github.com/ome/ZarrReader commits | Ecosyste.ms: OpenCollective

Merge branch 'main' into dependency-updates

81f05cb540961f1201e044c311b5375a17026c20 authored over 2 years ago

Remove AWS dependencies

a195d7c8c51eb6fea0aafc73b92e8efcf4e0b25e authored over 2 years ago

Remove dependency on commons-io and netty-nio-client

feb149259ca6fd11454ddefcd2929d48186e04f2 authored over 2 years ago

Bump formats-api to 6.10.0

45ec49fd819a4478827a5668734c5225b7428410 authored over 2 years ago

Bump version to 0.2.1-SNAPSHOT

debc0572e1f18fa9ffc602946d193e36116591ff authored over 2 years ago

Bump version to 0.2.0

cb17882c42cfddccceeff97adb33fb152038b956 authored over 2 years ago

Merge pull request #31 from dgault/OME-XML-Support

ZarrReader: Add support for OME-XML from bf2raw

f2f7c39e5ca64947626e14b1324836892414078a authored over 2 years ago

Add null check for maximumfieldcount

83843bc9b03b058defe424612a9018a0f42188b6 authored over 2 years ago

Remove previous PyramidResolution annotations

135e888e5aa63ec6b677de2c5deb3de8be78b3f6 authored over 2 years ago

Trust OME-XML plane data if present

063d8fe21598bf55d5c24a2700cfd83c158af0d0 authored over 2 years ago

ZarrReader: Support multiple variations of well row and col

caae5375b7e742f5715b178cbbd315d35b044a57 authored over 2 years ago

ZarrReader: Populate original metadata

b904648001ee1c0acf336845f356e7c5000a2fb7 authored over 2 years ago

ZarrReader: Fix for multi image multi res indexes

3c268549dd83fe6455a8d23672f9bac47fc5c57b authored over 2 years ago

Merge remote-tracking branch 'origin/OME-XML-Support' into OME-XML-Support

# Conflicts:
# src/loci/formats/in/ZarrReader.java

2e57d44ff39fc70abab84afd2550d70964c98c2f authored over 2 years ago

ZarrReader: Resolve conflicts for OMEXML parsing

9d07d1a5c5bdbeff0591a8aa904e450a12d644df authored over 2 years ago

Bump version to 0.1.6-SNAPSHOT

649a60e33c9f91323f571abef4454118da6b3d73 authored over 2 years ago

Bump version to 0.1.5

cfafa1dcab02dc236fd7f41c2394c525e9230332 authored over 2 years ago

Add CHANGELOG for 0.1.5

81bc987e0766378237eaf593cafa7ca68ab2e3f0 authored over 2 years ago

Merge pull request #24 from dgault/0.4-HCS-validation

ZarrReader: HCS validation fixes

33deebc4aaaa636c8e4ee5df4b50f153eeb08c49 authored over 2 years ago

ZarrReader: Fix for multiRes HCS

c4d2d7a01943852ed3d07118bae230d2d1ba94f2 authored over 2 years ago

Update ZarrReader.java

574fddbb6796175a690a2865a29a05e71e964e76 authored almost 3 years ago

Merge 'origin/main' into 0.4-HCS-validation

f8bca984dd3849459a74ab0c81fdadc3c3a52917 authored almost 3 years ago

revert to snapshot

d3eb7b8b65981e068d0cb40ecc95348a7c3cfd15 authored almost 3 years ago

remove snapshot

d12f5174d8935688c07c0d205c5adc82391007c2 authored almost 3 years ago

add changelog

a4b3e5e5b215c09533e50c7d29814d5ee5b540f2 authored almost 3 years ago

Merge pull request #29 from jburel/test_dependencies

Remove dependency

7834494f2a108b3afed879d9cc976d264d1d5e6f authored almost 3 years ago

remove duplicate

b5b79b8663fc83a2cad87c4d54bd900b9b6fcac8 authored almost 3 years ago

remove dependency

e32eb4764c347d2e951acb25967973452ba6acad authored almost 3 years ago

remove dependency on StringUtils

5e846022ce6496077f02f2de496e9b18bafcf8af authored almost 3 years ago

indicate the scope of the dependency

503a80d982ad56976015befafab651af402b1156 authored almost 3 years ago

ZarrReader: Add support for OME-XML from bf2raw

506f4213b7982f10e71e3ae2d104b2a00618898a authored almost 3 years ago

ZarrReader: Fixes for 8bit data and default dimensionOrder

b02bfbbdea9da77db61d65466b476c5d439c86da authored almost 3 years ago

Merge branch 'main' into 0.4-HCS-validation

155f3ba0479fcda6012119838749d371bcdf13a4 authored almost 3 years ago

Bump version to 0.1.4-SNAPSHOT

caf311bb435cfdff4f50b9e5f4fc600a4250d33a authored almost 3 years ago

Bump version to 0.1.3

20ccbe52ff68bb8f7af0ed460c6cc29b0e31ffb8 authored almost 3 years ago

Merge pull request #23 from dgault/0.4-dimension-tile-fixes

Fixes for dimension and tiling issues

f6ae5bac99c4ba65fa4310f43a30def6adb0b991 authored almost 3 years ago

ZarrReader: DimensionOrder fixes

ce6872abaef6f2511f2578e2effa7ba66a4fc159 authored almost 3 years ago

ZarrReader: Use axes instead of _ARRAY_DIMENSIONS

08a10d641d39ed70292812512dcd1e7bb04be0ae authored almost 3 years ago

ZarrReader: HCS Multi-Res fixes

7d318ea77b565a43f7ce4e57a9aec6c67c61bfdd authored almost 3 years ago

ZarrReader: HCS validation fixes

ed0a7c62256cd900fb71aa7b2da03949528cb908 authored almost 3 years ago

ZarrReaderTest: Update tiling tests

400d73b09d8c3cdcbc1e7056c28cb7e5dd4f16c5 authored almost 3 years ago

ZarrReader: Correct spelling of acquisitions variable

77d827bb8912b2c4f878c72ce50269dc5e450d80 authored almost 3 years ago

ZarrReader: Fix tile sizes

2212710cab56b3f3ee017ef43d15019d47fa80ba authored almost 3 years ago

ZarrReader: Make use of _ARRAY_DIMENSIONS

731d61709d504bdfd3e933669355f85b922d9e33 authored almost 3 years ago

Bump version to 0.1.3-SNAPSHOT

6aff96c5b06003b0635c597ea8ddb6bb4413316a authored almost 3 years ago

Bump version to 0.1.2

4098bd20e5b26fd067c8d56bcc76027416b1f698 authored almost 3 years ago

Merge pull request #21 from dgault/0.3-plateFix

ZarrReader: Fix for plates with no acquisitions

ecef503dfb107e8b7910cd7b87d37c73aa23a067 authored almost 3 years ago

ZarrReader: Fix for 0.3 spec plates

511b882d5d71065dc666b9c9d4377252cae377b9 authored almost 3 years ago

Bump version to 0.1.2-SNAPSHOT

5dc1622907708b01ed3812a94dfb87d8c79c1bcf authored almost 3 years ago

Bump version to 0.1.1

3a39b71deee679262835fc9931327a6953efffa1 authored almost 3 years ago

Merge pull request #8 from dgault/0.3.0-support

ZarrReader: Update to support 0.4.0 datasets

eff85d64e7b6dc9ec138df758355a3b00d2bf7d8 authored almost 3 years ago

ZarrReader: No need for x offset when unpacking bytes

be1920894b2c4a5de713d3157365da74f063e4af authored almost 3 years ago

ZarrReader: Multiscale fixes when no flat

13c9bbcd3d0a259e204fe0d2f6c3cc534b80e47f authored almost 3 years ago

Merge pull request #14 from sbesson/mvn_manifest

Add standard build metadata to the JAR manifest

8cefdc5d7cf2efca241eb72f346a8ee829b02da3 authored almost 3 years ago

Add standard build metadata to the JAR manifest

25b360c5cba9364abdbcdcc43cc14802ba5f9c11 authored almost 3 years ago

ZarrReader: Plate and Well fixes

f962c218b6c006cfbf54af9e6af61e5bd9a26553 authored almost 3 years ago

ZarrReader: Only use relative path for resolution data

401d8b2432fdfacd01ba37b67d4682f2efb7ccea authored almost 3 years ago

Merge pull request #13 from sbesson/bsd

Add BSD-2 license

8c3f253a6a1e4d747fb2cbc2f07ed22b3e8fbe48 authored almost 3 years ago

Set requiredDirectories to 1 to preserve the .zarr folder

a196f3913ace3d1d5c2f56f68102727b3be0f765 authored almost 3 years ago

Use more generic project name refering to NGFF

0ef940a34f38cbc8ddab6feae2797214fa9190ae authored almost 3 years ago

Add support for 0.4 axes and coordinateTransformations

fed421b179f41776c8ff2050de97e473a5bfeedc authored almost 3 years ago

Apply mvn license:update-file-header

7f270e9d283ba8a8350f2cb8f1a35da0f2cf3067 authored almost 3 years ago

Add minimal metadata to manage the license header

5969ae1684a770f1c3ab665dee71b4aff0882d26 authored almost 3 years ago

ZarrReader: Filter out directories from usedFiles

dd2cecd113e0cce9c695ebd5e5189541ce7dfe36 authored almost 3 years ago

Move to 0.1.1-SNAPSHOT

4558c079ff1ae23b38b1c53156e11266bab17eb1 authored almost 3 years ago

Tag 0.1.0

30462492d993455432e24ba0eb1480beba037614 authored almost 3 years ago

Merge pull request #12 from joshmoore/small-jar

Small jar deployment

91902983d78fc652207f770b76675851d2a9523f authored almost 3 years ago

Fix jzarr 0.3.4 bump compile issues

e04db9a1971125107fcdd02ad2b364087a399775 authored about 3 years ago

Ignore intellij file

5b2d467a857ef97d3d89b67b00128147f177065f authored about 3 years ago

Solve 'mvn test' warnings

1047d41b064f0ef1aefa8ba9f681b09d844a04ed authored about 3 years ago

Use non-snapshot jzarr

cec544d11db92dec8e6cc78c1aa3de2115cd154f authored about 3 years ago

Omit jar-with-dependencies from artifactory deployment

b695bfef045896e88ca4ddd5af93363c72452a72 authored about 3 years ago

Build a .jar and a jar-with-dependencies.jar

```
(base) /opt/ZarrReader $ls -ltra target/*.jar
-rw-r--r-- 1 jamoore wheel 35331 Dec 2 ...

69573ba8d8ba001c57b18a6cb289f3fa5cc16239 authored about 3 years ago

Merge branch 'main' into 0.3.0-support

e0bb79b4af6a4191a297e93eab11cffd11d47c72 authored about 3 years ago

Merge pull request #11 from joshmoore/fix-tests

Activate tests in maven

08a1c6c0beda982d167067efed930efbb03f9685 authored about 3 years ago

Activate tests in maven

By adding the testSourceDirectory, the `mvn test`
target can be used in intellij to run tests. T...

9bde5733be175dac5750eaa6e0a01b896404865e authored about 3 years ago

Merge 'origin/main' into pr-8

c5aad70a9a5d043c0b36f9d278792e18baead255 authored about 3 years ago

Merge pull request #9 from sbesson/artifact

Extend workflow to upload built JAR as a CI artifact

6ae40f7f7cec41cf967c99abb557a444afc56290 authored about 3 years ago

Make artifact upload conditional

f404f5aca98cce95f9a5c7f5bd203d1c9b3b98b8 authored over 3 years ago

Add GitHub workflow step to upload built artifacts

89434bf35a18be6c447b408ff41cfccf952356ad authored over 3 years ago

ZarrReader: Update to support 0.3.0 datasets

f214a66f881afb047ecb9d1fd76de2d6ae7374a9 authored over 3 years ago

Merge pull request #7 from joshmoore/fix-doubles

Replace Doubles with Integers

578bb27b49ef9e14fac66b7d8f56e5296b95e671 authored over 3 years ago

Use Number.doubleValue to handle JSON parsing

The JSON library sometimes returns a Double and sometimes
an Integer. Since we expect this field...

8d7904bfc118024cbab2815452e365d8f7f91420 authored over 3 years ago

Replace Doubles with Integers

443231c278d699f9ff22bf6e794dc3743ee1625f authored over 3 years ago

Merge pull request #3 from dgault/unitTests

ZarrReader: Add Unit tests

94ebdd7dae1b53431019af6d7b6fae586fd58d71 authored over 3 years ago

Merge branch 'main' into unitTests

e98039800fbe182a987faee268e0be173b212f6b authored over 3 years ago

Merge pull request #4 from joshmoore/0_1_0

Bump to SNAPSHOT for merge build

4316fb287993702c96f458c5e29e2c16686439ae authored over 3 years ago

Revert to formats-api dependency

aa001defc2ec20f123f6111f5e01538ff358ad7a authored over 3 years ago

Merge pull request #6 from joshmoore/compr-level

Pass 'level' to CompressorFactory

991e599a053c3e061a83e12d0481591bacae76b6 authored over 3 years ago

Merge pull request #5 from dgault/NPE-fixes

ZarrReader: NPE and parsing fixes

b4f4dcf8d42e0402cc9459978816ce36d9ce2c99 authored over 3 years ago

Drop unused parameters from `null` codec

b1e28edd1f1846f454466ec9c0d6a96927544c08 authored over 3 years ago

Pass 'level' to CompressorFactory

f62a220a694cb784ae974ea2448cd987cc33d442 authored over 3 years ago

Depend on bio-formats-tool for testing purposes

9ff49ca1c4492797c4ce53ac4a306c78abe7e910 authored over 3 years ago

Bumping formats-api to 6.7.0

39147ef477cbb27a008f1c69ef78bc63ffb0e58b authored over 3 years ago

ZarrReader: NPE and parsing fixes

0513f8471b7022dbc4c02f8f91bd7adf2a6f550c authored over 3 years ago

Copy required pom.xml changes from #3

3b65ac1846b126a898ce59bb8415ed2338c14d87 authored over 3 years ago

Bump to SNAPSHOT for merge build

3ec6d6285c91543d943a93113c1f4e4324596939 authored over 3 years ago

Update maven repos from http to https

9448561f1b8e9d885a8d2e875e1213e8690c6335 authored over 3 years ago

Change scope of testing

c1cf883df04138664c9440df277ee8195a2aeb6d authored over 3 years ago

Remove unused ZarrServiceMock

fb56f3b96ae9cdee02d35cd56717be8914070e89 authored over 3 years ago