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github.com/BioJulia/WaveletMatrices.jl

The Wavelet Matrix
https://github.com/BioJulia/WaveletMatrices.jl

Merge pull request #11 from BioJulia/net2dev

Update URLs from biojulia.net to biojulia.dev

ce126f4e8702dc4fcdf45470189d7c0b32ee57d0 authored over 1 year ago by Kevin Bonham <[email protected]>
Update URLs from biojulia.net to biojulia.dev

e9ff94dda73bdd67e76a140efac66ef2d3490e47 authored over 1 year ago by Kevin Bonham <[email protected]>
Fix deprecations (#6)

bd8e65a76a41d8343e437328308aa934ae190b45 authored about 5 years ago by femtocleaner[bot] <30578772+femtocleaner[bot]@users.noreply.github.com>
Add Project.toml and Manifest.toml (#8)

* Delete REQUIRE

* Add files via upload

* Update Project.toml

* Delete REQUIRE

* Add...

1ade0c9a4ab4f38ebde12a02cc388114beb2240d authored about 5 years ago by S R Gokul Krishnan <[email protected]>
do not import Base: select (#9)

`Base.select` does not exist, and an imported `select` is not used in the source code.

611e5db674b639cebc96de4a6e547bba65599b9a authored about 5 years ago by Jeffrey Sarnoff <[email protected]>
Typo (#4)

aeddb5d8d3c7ea77b3c2aabdb56f0a971c652ae2 authored about 5 years ago by Páll Haraldsson <[email protected]>
Update for Julia 1.0 (#5)

- Substitute FactCheck for base Test

- Fix deprecated vector allocation

- Fix deprecated v...

11085b395c3a698cee350ec063023033ae51ebe9 authored almost 6 years ago by Tim Sterne-Weiler <[email protected]>
Fix deprecations (#3)

36d6df3a9ca71a41e66bd7b5b7a6d3848c6da747 authored over 6 years ago by femtocleaner[bot] <femtocleaner[bot]@users.noreply.github.com>
Contributing files rollout (#2)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

04fe236a266b38c2d59efaab7c464c82985a574a authored over 6 years ago by Ben J. Ward <[email protected]>
Merge pull request #1 from timbitz/master

Julia v0.6 Compatibility

f0500e5a71707a090f57c8027b3c0d3d304eae7e authored over 7 years ago by Ben J. Ward <[email protected]>
update travis to 0.6, remove nightly

437c127a009354838d6e1b75db335191b0b25eb4 authored over 7 years ago by Tim Sterne-Weiler <[email protected]>
fixed deprecated call interface with v0.6 constructor syntax

f6e0501f6735850cc65acbb17d1edd8a0565b615 authored over 7 years ago by Tim Sterne-Weiler <[email protected]>
attempt to fix TypeError: apply_type: in Vararg count

618fdb67a580782d081c0e271cd82596167497f3 authored over 7 years ago by Tim Sterne-Weiler <[email protected]>
deprecated Base.call syntax

0a97a134bba8c7e5fbf3e96bdadc1278636a4098 authored over 7 years ago by Tim Sterne-Weiler <[email protected]>
invalid subtyping

b063aa991d8d39177fd4c754ced09c30ce2738eb authored over 7 years ago by Tim Sterne-Weiler <[email protected]>
inner constructor where syntax

68fefcfd29029ec2e48aea9c619380b51c99e802 authored over 7 years ago by Tim Sterne-Weiler <[email protected]>
added where syntax

22661158ad58bf6c9412a14acbfade1c61dc930d authored over 7 years ago by Tim Sterne-Weiler <[email protected]>
fix immutable to struct

663dba64f844f926acbcff347d901d6d51ed8fa9 authored over 7 years ago by Tim Sterne-Weiler <[email protected]>
julia v0.6 in REQUIRE

1efe9cb1c5aa2fc261af9b40d3390c239ddb6cb2 authored over 7 years ago by Tim Sterne-Weiler <[email protected]>
types to struct

3b0b45a9e363d9fbd6a9c8ba9e6f72b01eefb6e4 authored over 7 years ago by Tim Sterne-Weiler <[email protected]>
use accrank1 of SucVector

6005630e16cefb365d6530d062c8abfe6ef0b4db authored about 9 years ago by Kenta Sato <[email protected]>
minor performance improvement of getindex

791d8985226cc41285a66ace8c38d455b73f2d22 authored about 9 years ago by Kenta Sato <[email protected]>
fix a deprecated type name

947c8ff67bc572b9545f4565a1979be359b59fda authored about 9 years ago by Kenta Sato <[email protected]>
update .travis.yml and README.md

ed62a02f0d5b2fc8eaed23b93af9535bc6324ba9 authored over 9 years ago by Kenta Sato <[email protected]>
use clamp

58162f9ab5719e38978cf61740d63f4d4c11354d authored over 9 years ago by Kenta Sato <[email protected]>
extend rank indexing

this will simplify many programs

1aaea5dab1fc63c16a14c25d92fac91588aaf34b authored over 9 years ago by Kenta Sato <[email protected]>
update README.md [skip ci]

f4a85f173ef45a87580a44c61d84b9369320a845 authored over 9 years ago by Kenta Sato (佐藤 建太) <[email protected]>
remove Requirements section in README [skip ci]

c3903645b687203c55194462338a2c4e19bf6bb5 authored over 9 years ago by Kenta Sato <[email protected]>
do not run tests on release for now

e2be1cca2175c450e5a1c4e93c02fac8f7d259fb authored over 9 years ago by Kenta Sato (佐藤 建太) <[email protected]>
update the build status badge

ffe9bc30716b579d288bb807c1f6d8b8ee23daf0 authored over 9 years ago by Kenta Sato (佐藤 建太) <[email protected]>
add requirements

2c9440ab6f379882997b960ed8ff0f723d735074 authored over 9 years ago by Kenta Sato <[email protected]>
add test/REQUIRE

8a769ed0c9143403d6db95373a1bb5ad3e6f8cec authored over 9 years ago by Kenta Sato <[email protected]>
add help (and rename variables)

f5e5082dacc7392e1eda11ae51048340be42365c authored over 9 years ago by Kenta Sato <[email protected]>
add __precompile__

0fae019a216595be8d2ae2533c646258ede51d03 authored over 9 years ago by Kenta Sato <[email protected]>
add destructive option

8ad3eb08482a71e4bd6f77199ebb57730b9c37f8 authored over 9 years ago by Kenta Sato <[email protected]>
unify constructors

bec10db5623e7a3339b6d3ab6c3cd16da7fa870d authored over 9 years ago by Kenta Sato <[email protected]>
more efficient construction

6a17ffda4bc7f7a65d16019f1a72b5a6e5907373 authored over 9 years ago by Kenta Sato <[email protected]>
a few touch-ups

8f97fccaf053c7071af3f9410341b8d2f482024c authored over 9 years ago by Kenta Sato <[email protected]>
add IntArrays.jl requirement to README

1c8409dbf31f5e572a8ac90b6c1337dc65e737ac authored over 9 years ago by Kenta Sato <[email protected]>
use IntVector for space-efficient construction

bb596975aa6acb17f51f2f2034c7e3b1ee053e06 authored over 9 years ago by Kenta Sato <[email protected]>
tidy up constructors

ed2c7b16590e7bece666a94994474360fa833f89 authored over 9 years ago by Kenta Sato <[email protected]>
fix sizeof

98a127733accab41e5c29a486571f7fb778185b8 authored over 9 years ago by Kenta Sato <[email protected]>
add lookup table for sp

cf0cb8f538da7c93f1fbe95c7508bbe1044ca8f2 authored over 9 years ago by Kenta Sato <[email protected]>
reduce the number of rank ops for select

1a00932beb84713176a76afb76ba3dcbbba5aae6 authored over 9 years ago by Kenta Sato <[email protected]>
update README

018e6a0001f83c8d18038bcd3217b72487d2d68d authored over 9 years ago by Kenta Sato <[email protected]>
implement select

9f493f18fdb3d417b03ad434fca98929760fe4b4 authored over 9 years ago by Kenta Sato <[email protected]>
add REQUIRE

347a635bafef3aa45b99b554df62bbe189ac123b authored over 9 years ago by Kenta Sato <[email protected]>
convert the type of index

353138082c2ecc3fa3d6a0a307dfdc546ced85ce authored over 9 years ago by Kenta Sato <[email protected]>
add @inline to getindex

7228dd777dccb262aecdba9be475f2543bb5ca38 authored over 9 years ago by Kenta Sato <[email protected]>
use early return for performance of getindex

d0c1b784374d69a046ef8f0d487350d6057e41de authored over 9 years ago by Kenta Sato <[email protected]>
preserve element type

e4c9626e620f10d4d484e09b4bbb99f269f3d340 authored over 9 years ago by Kenta Sato <[email protected]>
remove the `len` field

55ff1e1126657ac589aa5af03964479ecdcba58f authored over 9 years ago by Kenta Sato <[email protected]>
type-stable constructor

319cb65ca265b5599b939af23ae5011150a9a37b authored over 9 years ago by Kenta Sato <[email protected]>
remove an unnecessary constructor

f5c2623e03415f8aa2cbdf594e99e369a637ac3b authored over 9 years ago by Kenta Sato <[email protected]>
use new syntax of FactCheck.jl

901b4b6f06e527acb81a4b59c61a0ad1932c9a97 authored over 9 years ago by Kenta Sato <[email protected]>
add freq function

61b2832ddeb70ff99710ccea0528dc921093ad24 authored over 9 years ago by Kenta Sato <[email protected]>
remove Char functions

b8c04ebe4be6adb080681d3f69dc12472344adc7 authored over 9 years ago by Kenta Sato <[email protected]>
check bounds

2543271ed5ced1e0628fbd16c7cb3d3954e57651 authored over 9 years ago by Kenta Sato <[email protected]>
fix type

74f448cf89ef309b1fbd1535177df868089c5d65 authored over 9 years ago by Kenta Sato <[email protected]>
add getindex

0da1746fa5148ad4cac41d4575cb918daf658885 authored over 9 years ago by Kenta Sato <[email protected]>
support v0.4

56c57b7ace75ffc109485b62e920fec933949687 authored over 9 years ago by Kenta Sato <[email protected]>
use NTuple for bit vectors

00aad35129123a10ee13aa779cf84c57fd498f4a authored over 9 years ago by Kenta Sato <[email protected]>
add sizeof(WaveletMatrix)

cefd7825065aae977e31a76000dcb42f010d24f5 authored over 9 years ago by Kenta Sato <[email protected]>
add Vector{Uint64} test

fa72104abca3b669bca7d9e5125221148da61272 authored over 9 years ago by Kenta Sato <[email protected]>
implement N-bit encoding

8ee390d906797f217c59e567a7700d27b58c543c authored over 9 years ago by Kenta Sato <[email protected]>
digitseps

e2aca9f21c7a287f59fb58085d12382396412c9b authored over 9 years ago by Kenta Sato <[email protected]>
print text length and uppercase

8da1669abcffeddbc78207bb654f62ee59759dc4 authored over 9 years ago by Kenta Sato <[email protected]>
remove newlines

a845233c80c78e29ad243332e954971ddf2875b4 authored over 9 years ago by Kenta Sato <[email protected]>
fix a link

d2354923d9040eeb787ebaf241f4b09336589018 authored over 9 years ago by Kenta Sato <[email protected]>
add README and small fixes

85805ebe1897521bb8bd7cafeeb06d01eff0d5c5 authored over 9 years ago by Kenta Sato <[email protected]>
add FM-index demo

80540027131e396fc957deead2407804834680cd authored over 9 years ago by Kenta Sato <[email protected]>
store length

363748caeb2635243bbcf7f487b9a4bf9319d8c3 authored over 9 years ago by Kenta Sato <[email protected]>
add constructor and rank

ada210299ed231ae787c705092bf5f2ca02e6779 authored over 9 years ago by Kenta Sato <[email protected]>
WaveletMatrices.jl generated files.

license: MIT
authors: Kenta Sato
years: 2015
user: bicycle1885

Julia V...

1967a738abb8a47b5a7d9e6f121df98845f71fa4 authored over 9 years ago by Kenta Sato <[email protected]>
initial empty commit

35b78451f47751c72a1ae44eb0295fd2aedf43a1 authored over 9 years ago by Kenta Sato <[email protected]>