Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/ome/ZarrReader


https://github.com/ome/ZarrReader

Fix issues

dominikl opened this pull request about 1 month ago
ZarrReader doesn't read zarrs without top-level 'series'

dominikl opened this issue 2 months ago
Fix class cast and labels issue.

dominikl opened this pull request 2 months ago
Bump Bio-Formats version to 8.0.1

melissalinkert opened this pull request 2 months ago
Multiple PlateAcquisitions: Images in wrong Wells

will-moore opened this issue 4 months ago
Class cast exception when parsing metadata

dgault opened this pull request 4 months ago
`java.lang.ClassCastException` on ZARR import

jo-mueller opened this issue 5 months ago
Bump version to 0.5.3-SNAPSHOT

dgault opened this pull request 5 months ago
Bump version to 0.5.2

dgault opened this pull request 5 months ago
Bump Bio-Formats version to 7.3.1

dgault opened this pull request 6 months ago
Bump version to 0.5.2-SNAPSHOT

dgault opened this pull request 7 months ago
Bump version to 0.5.1

dgault opened this pull request 7 months ago
Add Change Log for 0.5.1

dgault opened this pull request 7 months ago
Bump formats-api version to 7.3.0

dgault opened this pull request 7 months ago
Bumping version to 0.5.1-SNAPSHOT

dgault opened this pull request 7 months ago
Bump version to 0.5.0

dgault opened this pull request 7 months ago
ChangeLog: Add missing entry for PR #75

dgault opened this pull request 7 months ago
Issue with the Microservices when using the OMEZarrReader build from PR 82

khaledk2 opened this issue 9 months ago
Reintroduce S3FileSystemStore

dgault opened this pull request 10 months ago
add Java 17 to testing matrix

jburel opened this pull request 11 months ago
Review action

jburel opened this pull request 11 months ago
Reduce number of fields in memo file

dgault opened this pull request 11 months ago
Index Out Of Bounds when importing to OMERO docker

pwalczysko opened this issue 11 months ago
blosc problem on import of ome.zarr into OMERO

pwalczysko opened this issue 12 months ago
Update handling and parsing of acquisition metadata

dgault opened this pull request 12 months ago
JZarr: Add jackson.core and jackson-databind to exclsions

dgault opened this pull request about 1 year ago
Update ReadMe and Change Log

dgault opened this pull request about 1 year ago
OMEZarrReader.jar download link to artifactory

will-moore opened this issue about 1 year ago
Bump Bio-Formats to version 7.1.0

sbesson opened this pull request about 1 year ago
Bump version to 0.4.1-SNAPSHOT

dgault opened this pull request about 1 year ago
Bump version to 0.4.0

dgault opened this pull request about 1 year ago
Future API updates

dgault opened this issue about 1 year ago
NGFF Testing

dgault opened this issue about 1 year ago
Bump dev.zarr:jzarr to 0.4.2

sbesson opened this pull request about 1 year ago
Bumping Bio-Formats version to 7.0.0

dgault opened this pull request over 1 year ago
ZarrReader performance improvements

dgault opened this pull request over 1 year ago
Memo file generation - performance

will-moore opened this issue over 1 year ago
Update README.md

joshmoore opened this pull request over 1 year ago
Deps missing from B-F update site

joshmoore opened this issue over 1 year ago
Correct README regarding jzarr library

joshmoore opened this issue over 1 year ago
Actions update

jburel opened this pull request over 1 year ago
Add new option to list pixels in getUsedFiles

dgault opened this pull request over 1 year ago
Use canonical path for calls to ZarrService

dgault opened this pull request over 1 year ago
remove duplicate declaration

jburel opened this pull request over 1 year ago
ClassCastException when parsing acqusition start time

dgault opened this issue over 1 year ago
Move to dev.zarr:jzarr

joshmoore opened this pull request over 1 year ago
Reorder group keys

dgault opened this pull request over 1 year ago
Try to reproduce Well reordering issue with Fileset swapping

will-moore opened this issue over 1 year ago
Bump version to 0.3.2-SNAPSHOT

dgault opened this pull request almost 2 years ago
Bump version to 0.3.1

dgault opened this pull request almost 2 years ago
ZarrReader: Update handling of pre-existing plate metadata

dgault opened this pull request almost 2 years ago
NPE: Using idr0138

jburel opened this issue almost 2 years ago
upgrade setup-java action. Current version uses set-output

jburel opened this pull request almost 2 years ago
Document blosc requirement

joshmoore opened this issue almost 2 years ago
"Unable to load library 'blosc'" error when reading pixel data

aoles opened this issue almost 2 years ago
Multiple multiscales

will-moore opened this issue about 2 years ago
Fail on import of a plate

pwalczysko opened this issue about 2 years ago
switch to new output command

jburel opened this pull request about 2 years ago
ZarrReader: Update getUsedFiles to use the noPixels flag

dgault opened this pull request over 2 years ago
NGFF Plate import - slow and OOM due to many files

will-moore opened this issue over 2 years ago
Import of zarr into OMERO merge-ci latest-ci

pwalczysko opened this issue over 2 years ago
Dependency updates

dgault opened this pull request over 2 years ago
Import of zarr is slower

pwalczysko opened this issue over 2 years ago
naming of images in omero

pwalczysko opened this issue over 2 years ago
Test xarray compatible datasets

joshmoore opened this issue over 2 years ago
No original metadata

pwalczysko opened this issue over 2 years ago
HCS and handling of row/column index keys

sbesson opened this issue over 2 years ago
Integration with Bio-Formats

sbesson opened this issue over 2 years ago
ZarrReader: Add support for OME-XML from bf2raw

dgault opened this pull request over 2 years ago
Minor adjustments

jburel opened this pull request over 2 years ago
Remove dependency

jburel opened this pull request over 2 years ago
ZarrReader: Add support for OME-XML from bf2raw

dgault opened this pull request over 2 years ago
Wrong pixel values in ome.zarr made from ome.tiff

pwalczysko opened this issue over 2 years ago
Detection of files not inside the zarr folder if nested into another .zarr folder

pwalczysko opened this issue over 2 years ago
Multi-file images do not import correctly if nested in a .zarr folder

pwalczysko opened this issue over 2 years ago
ZarrReader: HCS validation fixes

dgault opened this pull request almost 3 years ago
Fixes for dimension and tiling issues

dgault opened this pull request almost 3 years ago
HCS validation errors

sbesson opened this issue almost 3 years ago
ZarrReader: Fix for plates with no acquisitions

dgault opened this pull request almost 3 years ago
ZarrReader: Use chunk API

dgault opened this pull request almost 3 years ago
Plates with no acquisitions metadata throw a NPE

sbesson opened this issue almost 3 years ago
Incorrect handling of images with labels

sbesson opened this issue almost 3 years ago
Incorrectly detected dimensions and tile sizes

sbesson opened this issue almost 3 years ago
OS X arm64 support (jna dependency)

sbesson opened this issue almost 3 years ago
Unidata dependency unification

sbesson opened this issue almost 3 years ago
Add standard build metadata to the JAR manifest

sbesson opened this pull request almost 3 years ago
Add BSD-2 license

sbesson opened this pull request almost 3 years ago
Small jar deployment

joshmoore opened this pull request about 3 years ago
Activate tests in maven

joshmoore opened this pull request about 3 years ago
Drop uber jar ?

joshmoore opened this issue about 3 years ago
Extend workflow to upload built JAR as a CI artifact

sbesson opened this pull request over 3 years ago
ZarrReader: Update to support 0.4.0 datasets

dgault opened this pull request over 3 years ago
Replace Doubles with Integers

joshmoore opened this pull request over 3 years ago
Pass 'level' to CompressorFactory

joshmoore opened this pull request over 3 years ago
ZarrReader: NPE and parsing fixes

dgault opened this pull request over 3 years ago
Bump to SNAPSHOT for merge build

joshmoore opened this pull request over 3 years ago
ZarrReader: Add Unit tests

dgault opened this pull request over 3 years ago
Actions

jburel opened this pull request over 3 years ago
Initial Prototype ZarrReader

dgault opened this pull request over 3 years ago