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github.com/BioJulia/ReadDatastores.jl

Datastores for reads, not your papa's FASTQ files.
https://github.com/BioJulia/ReadDatastores.jl

Merge pull request #19 from M-PERSIC/master

Enable documenter-dark theme, add minimum compat entries for docs dependencies

52741ee57dfc456fffee97de36153fb1a53c4679 authored over 1 year ago by Michael Persico <[email protected]>
Enable documenter-dark theme

9db068110dd085b832004a5c76446cb9f2872c94 authored over 1 year ago by Michael Persico <[email protected]>
replace Array{T, 1} with Vector{T} (#18)

149259b50603f830aa9bf9a3be4a71b5a898159e authored over 1 year ago by Hiroki Ban <[email protected]>
Bump BioSequences/FASTX to v3/v2 (#16)

Bump BioSequences/FASTX to v3/v2

ac218f6a407b4ba7725d36781e0b04ef3d107ebc authored almost 2 years ago by Hiroki Ban <[email protected]>
Update TagBot.yml

e7d198c62bb55427ade170babc00cb70c7de308c authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

26f6e24afb64ed4fb1a3b09f7d6c0792db02df45 authored over 4 years ago by Ben J. Ward <[email protected]>
Support Julia LTS versions (#15)

b1713a5cecec0940ee73ccb87150a98f57f7d539 authored over 4 years ago by Ben J. Ward <[email protected]>
Update docs.yml

eda468b11494199d18f58b698d7ad619bcf33cdd authored over 4 years ago by Ben J. Ward <[email protected]>
Update testing.yml

2eba10c47ff3a00226c30709228c5f622782745d authored over 4 years ago by Ben J. Ward <[email protected]>
Delete ci_prep.jl

e96bb24440ae0a21da3084dd2dd2ddd4c9e8174e authored over 4 years ago by Ben J. Ward <[email protected]>
Update .travis.yml

7247ca48d9b125889d33b6ae27e5465b9081dad7 authored over 4 years ago by Ben J. Ward <[email protected]>
Update CompatHelper.yml

13de9b5c89bd0e87402de8fb084760369880c76d authored over 4 years ago by Ben J. Ward <[email protected]>
Update index.md

1f99623027d919f4011170fd9ab87de572fdbd3b authored over 4 years ago by Ben J. Ward <[email protected]>
Update README.md

9fbf8e93f949971bfd90ecd00089d534dafcb138 authored over 4 years ago by Ben J. Ward <[email protected]>
Implement ReadDatastore specific exceptions for file validation (#14)

4342a6937bfeb7a35a792ff38ae92309c9f1fec1 authored over 4 years ago by Ben J. Ward <[email protected]>
Update version number

7452ac5fd2c4ead72b4307c0f8896b7879a258d8 authored over 4 years ago by Ben J. Ward <[email protected]>
Add more openreads options

d13ad9277a9c4c52a53ee074a9e48482a7cd78a2 authored over 4 years ago by Ben J. Ward <[email protected]>
Improved opening of datastore files (#13)

d6bdae5dfbb701f9e8c8b4499511799314a81c01 authored over 4 years ago by Ben J. Ward <[email protected]>
Export Datastorebuffer

e902d27be69c72f6b20e2583d173185b8cad5738 authored almost 5 years ago by Ben J. Ward <[email protected]>
Add julia compat statement

1ec04559c4611955afbad6a7a4f77fff73e03aea authored almost 5 years ago by Ben J. Ward <[email protected]>
Add DOI badge

df72695377960482b529881c1cdb6844d7a8a80c authored almost 5 years ago by Ben J. Ward <[email protected]>
Multiple encodings for ReadDatastores (#12)

66367d6a4113c567fe8416bddd536b772a06550d authored almost 5 years ago by Ben J. Ward <[email protected]>
Use symbols for names instead of strings (#10)

ad0de834565428973fce5eb0345fe4865ee64482 authored almost 5 years ago by Ben J. Ward <[email protected]>
Don't test Windows

1569bc5afcd5380a29e62df4979d50eb00fce208 authored almost 5 years ago by Ben J. Ward <[email protected]>
Add GitHub actions

c9217da91cca03154291940d304a5e39012fe4d3 authored almost 5 years ago by Ben J. Ward <[email protected]>
Additional docs

d41167bb2fd2c968be5ab3be71cefd42ef6d0668 authored over 5 years ago by Ben J. Ward <[email protected]>
Add option to rename a datastore as you open it

9ef6e6d5f563d79219a675bbd23eb2f26e864d42 authored over 5 years ago by Ben J. Ward <[email protected]>
Add indexing and iteration docs

aad3978e286d6ee97679dd3cbeb6ad8e89dae8c3 authored over 5 years ago by Ben J. Ward <[email protected]>
Add datastore loading documentation

4db138f5e0b0560286b7fb391a0d689ed0bef843 authored over 5 years ago by Ben J. Ward <[email protected]>
Add datastore construction documentation

ae781319cfadf8956fed97c177cce81be8e23577 authored over 5 years ago by Ben J. Ward <[email protected]>
Add read tag accessor for LinkedReads

a8a1461e3c570bcd2de6356e0ea5e1a2b5de71a4 authored over 5 years ago by Ben J. Ward <[email protected]>
Add logo for documentation

50b3374a5f950b48186bd4aa6102ed9eb38ba638 authored over 5 years ago by Ben J. Ward <[email protected]>
Linked read datastores (#7)

3e0f1d9df94a94d99b4a5bed0c05b948a291860f authored over 5 years ago by Ben J. Ward <[email protected]>
Update the readme

e894fea943f0b9a10e34cf5e6fb8e74f3a95cbfe authored over 5 years ago by Ben J. Ward <[email protected]>
Get long reads working with sequence buffer (#6)

* Get long reads working with sequence buffer

* Bump test coverage

* Even more test coverage

d7c8bf402d6ec2d0f6c9942dce509339e1b4875c authored over 5 years ago by Ben J. Ward <[email protected]>
Remove the prds

8c580dc2fabd45a424d409f55a0957019b9bf6a9 authored over 5 years ago by Ben J. Ward <[email protected]>
Unify the datastore types under an abstract type (#4)

2e7e4fc98019ba76ef16f6121bf0348b36922973 authored over 5 years ago by Ben J. Ward <[email protected]>
First draft of the SequenceBuffer (#3)

* Add a first draft of buffer for quicker iteration and sequential access

* Add a test for re...

7d9991e3aec5edb71a1d36a9d8d10b4c2a90be69 authored over 5 years ago by Ben J. Ward <[email protected]>
Long read datastrore (#2)

Add basic functionality for building, loading, and retrieving sequences from
a datastore of lon...

1d3dfd91b50bbfee0f25b1243a834f7f222c6d97 authored over 5 years ago by Ben J. Ward <[email protected]>
Add ci prep to travis

55b4be8aa0d3893daf9b6236f601e94064cb2e94 authored over 5 years ago by Ben J. Ward <[email protected]>
Add first working PairedReadDatastore

d30cfb7ff011b02c2099039bdf94c6c9da09b9c9 authored over 5 years ago by Ben J. Ward <[email protected]>
Initial commit

12bbed91539dabab7426f2c5ec1ad841a4abdc60 authored over 5 years ago by Ben J. Ward <[email protected]>