github.com/BioJulia/BioFmtSpecimens commits | Ecosyste.ms: OpenCollective

Merge pull request #29 from jgreener64/mmtf

MMTF file examples

a88ddc9ceca014f47716406f0ede706a70bbbe49 authored about 5 years ago

MMTF file examples

1fd9519b4be8d93d688c49ea39ba020d6589c674 authored about 5 years ago

Merge pull request #28 from tanhevg/bugfix/BioStructures#11

Remove the error that is no longer an error; replace with a real file from SCOPe

1babfbc48ae33f98f12d8d5e6c932e63dc8c8dd3 authored almost 6 years ago

Add a specimen from ASTRAL SCOP95

9055c69f577d6b73299457e6a713331a2088f5e8 authored almost 6 years ago

Merge pull request #27 from dcjones/master

Add ERCC92.gff3 example

24975677f191d6ca2f1739efcbfea4f1c56b67b5 authored over 6 years ago

Add ERCC92.gff3 example.

a55767b4caae529688ad2d6c75ca933fed32827f authored over 6 years ago

Merge pull request #26 from BioJulia/long-cigars

Long CIGAR BAM and SAM

bac4e896b6ccd6faf31a079487fd795929d22fb4 authored over 6 years ago

add file with records containing >65535 cigar operations

55da239a18292a433e49d301d25468d4b4f3bdec authored over 6 years ago

add bam files containing records with >65535 cigar operations

a64b7eabb83043d6edc49f6a356f609e1abbcc79 authored over 6 years ago

Merge pull request #23 from jgreener64/mmcif

Some mmCIF files (protein structures)

297ad58ff32082de92ab8a83d97c3a805435a3c1 authored almost 7 years ago

Some invalid mmCIF files

f2d050b5acf6e1819eccbe99565a0f92de1eae97 authored almost 7 years ago

index.yml file for mmCIF

a458eb4b73b8876adef9af356be7ac9ea29f4ff4 authored almost 7 years ago

Some mmCIF files (protein structures)

e74e4d7be655cad448877d8404b62a515b27b714 authored almost 7 years ago

add block compressed BED and GFF3 files (#22)

* add GFF3/TAIR10.part.gff.bgz

* add BED/ws245Genes.WBGene.bed.bgz

222f58c8ef3e3480f26515d99d3784b8cfcca046 authored over 7 years ago

add BBI (bigWig and bigBed) files (#21)

3140ef6110bb309703ffde564ce705eeb80607d4 authored over 7 years ago

add linewrap tags in FASTQ (#20)

49311feb1e5a88af140fe76f3e4a268271a3b9cc authored almost 8 years ago

add BCF files (#19)

a197e8c493d1bed72652298086d080f2fdea8f16 authored almost 8 years ago

add some VCF (#18)

23d7ad05e965ecb60c7cdb856f738af3d23a2e26 authored almost 8 years ago

add a BAM file (#17)

https://github.com/BioJulia/Bio.jl/pull/360

0a7875f7781f629857260264e5e01119472946b4 authored about 8 years ago

Merge pull request #16 from marciogm/abi

Add ABI files

a97ebc555133cb6246620aed98ea1a0e8d3b6146 authored about 8 years ago

Add ABI files

1373d80bcaff6f02714d8d12c5338fb66cdc3f50 authored about 8 years ago

Mark two gff3 examples as invalid.

f828c4e70186899d265058995e2ab4de9bfdfbe0 authored over 8 years ago

Minor gff3 modifications.

a07a74f8a352b08fc513c792a2b25456d4122a2a authored over 8 years ago

Fix broken yaml.

8f424fe4719fd69d5a2c2b3d12b38b2ef3cdb709 authored over 8 years ago

Add GFF3 specimins.

5d7cbe7305247579ff4672de94e85d2344785b29 authored over 8 years ago

Merge pull request #10 from kescobo/blast_results

Add blast results xml

4ad75d5ac33dc61f10aaea25a3628cb7f31a7dce authored over 8 years ago

add BAM files (#15)

ed2c2d23c2d6fd85b55daa0d972e0055334120f8 authored over 8 years ago

add SAM files (#14)

fdb3ec2d866981de93c63b35720c696d9f55f0fc authored over 8 years ago

Merge pull request #13 from kdmurray91/lsm

Add labelled square matrix samples

df98979c3878c780d616ac09ebb207ad234cc4ee authored over 8 years ago

Add LSM index.yml

90389ebbdb7541c90ee85f30a55e9cb2ac6bdd25 authored over 8 years ago

Add substitution matrices per comments on #13

18c36b6a278cce174411b0f636fc0a5cc7401a83 authored over 8 years ago

Use same matrices as in unit tests

f5100ad207247561c528bf6250089e88bf7ea12c authored over 8 years ago

Add labelled square matrix samples

4a70eda2aaccc14a04fa5baea01cd38360391e33 authored over 8 years ago

add .2bit files (#12)

9939328c852ae04ef6f1f917c9868399b0467859 authored over 8 years ago

add blast results xml

c16c32c0815a3381804397e1a859d0f5497a75ea authored almost 9 years ago

Merge pull request #9 from kescobo/addblastdb

add prot and nucl blast database

da86996b545d33b532432dbc68d728644353ac11 authored almost 9 years ago

add prot and nucl blast database

f9c17f97feb9a12fca0f1044af4713cfa598ef8f authored almost 9 years ago

Merge pull request #8 from jgreener64/pdb

Some valid and invalid PDB files (protein structures)

ffb0cacde4c000f0abd6c9886616dc4381626bf6 authored almost 9 years ago

Some valid and invalid PDB files (protein structures)

fe6620b8633147f4f44db7b55ccc8e539169ee51 authored almost 9 years ago

Merge pull request #5 from bicycle1885/ambig-aa

add a protein sequence

8a5c698f9fa6fae0027da5f4c145d7fafb3c337f authored about 9 years ago

add a protein sequence

that contains ambiguous amino acids

c510b6c5186adcb15b8e466c14bc094938746259 authored about 9 years ago

Mark one BED specimen as invalid.

d8cb29531338f441c14b4f3e8b122888e07337b4 authored over 9 years ago

Some BED specimens from kent.

0dc6d35dc6aac0f098013d79753f4d03124104c9 authored over 9 years ago

Tag weird fastq examples.

eee67782fd97357c54b62b3fa43ded725eb699ac authored almost 10 years ago

FASTQ files from Biopython.

b2afd6823cc3f08160ee62b1facf52c563b975b0 authored over 10 years ago

Add a boolean valid field to the index so we can include negative examples.

72c6c04d64ecfa785f6bca00492f0a13c04a59e1 authored over 10 years ago

Fix a few filenames.

d8709bd8666aa41143a5b07618c7c99e8c953edd authored over 10 years ago

add Bioruby fasta files

7419ddf0e589dc7cd800325f6c4b6aca78be34ec authored over 10 years ago

Add FASTA specimens from Biopython and BioPerl.

e2e67761c8510a8d4d8d514ba783c34f93440ad7 authored over 10 years ago