Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/ome/omero-guide-qupath


https://github.com/ome/omero-guide-qupath

Merge pull request #11 from jburel/installation

move installation to dedicated file

6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f authored 10 months ago by pwalczysko <[email protected]>
Merge pull request #1 from pwalczysko/fix-link

Fix links to QuPath docs -> use rtd, not outdated wiki

351c1589802b711b9c02daf144aa3f64f5b70274 authored 10 months ago by jean-marie burel <[email protected]>
Fix links to QuPath docs -> use rtd, not outdated wiki

bce1db76cd5997b241ad7cb7c7e95b04c11fa1dd authored 10 months ago by pwalczysko <[email protected]>
move installation to dedicated file

1ba36fceb5209ab39655ac836399fee3002431d1 authored 10 months ago by Jean-Marie Burel <[email protected]>
remove link

9ac0babb4eb3f2daea7533717be059f0a4e241a5 authored 10 months ago by Jean-Marie Burel <[email protected]>
Merge pull request #10 from pwalczysko/further-fixes

Further fixes

adae8fa40c7d5f8de681a9b54e31f274ddb3897d authored 10 months ago by jean-marie burel <[email protected]>
minor edit

63783959488b2cd4255a52534f556b4bf9633840 authored 10 months ago by Jean-Marie Burel <[email protected]>
Explain which artifacts to use

f93df8861f8904dcad8b5364e6473dd5fa2e9caa authored 10 months ago by pwalczysko <[email protected]>
Modify the link to qupath rtd

0040a721d7482ade147aaadc6b9b199eaceddb3d authored 10 months ago by pwalczysko <[email protected]>
Merge pull request #9 from pwalczysko/migration-explanation

QuPath extensions for OMERO migrated - update link

720205a14cb475af611895c493b0b2ce7d8b35a4 authored 10 months ago by jean-marie burel <[email protected]>
review script section

4aec77db1e9e426554dc8250647cae697b6ad61a authored 10 months ago by Jean-Marie Burel <[email protected]>
bump quapth to 0.5.1 and omero-extension to 0.4.0

0f0a3485e45e63c28d58f47959bb9bf47e3e5cd9 authored 10 months ago by Jean-Marie Burel <[email protected]>
Start calling the extension "qupath-omero-web-extension" to match QuPath wording and name of repo

627a50493d7b915b3eee42e73e20e8ad353bd0b1 authored 10 months ago by pwalczysko <[email protected]>
QuPath extensions for OMERO migrated - update link

5c30bf12969b05faedaff8816172f6306de6de42 authored 10 months ago by pwalczysko <[email protected]>
Merge pull request #8 from jburel/rtd_build

fix build failure on rtd

77cc4340c79e77885176b63460c9075ca1e05087 authored over 1 year ago by jean-marie burel <[email protected]>
Merge pull request #7 from pwalczysko/bump

Bump to the last tested version of QuPath

4654269c0834457f1104c6c0258cbc922ff4e0e1 authored over 1 year ago by jean-marie burel <[email protected]>
fix build failure on rtd

921281927b12213364af0accf793bd2128d7914c authored over 1 year ago by Jean-Marie Burel <[email protected]>
remove workflow no longer needed. Build by rtd

85e1625b6f822b99d63754bfc018ad7d773dbfe6 authored almost 2 years ago by Jean-Marie Burel <[email protected]>
Bump to the last tested version of QuPath

96c0297ee385c94fd8cbdf324524154de05b4ec4 authored almost 2 years ago by pwalczysko <[email protected]>
fix doc failure

ef7d55a7be5fdfc7832b446ed799918a404a1437 authored over 2 years ago by Jean-Marie Burel <[email protected]>
Fix badges display

25dbb39a0e15edb2f0e07718f6e8d4f5f8f871e7 authored over 2 years ago by Jean-Marie Burel <[email protected]>
fix layout

9ff63449f4acfa642afed40d16e44cbcf3538670 authored about 3 years ago by Jean-Marie Burel <[email protected]>
bump sphinx version

3ff8fab514df6cdc98e9158697c128b98d196f1e authored about 3 years ago by Jean-Marie Burel <[email protected]>
pin sphinx version

6389d2527b3728622ce94b84a54e552c20cf3876 authored about 3 years ago by Jean-Marie Burel <[email protected]>
disable version

c41f0026847c28921e1b9c1027fb36c55d1dc14f authored about 3 years ago by Jean-Marie Burel <[email protected]>
change config

fe8de65aeb533e011367806cffa4a484da99a8c7 authored about 3 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #6 from pwalczysko/v0.3-QP-workflow

V0.3 qp workflow

bf4bfba0c8e97cbf84c16ffd84c08eb01856bf05 authored about 3 years ago by jean-marie burel <[email protected]>
Remove "derived" Annotations cf. Melvins comment

7e49f727da0c8cba07b17156fd1f47812e8a10e0 authored about 3 years ago by Petr Walczysko <[email protected]>
Replace the two links and format them cf. Melvins comment

e7fc3cc53dbe2bd0bdc047942bc7bb175888a4ea authored about 3 years ago by Petr Walczysko <[email protected]>
Fix typos and reformulate cf. Wills comments

00853dd5d6c8135e1f1e9258864952c96da462e1 authored about 3 years ago by Petr Walczysko <[email protected]>
Cleanup, add screenshots

62f587233921f4b7829a90102cc8730e809afac9 authored about 3 years ago by Petr Walczysko <[email protected]>
Split into correct chapters, add new text, reorganize

133b713293fb06d1c83595faf17d30fd0390c4c1 authored about 3 years ago by Petr Walczysko <[email protected]>
Improve the text, add new facts as tested with QuPath

ce605ef3f07e18e76640597ba940c4f20b597048 authored about 3 years ago by Petr Walczysko <[email protected]>
Initial commit to rewrite the workflow for version 0.3 features

ffbf954ce02251a955204279e418672ca7485ff3 authored about 3 years ago by Petr Walczysko <[email protected]>
Add links to QP docs v0.3

1cafc10bb715518fe47f35db03f65d5965a858cb authored about 3 years ago by Petr Walczysko <[email protected]>
add license file

cbcd10e83caffdad2503fc32735bbf3760a4e382 authored over 3 years ago by Jean-Marie Burel <[email protected]>
.yml is deprecated

982a177951e89aedc80319045be1ace24d2468ce authored almost 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #5 from jburel/remove_travis

Remove travis

b88bec8f7102b2bc8e07be69e9e6fe06b70a6b8f authored about 4 years ago by jean-marie burel <[email protected]>
change link

b3545111964715b28c50f97aca2d999a4c665396 authored about 4 years ago by Jean-Marie Burel <[email protected]>
review link

7f9d8f40e027ba117a1b50d12db9f2ae91d0af2d authored about 4 years ago by Jean-Marie Burel <[email protected]>
remove travis

63f7f11e37e96e797e0ff3aeec47a18f37f224ff authored about 4 years ago by Jean-Marie Burel <[email protected]>
add badge

8bb84de62679fadf7c278d3b5c4aa72c5f3e8aca authored about 4 years ago by Jean-Marie Burel <[email protected]>
add template

984d37fa6694571d4b580d31900d0494fc71b670 authored about 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #4 from pwalczysko/new-workflow

New workflow

28980b8fcb26a420542b9ecc9b4db66e29391d54 authored about 4 years ago by jean-marie burel <[email protected]>
Update docs/qupath.rst

Co-authored-by: Mark Carroll <[email protected]>

fd730d3fc07b8b210c98c05b92aa14184dbcddb7 authored over 4 years ago by pwalczysko <[email protected]>
Remove central pane wording cf. Marks comment

9d0bf5f1005e50fc539d3b04615e942b3cb0f302 authored over 4 years ago by Petr Walczysko <[email protected]>
Update docs/qupath.rst

Co-authored-by: Mark Carroll <[email protected]>

5f16239f1a119b23bc5c7c50c918565b371f8f5d authored over 4 years ago by pwalczysko <[email protected]>
Add warning about large magic wand ROIs and performance

294b78af80544a27eda70b0cad2c32074da90275 authored over 4 years ago by Petr Walczysko <[email protected]>
Bump the versions to the latest tested versions

b5f2148bcc4bf4f228f9b884857da5b80906bc1a authored over 4 years ago by Petr Walczysko <[email protected]>
Add workflow of opening ROIs from OMERO in QuPath

7e71da8c3ebf9cd4614563612cd4ed3b11ac57ec authored over 4 years ago by Petr Walczysko <[email protected]>
Merge pull request #3 from pwalczysko/fix-the-links

Fix links to QP scripts and adjust the version of QP

4368111906945452fb94c48e3c94438f8a068af2 authored over 4 years ago by jean-marie burel <[email protected]>
Merge pull request #2 from jburel/cleaning

Cleaning

0390ab05f8d18adbe8933f0ab455fea69bc36549 authored over 4 years ago by jean-marie burel <[email protected]>
fix one link

94f69b50979d8f682733db42c222ce91597e2738 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Fix formatting, go for backticks, fix obvious errors

dc4f27722193e4f9478e7dfc7463e90e5a3de233 authored over 4 years ago by Petr Walczysko <[email protected]>
Fix command and add explanation cf. Simons comments

5a4f3c0e15705b80f05b4178b6fc923e0a61c224 authored over 4 years ago by Petr Walczysko <[email protected]>
Fix links to QP scripts and adjust the version of QP

2fcffeec1c4a51f2c7f03eaf85c5e8173af6ddaf authored over 4 years ago by Petr Walczysko <[email protected]>
Update README.md

Co-authored-by: pwalczysko <[email protected]>

001974ae585b53ad16a3d301775b6e2fb3fd8ee9 authored over 4 years ago by jean-marie burel <[email protected]>
add contribute section

fd4421434459733c95ee3be29723ed300132142f authored over 4 years ago by Jean-Marie Burel <[email protected]>
update year

f33c80d17bb0f5db0b56f63f7af6507e74d43dae authored over 4 years ago by Jean-Marie Burel <[email protected]>
add dock link

753e745e7e16b77763c37934569832cd2713e11c authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #1 from pwalczysko/roitools

Qupath-workflow-roitools

d7c7936d4d2bb0dd992cf1db0c447d3aa9ba12aa authored over 4 years ago by jean-marie burel <[email protected]>
use version 0.2.1

4218876f9cfdf3acde8ff84f33e2542b5092e4eb authored over 4 years ago by Jean-Marie Burel <[email protected]>
Improve formulation

ca5d96ae591002671d6b700a7c07b91cd4391f61 authored over 4 years ago by Petr Walczysko <[email protected]>
clarify connect

db011b9f2f2fe539099ffa4901b925000adc03d4 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Remove sentence about shapes

c7bd001a01c86172ba9d45d71760007feb47a901 authored over 4 years ago by Petr Walczysko <[email protected]>
add note for websocket

01882469e3da68ccc17ae92ecb4024c370f8bb59 authored over 4 years ago by Jean-Marie Burel <[email protected]>
adjust instructions

0ced6c7f52573dd99fdc0d6470fc900688b1a84e authored over 4 years ago by Jean-Marie Burel <[email protected]>
review link to image

e8a291368a0ead9a9d3db6a609eeca8fd14dfc70 authored over 4 years ago by Jean-Marie Burel <[email protected]>
remove word

2681938c3c727e4c1eb0db3ab7239f1fe97e109e authored over 4 years ago by Jean-Marie Burel <[email protected]>
use https

7138d2bb4b60ed68e3b4a844f23d7b0ddd066e14 authored over 4 years ago by Jean-Marie Burel <[email protected]>
fix header

5b3134849c7f86c3a89471e253d9563784df425d authored over 4 years ago by Jean-Marie Burel <[email protected]>
Explain the IDR and non-IDR data situation

4675e26f6d0e4346175bc15712b4560b947edc7f authored over 4 years ago by Petr Walczysko <[email protected]>
Update docs/qupath.rst

Co-authored-by: Mark Carroll <[email protected]>

855f9b0a093d2d501701c4ddbd3edf23708cbbdb authored over 4 years ago by pwalczysko <[email protected]>
Update docs/qupath.rst

Co-authored-by: jean-marie burel <[email protected]>

24210991aaef81ad7e0a9b2bab29302e11d9320d authored over 4 years ago by pwalczysko <[email protected]>
Update docs/qupath.rst

Co-authored-by: jean-marie burel <[email protected]>

20322775d7a8e72ca924a55193afc6538b5ccd7f authored over 4 years ago by pwalczysko <[email protected]>
Update docs/qupath.rst

Co-authored-by: jean-marie burel <[email protected]>

d5879971193935d459f1145250797ce6b28d87e9 authored over 4 years ago by pwalczysko <[email protected]>
Update docs/qupath.rst

Co-authored-by: jean-marie burel <[email protected]>

7ea3632754029f879ecf06643cd6acfad9bb942f authored over 4 years ago by pwalczysko <[email protected]>
Update docs/qupath.rst

Co-authored-by: jean-marie burel <[email protected]>

73e4a32043cd7f2b54035ee15d69984909e51db8 authored over 4 years ago by pwalczysko <[email protected]>
Update docs/qupath.rst

Co-authored-by: jean-marie burel <[email protected]>

198f8c7766e48e6e3e813c49f88f9732c80fe659 authored over 4 years ago by pwalczysko <[email protected]>
Add top headers

2194cf85ad3c5bcb4eaedab94abfd8f3bf9f6b69 authored over 4 years ago by Petr Walczysko <[email protected]>
Adjust screenshots formats

8319a9ed33cf32f96224c097c22b89156227a03a authored over 4 years ago by Petr Walczysko <[email protected]>
Further improvement of the workflow text

92d534baf72bf134ef637135bef231addea86f31 authored over 4 years ago by Petr Walczysko <[email protected]>
Adjust the workflow for QP 020 and recent roitool changes

d2c2c3103940e1001ac32b6e389d71883c6805fa authored over 4 years ago by Petr Walczysko <[email protected]>
Add missing line for cd to bin

88b8d3d38f655db8e48a03520fd5d1f131a9c442 authored over 4 years ago by Petr Walczysko <[email protected]>
Fix typo

d9610da0042213c70a3a95bd79ba9eba12c9c8fc authored over 4 years ago by jean-marie burel <[email protected]>
Add screenshot, small edits

494b40b16c2a75e7341116f4da9453525cb2ee90 authored over 4 years ago by Petr Walczysko <[email protected]>
Improve text, add notes, improve workflow

4a844ae7575c36cb2d002e40e6804decff419275 authored over 4 years ago by Petr Walczysko <[email protected]>
Rewrite the text adding ome-omero-roitool bits

dddc0cc16a6c9378b0ef529eb89a5d9b9969b0bf authored over 4 years ago by Petr Walczysko <[email protected]>
add info

444c94cf35898dce35537f3756ded6c116737676 authored over 5 years ago by Jean-Marie Burel <[email protected]>
check link in travis

31018400ecd4b1228af3f7f87c4d8f7efb7a22c3 authored over 5 years ago by Jean-Marie Burel <[email protected]>
user # instead of number

12092789966592c721d25e507bad9bb61b344a85 authored over 5 years ago by Jean-Marie Burel <[email protected]>
add config

fb67c10e2aaed631edaacd4c06bb273e106d0ba7 authored over 5 years ago by Jean-Marie Burel <[email protected]>
reorganise repo

147cbc383f1265c2d873c25be47fac023631c5f2 authored over 5 years ago by Jean-Marie Burel <[email protected]>
add qupath instructions

73c7463a788adf08dd17a7a81e1b680f8a0d1cea authored over 5 years ago by Jean-Marie Burel <[email protected]>
Initial commit

760eca7ab31f9e926405fab8e158b148c09ccc30 authored over 5 years ago by jean-marie burel <[email protected]>