

fix: levelsfmt error

7b4299d17df792911bcb691701ab75aa9b0b5b6a authored almost 4 years ago

Merge pull request #201 from erwanp/more_molecules

Non-HITRAN molecules

eca6777f8423468d0129d2009863c2ad4c1d920a authored almost 4 years ago

fix: partfuncfmt error

be5f72d197358f2d275ed88634db4b23e98c909e authored almost 4 years ago

add python code block in bug template

83ed408eedb7771fd55a38f828a22c38535e6728 authored almost 4 years ago

Merge pull request #203 from erwanp/hdf5-improvement

HITEMP-Hdf5 improvement (mainly : CO noneq wih autofetch)

- renamed "hdf5" dbformat (a file...

152998225e90c1cf7286c1049931fca3e05155b6 authored almost 4 years ago

fix return of fetch_hitemp

2703857e0206e2d40305dbfce97efda14ad66a2f authored almost 4 years ago

parse HITEMP local/global quanta before storing the fetched file to disk. Fixes previous test.

0a4c6766ec446ea7bf7396e0f6a2940477f1a2b4 authored almost 4 years ago

add non-eq calculation with direct-HITEMP download [fails with 0.9.28]

auto-download HITEMP CO database for noneq tests (14 Mb ~ 14 gr CO2).

a8154179e7c5bed41342232d1526e1f24696ca0b authored almost 4 years ago

- improved error message when missing 'branch' (not fully parsed HITRAN file)

8f8e93c4474965c31a10911d3e4f27819b634ac5 authored almost 4 years ago

- renamed "hdf5" dbformat (a fileformat not giving any idea about the line database used) to "hitemp-radisdb"

- fix nonequilibrium calculations that were blocked on "hitemp-radisdb" for CO
(misc)
- add local...

c8e5530755b871c0e1ecf23fad6dd349e420ff0b authored almost 4 years ago

Merge pull request #202 from erwanp/fix/export_lines_not_working

Fix/export lines not working

0dd2d9d8e63e403523afb4f28324fe4d829e7a02 authored almost 4 years ago

improve line_survey tests

cabbfe6fbdf08f4448e33539741da71cbf9a43c4 authored almost 4 years ago

fix export_lines not correctly forwarded to SpectrumFactory

87bef11a505f7960c6e0b8599671263414254833 authored almost 4 years ago

allow more molecules than HITRAN without crashing

allow user to input their own spectroscopic constants directly as a dict

9d6abb0f7750e6b188c2d9977ac7febc56adb629 authored almost 4 years ago

- fix a parsing error with multiple isotopes under HITEMP

- print total number of lines at beginning of calculation

2a6c4c5879cf45b4b3337a06cd0815541460c766 authored almost 4 years ago

crash with specific OutOfBoundError if beyond the range of TIPS-2017 partition functions

02da3b74caa9cd1962e2523e03196a907f7bf88c authored almost 4 years ago

silence HAPI messages if verbose==False

8da9467198aea9039209f9cd58edf1d5bc3835d1 authored almost 4 years ago

Merge pull request #199 from radis/develop

0.9.28

automatic download of HITEMP database and more
see https://github.com/radis/radis/p...

2c60d354f96812f41b30ffc8e24ed0c3f5b062eb authored almost 4 years ago

final fixes

ee39ebe6bf77b5250bbbf92759e08eaca8530f20 authored almost 4 years ago

prepare 0.9.28

fix links, fix some docs, fix tests.

0e826b0fa1334e5e61efc97c2e62415e3941c73c authored almost 4 years ago

option to save to file directlyfrom calc_spectrum

option to export export_lines directly from calc_spectrum

863800155a729a7090a8163632e07bd5e3bc0fab authored almost 4 years ago

Merge pull request #200 from erwanp/warning-coarse-grids

Warning for coarse grids. Fixes #186

c8bc484799344989799b2e47e7ccbd0623983c8c authored almost 4 years ago

Merge pull request #198 from erwanp/clean-old-database-loading-methods

Clean old database loading methods

852216e758540d2b108d29a4e561788ad6e291d0 authored almost 4 years ago

fix : default warning status was not copied thus shared between different SpectrumFactory instances

fix typo

b7bcd26c329aa20da486f014615d78e43f7ac539 authored almost 4 years ago

escape AccuracyWarnings in older tests. Fix tests.

changed AccurarcyWarning warn threshold to 5 wstep per lineshape
all warings inherit from Accurac...

44e27a4e1155d7abc29917f2bfce4fe5aa906649 authored almost 4 years ago

add warning on coarse grids :

AccuracyWarning if less than 6 wstep in a lineshape, AccuracyError (code wont compute) if less th...

73be2d867fcba987881a43c7366bc2e748cdc958 authored almost 4 years ago

Merge remote-tracking branch 'origin/clean-old-database-loading-methods' into clean-old-database-loading-methods

# Conflicts:
# radis/io/cache_files.py
# radis/io/cdsd.py
# radis/io/hitran.py
# radis/lbl/facto...

dff686769e81039cc066aeddce875b489b5f0be0 authored almost 4 years ago

fix variable not passed

0dd6ed3b596fb3b77d094dad371038570970f2ab authored almost 4 years ago

deprecate .npy direct loading (worked only at equilibrium, less convenient than HDF5)

remove 'h5' buffer during load_and_concat of many lines : MemoryErrors are avoided by other means...

3007d22448645932b8c66c21e9ad195d2a517e61 authored almost 4 years ago

Merge remote-tracking branch 'upstream/develop' into develop-upstream

0aa8672bde228a427d2c3f6b8116a7a19f7d872f authored almost 4 years ago

Merge pull request #194 from erwanp/feature/improved-database-loading

direct HITEMP + HDF5 loading.

Major improvements on database handling :

- Download and un...

fb62057993ca6ad0dc3da5ed4b1d99e838bc0ad7 authored almost 4 years ago

clean downloaded cache files after uncompress is complete

f611ab6da58a1099645c745bc3b03e6ba8d104d9 authored almost 4 years ago

fix Travis-CI that was downloading large databases

fix read metadata mode that was modifying the file last access time
fix error returned when openi...

e6b98e810eb3f8fee73c97d9eb420c5365f4099b authored almost 4 years ago

register database automatically if already downloaded

add tests at end of download (ex : number of lines match expected one)

411444640e9534dc73bd10c3bf9e9475b1ee5c0f authored almost 4 years ago

(refactor) move cache_files from radis/misc to radis/io

da8459c0f3123a8cd5dc0052a697d84b83f50d47 authored almost 4 years ago

remove h5py and fully switch to PyTables

(more consistent, and metadata are stored at the dataset level and not in root --> will Deprecate...

c92037eabf84074106399d7922c66fec2585d3b6 authored almost 4 years ago

upgrade Pandas minimal compatible version for Metadata

Co-authored-by: dcmvdbekerom <[email protected]>

33fdc48642497b5e43093807b3fc0b9560a44e63 authored almost 4 years ago

properly append to existing HDF5 file : fix error reported by @dcmvdbekerom in #194

improve HITEMP-OH test to test for total number of lines

(misc)
- add new pytest markers 'downlo...

b2f8889f01b70ff7314e0d67098c719a95696d17 authored almost 4 years ago

fix variable not passed

7dc988013231c82ddbccad9e33e640a46bf3599a authored almost 4 years ago

deprecate .npy direct loading (worked only at equilibrium, less convenient than HDF5)

remove 'h5' buffer during load_and_concat of many lines : MemoryErrors are avoided by other means...

90cbc605db4c52b7eca8ecf549b81d82b02b6b9b authored almost 4 years ago

clean code: move db_use_cached at load/fetch_databank level

9df84ac27202b7cfaaf381955b9ee7b481cc5d44 authored almost 4 years ago

update wavenum_min/max check in cache file

51b8ec84d21ab577308e2edbffedf625fc9e63c1 authored almost 4 years ago

(docs) misc improvements & fixes

27c0ee11ee9cf4fccc8ff6c48839f54bfc521bbd authored almost 4 years ago

(docs) update README with new automatic HITEMP download feature

also mention https://radis.app and https://radis.github.io/radis-lab/ directly

90a56c2e4333e7074425652d8f812166a14ac909 authored almost 4 years ago

(docs) mention automatic HITEMP download feature

9ac189aaf422a03dfcc19cd94e6cd04d184a9bf4 authored almost 4 years ago

Update CONTRIBUTING.md

260f35b5856ce78e6d4d966dc06fd95c5fff097d authored almost 4 years ago

set use cache by default for hitran/hitemp reading functions

fix a wrong declaration in cache_files, this should fix the last test
add new tests

e6f911a4af20c7a4b4d17f92d22b0132e764efe5 authored almost 4 years ago