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github.com/BioJulia/SequenceVariation.jl

Biological sequence variation
https://github.com/BioJulia/SequenceVariation.jl

Merge pull request #16 from MillironX/feature/getbases

6a77d6d58928c69083bc7f1c3d07dcbd40c874c0 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Update CHANGELOG

1cfe128070f55c582688abf11ce081cc7112ee52 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add VCF spec tests for reference and alternate bases

97e1d193a64b06f298c990076dc83aeaf3b87e44 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add public alternate base getter for Variation

b8e44c7b815f2021fddc022822737f02a46503e3 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add public reference base getter for Variation

cab314ec0baaa8b076cea5b8cbcfd86ce0aa71b1 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add private alternate base getter for Insertion

ccbe6eed62ff2c96b115323d50d6faaa70655cf3 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add private reference base getter for Insertion

1b7c7f86d78ef68020810595e273515e018b2273 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add private alternate base getter for Deletion

145e9e5f8853072c47b3cd004d0a3783810c9372 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add private reference base getter for Deletion

bc073eaf20b807cb4c4be8a36f6b5c5eda069bc0 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add private alternate base getter for Substitution

c1f47c7b223ff789091b170b4e8ce48e7d69bbb4 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add private reference base getter for Substitution

73c2c2764f520e8e2b963bfae6b6371fd1c2c0fe authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Fix reference(::Variation)

`reference(::Variation)` used the wrong field name. Fix that so I can use
it downstream.

a80ff869ce1243a2c832abebbfc26fcf6c97fc24 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Remove 32-bit arches from unit testing CI workflow

32-bit is causing problems in an upstream package, and I'm not sure why, so remove it for now.

ece50c1ee98fc0939a185acbd117ef23475d99e4 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Fix iterator error in API auto-documentation

467fa4d261b6a950d5aad1cf7ad10f6953ceecff authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Update Documentation CI workflow to use julia-actions workflows

1c9511310ff2a54049d3602a89dcd47b7dce8d59 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Update CI Unit Tests job name to match parameters matrix

9920ad25177f9983083f84c17c63cfffecdc8fbd authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Update CI Unit Tests job name to match parameters matrix

03a4eb392dfa628ea6ea75371d7d47d2de9f8ca7 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Merge pull request #12 from MillironX/registration-prep

Prepare for package registration

976d5b3a3d503c9a2c46403f53057b07605ff54b authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add README

2ccc2551f57750922c279785c7f48997241aa40d authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add a changelog

60cf5c1b0a8c990f84b2bdde850e469750dd9f24 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add license

e8bb2f6f8ef6d0afca38b06ab3f360b6c67279e6 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add compat section for all dependencies to Project.toml

f7f9e3190c49da078b9d84ec83b694edf32bcad9 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add Thomas Christensen as author in Project.toml

a461152e555b47ae378cb38e5627ed5759548bab authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Update documentation

3d03740741310f34462707c8322a0be01a47b8eb authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Run DocumenterTools.generate()

4ef7ba4450082ac3013a5cdc425dce78a1b8a812 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add pull request template

39f3de83ad7519425a59a1b8cf935641396cc815 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add feature request template

15420d4f52afe332d81c40b5ba72dfda500662f5 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add bug report template

e4300d020aa2d6801db8af4657bf9d1b0d17b416 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Install JuliaRegistrator

72611659f1ea549d41197bc10bdee098320ce501 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add CompatHelper workflow

23f75aad22978dc5297a179fa99352d05d66dbb9 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add unit testing workflow

6e2eab42c7a7d23fccc78bd0c9dd22dd5659c17d authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add TagBot workflow

c5b28e282fcffaf2bf2fa99bc1774869fd63144c authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add documentation workflow

48470028cac6e2282daac6545ebf4bdaf9b99aa8 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add Julia gitignore

a1f55d1c7078bab10d65a375f97efa4f8201af66 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Remove Manifest.toml

d9cd1fb33fe44b89caa14629ab5f804c67f3a0ec authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Merge pull request #11 from MillironX/feature/variations-from-variant

e79968c4eceea510f8c893cb310b66ff4de79676 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add tests for variations function

36cbd5abb9464c4d5d138eba9e6727ddb8e54565 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add function to get variations from variant

6d7a93604a3f1c4ab5507b5f4f89ce861d29e6b1 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add accessor functions for Variant

dbdc575d757f1a63bc3ce8d3bcea18d5d8ff354c authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add rightposition functions

89cad0120f64d334f133c23c260d832fdac86034 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Merge pull request #10 from MillironX/feature/variation-equality

538b612fafb2f9a8f4c4b246f93a89904cc06802 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add hash function for Variation

fe1bbcc0f37b02967e01957533a0022e9b9a3f0b authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add equality function for Variation

70965732cf7b9abcadaf247bd2caab661dfd9c2c authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Merge pull request #9 from MillironX/feature/variations-parse

5f7d5e59a14d5a8e7ef283581f408ddf46498369 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add tests for Variation parsing

6bc1528d18ac2bbda9f48c2ebffe2cb51201e9a0 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add accessor functions for Variation properties

2d05b233a9222c925aadcd2b1b2155d5612904ee authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add accessor functions for Edit properties

1e6f6ea0756ad73d04da5c018e1939ff2af3cdb6 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add BioGenerics dependency

101f4016353ea4e47a7e36d85695e6adfbcfe05b authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add test dependencies to project file

9967ff4df26f2639a7815536f62dbe2b2aaac0de authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Add Variation constructor based on edit parsing

76d5b6059e922dc80f68ee0aca7fa384242576b4 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Fix inconsistent Variation positions (#4)

* Change Variant constructor to use alignment positions

Signed-off-by: Thomas A. Christensen ...

ade9b7e41d2f28bc36850ed4c1e72d7e913e8937 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Fix show function for Variations with Insertion edits (#3)

Signed-off-by: Thomas A. Christensen II <[email protected]>

d0f0f65d7f77d4103dffed0188202f8b458211d8 authored over 2 years ago by Thomas A. Christensen II <[email protected]>
Implement translate

92a2d40553f4d7e5c6e7e757543b81526f7b79b4 authored almost 3 years ago by Jakob Nybo Nissen <[email protected]>
More stuff

8024d5088953357353cd123eacfecf1c8ef98b16 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
Full rewrite

87277268f67564a87580745e5be6efb86a73abe0 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
Add parsing

642658f5920139fe4cb5e0bba6d16069c24793b3 authored almost 4 years ago by Jakob Nybo Nissen <[email protected]>
Switch to SumTypes

354f18e0e49abe9a45378ef47c8e5fce8781bd13 authored almost 4 years ago by Jakob Nybo Nissen <[email protected]>
Start fixing

40749eb6f5eec175f11025eb756666a8694d8f0c authored almost 4 years ago by Jakob Nybo Nissen <[email protected]>
Rewrite

64ae3bc862f4bbdcf3c43db72171e16749f6a6e2 authored about 4 years ago by Jakob Nybo Nissen <[email protected]>
Initial commit

ad3fe4303f29b59a0fe765c0644cbf243c368bb6 authored over 4 years ago by Jakob Nybo Nissen <[email protected]>