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github.com/BioJulia/SequenceVariation.jl

Biological sequence variation
https://github.com/BioJulia/SequenceVariation.jl

[Feature]: Add `alignment` and `cigar` getters

MillironX opened this pull request over 1 year ago

[Feature]: Add checker for contradicting `Variation`s and `Haplotype`s

MillironX opened this issue over 1 year ago

[Feature]: Add ability to `translate` from one haplotype to another

MillironX opened this issue over 1 year ago

[Feature]: Add getter for alignment of a haplotype to its reference

MillironX opened this issue over 1 year ago

Release v0.2.2

MillironX opened this pull request almost 2 years ago

Fix validation for Haplotypes

MillironX opened this pull request almost 2 years ago

Multiple `Substitution`s doesn't invalidate `Haplotype`

MillironX opened this issue almost 2 years ago

Release v0.2.1

MillironX opened this pull request almost 2 years ago

Better error descriptions

MillironX opened this pull request almost 2 years ago

Release v0.2.0

MillironX opened this pull request almost 2 years ago

Add `isless` for `Edit` and `Variation`

MillironX opened this pull request almost 2 years ago

Add `translate` functionality for haplotypes

MillironX opened this pull request almost 2 years ago

Refactor `reconstruct` function

MillironX opened this pull request almost 2 years ago

Rename `Variant` to `Haplotype`

MillironX opened this pull request almost 2 years ago

Organize/stylize code and docs

MillironX opened this pull request almost 2 years ago

Release v0.1.4

MillironX opened this pull request about 2 years ago

Fix softclips causing Variant construction errors

MillironX opened this pull request about 2 years ago

Soft clips cause invalid Variants

MillironX opened this issue about 2 years ago

Release v0.1.3

MillironX opened this pull request about 2 years ago

Add type parameterization to variations getter

MillironX opened this pull request about 2 years ago

Release v0.1.2

MillironX opened this pull request about 2 years ago

Update dependencies

MillironX opened this pull request about 2 years ago

Unambiguate type nomenclature

MillironX opened this issue over 2 years ago

Release v0.1.1

MillironX opened this pull request over 2 years ago

Add constructor for Variant based on Variations

MillironX opened this pull request over 2 years ago

TagBot trigger issue

JuliaTagBot opened this issue over 2 years ago

Add reference and alternate base getters for Variation

MillironX opened this pull request over 2 years ago

CompatHelper: bump compat for BioSymbols to 5, (keep existing compat)

github-actions[bot] opened this pull request over 2 years ago

CompatHelper: bump compat for BioSequences to 3, (keep existing compat)

github-actions[bot] opened this pull request over 2 years ago

Feature: Create functions to get reference and alternate bases from `Variation`

MillironX opened this issue over 2 years ago

Prepare for package registration

MillironX opened this pull request over 2 years ago

Add functions to get `Variation`s from `Variant`

MillironX opened this pull request over 2 years ago

Add equality functions for Variation

MillironX opened this pull request over 2 years ago

Feature/variations-parse

MillironX opened this pull request over 2 years ago

Feature request: Include in GeneticVariation or register as standalone package

MillironX opened this issue over 2 years ago

Feature request: Add a function to create `Variations` from edit strings

MillironX opened this issue over 2 years ago

Feature request: Add equality functions for `Variation`

MillironX opened this issue over 2 years ago

Feature request: Add method to extract `Variation`s from `Variant`s

MillironX opened this issue over 2 years ago

Fix inconsistent Variation positions

MillironX opened this pull request over 2 years ago

Fix show function for Variations with Insertion edits

MillironX opened this pull request over 2 years ago

[Bug]: `Variation`s from different starting places give incorrect positions

MillironX opened this issue over 2 years ago

[Bug]: Cannot `show` `Variation` of `Insertion`

MillironX opened this issue over 2 years ago