github.com/ESHackathon/CiteSource issues | Ecosyste.ms: OpenCollective

change read citation argument to include all fields

TNRiley opened this pull request 30 days ago

Tables not accurate when users deduplicates items manually

TNRiley opened this issue about 1 month ago

Tables creation reliant on labels (shiny)

TNRiley opened this issue about 1 month ago

read_citations doesn't allow for only_key_fields to take on a character vector

TNRiley opened this issue about 2 months ago

Upload table - add autofill option for easy column completion

TNRiley opened this issue 2 months ago

Update dev from main (after changes to deploy actions)

LukasWallrich opened this pull request 2 months ago

Fix doc warnings and missing package in action

LukasWallrich opened this pull request 2 months ago

Try to resolve textshape install failure

LukasWallrich opened this pull request 2 months ago

Set GH tokens

LukasWallrich opened this pull request 2 months ago

Fix both deploy actions

LukasWallrich opened this pull request 2 months ago

Add manual deploy

LukasWallrich opened this pull request 2 months ago

deploy failure dev shiny

TNRiley opened this issue 2 months ago

Reconsider import as too many RIS versions fail

LukasWallrich opened this issue 2 months ago

Auto-deduplication message shows wrong # of unique records

TNRiley opened this issue 3 months ago

updating dev

TNRiley opened this pull request 3 months ago

Fix deploy conditions

LukasWallrich opened this pull request 4 months ago

Clarify, implement and document the workflow for manual deduplication

LukasWallrich opened this issue 4 months ago

Start working with branches

LukasWallrich opened this issue 4 months ago

Change deploy - main to production, dev to _latest

LukasWallrich opened this pull request 4 months ago

Add explanation of next steps on file upload page of Shiny App

rootsandberries opened this issue 4 months ago

Shiny - filtering issues for (2) plots/tables that rely primarily on n_unique

TNRiley opened this issue 5 months ago

calculate_initial_records includes rows not labeled search

TNRiley opened this issue 5 months ago

error in `synthesisr_read_refs()

rootsandberries opened this issue 5 months ago

Rewrite examples to show real use

LukasWallrich opened this issue 6 months ago

Should dedup_citations always return list?

LukasWallrich opened this issue 6 months ago

cite_label and cite_string not being applied in shiny

TNRiley opened this issue 6 months ago

Add arguments to record_level_table for easy filtering of cite_label and cite_string

TNRiley opened this issue 6 months ago

Rewrite table scripts to rely soley on deduplicated data (for re-imported data)

TNRiley opened this issue 6 months ago

Clarify instruction for manual dedup

LukasWallrich opened this issue 6 months ago

Fix example in compare_sources

LukasWallrich opened this issue 6 months ago

Remove cite_string ?

TNRiley opened this issue 6 months ago

Manual Deduplication Error

TNRiley opened this issue 6 months ago

Deduplication crashes Shiny if there are no duplicates

LukasWallrich opened this issue 6 months ago

Align argument name for citation tibble across functions

LukasWallrich opened this issue 6 months ago

additional fix to handle italicised titles + using latest version of ASySD

kaitlynhair opened this pull request 6 months ago

Add the Precision/Sensitivity Table (precision_sensitivity_table) to tables page

TNRiley opened this issue 6 months ago

Add the Record Summary Table (record_summary_table) to tables page

TNRiley opened this issue 6 months ago

Filter out NA sources from citation summary table source list

TNRiley opened this issue 6 months ago

Add the Record Counts Table (record_counts_table) to tables page

TNRiley opened this issue 6 months ago

Add F-Score to precision_sensitivity_table

TNRiley opened this issue 6 months ago

Re-Importing .ris file from CiteSource (Web Shiny)

TNRiley opened this issue 6 months ago

dedup_citations returns cite_source and cite_label twice

LukasWallrich opened this issue 7 months ago

Changing the export ris function so download RIS works...

DrMattG opened this pull request 7 months ago

calculate_phase_count AND precision_sensitivity_table requirements

TNRiley opened this issue 7 months ago

Deduplication & Table errors when uploading files without URL field (3 Web of Science .ris example)

TNRiley opened this issue 7 months ago

Re-Importing a bibtex file from CiteSource into ShinyApp

rootsandberries opened this issue 8 months ago

RE-Importing a csv file exported from CiteSource into Shiny app

rootsandberries opened this issue 8 months ago

RIS file not exporting from Shiny app

rootsandberries opened this issue 8 months ago

Install standard ci.yaml for r2u use

eddelbuettel opened this pull request 8 months ago

Bring in additional metadata to support dedup

kaitlynhair opened this issue 8 months ago

Admin access to this repo

LukasWallrich opened this issue 8 months ago

Shiny - disconnect from server on upload

TNRiley opened this issue 8 months ago

ASySD dedup fixes

kaitlynhair opened this pull request 9 months ago

Update CiteSource with ASySD functions

TNRiley opened this issue over 1 year ago

Manual deduplication error in shiny

TNRiley opened this issue over 1 year ago

Shiny aesthetics

kaitlynhair opened this pull request over 1 year ago

Dedup fixes

kaitlynhair opened this pull request over 1 year ago

Considerations for the search summary table

rootsandberries opened this issue over 1 year ago

Error in manual deduplication step in Shiny App

rootsandberries opened this issue over 1 year ago

add ability to filter by screened or final labels on upset plot

TNRiley opened this issue over 1 year ago

Increase robustness of calculate_record_counts

LukasWallrich opened this issue over 1 year ago

Treat identical citations always as duplicates?

LukasWallrich opened this issue over 1 year ago

Package size

TNRiley opened this issue over 1 year ago

shiny: metadata editing fails when files have the same name

LukasWallrich opened this issue over 1 year ago

Fix numbers in manual dedup popup

LukasWallrich opened this issue over 1 year ago

.rds use adding R>=3.5.0 dependency

TNRiley opened this issue over 1 year ago

Increase robustness of calculate_phase_count

LukasWallrich opened this issue over 1 year ago

Fix no visible binding NOTE

LukasWallrich opened this issue over 1 year ago

Warning: Undocumented arguments in documentation object 'synthesisr_read_refs'

TNRiley opened this issue over 1 year ago

Consolidated Shiny Items

TNRiley opened this issue over 1 year ago

Difference in deduplication between RAW and PROCESSED data

TNRiley opened this issue over 1 year ago

Inaccurate sensitivity calculation on phase_counts table

TNRiley opened this issue over 1 year ago

Bar chart inaccurate

TNRiley opened this issue over 1 year ago

Add further calculations to tables

TNRiley opened this issue over 1 year ago

unique citations visual

TNRiley opened this issue over 1 year ago

large number of variables on upload

TNRiley opened this issue over 1 year ago

Citiation record table - missing markers

TNRiley opened this issue over 1 year ago

Add Shiny pop out for manual deduplication

TNRiley opened this issue over 1 year ago

Dedup dev

kaitlynhair opened this pull request over 1 year ago

Remove raw data after deduplication in Shiny

LukasWallrich opened this issue over 1 year ago

record_level_table adding Cite_source info on citations

TNRiley opened this issue over 1 year ago

Deploy YAML error

TNRiley opened this issue over 1 year ago

CMD Note on dependencies

TNRiley opened this issue over 1 year ago

Dedup_citations exporting two df again?

TNRiley opened this issue over 1 year ago

Shiny: Maximum upload size

TNRiley opened this issue over 1 year ago

plots: source "unknown"

TNRiley opened this issue over 1 year ago

unique/duplicate Bar chart incorrectly displaying

TNRiley opened this issue over 1 year ago

unique/duplicate Bar chart incorrectly displaying

TNRiley opened this issue over 1 year ago

unique/duplicate Bar chart incorrectly displaying

TNRiley opened this issue over 1 year ago

GitHub actions edits

DrMattG opened this pull request over 1 year ago

Cant build vignettes

DrMattG opened this issue over 1 year ago

Asysd dependency

kaitlynhair opened this pull request over 1 year ago

Add examplecitations as data in the package.

DrMattG opened this pull request over 1 year ago

Create check-and-deploy.yml

DrMattG opened this pull request almost 2 years ago

Check that all exported functions have `@return` and `@examples`

TNRiley opened this issue almost 2 years ago

dedup_citations renames source to journal - problem when data is in journal

LukasWallrich opened this issue almost 2 years ago

Add examples to functions

DrMattG opened this pull request almost 2 years ago

Change order of the vignettes in pkgdown?

DrMattG opened this issue almost 2 years ago

Table creation Initial upload/post internal deduplication

TNRiley opened this issue almost 2 years ago

Deduplication temporarily duplicates entries

LukasWallrich opened this issue almost 2 years ago