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github.com/BioJulia/FMIndexes.jl

FM-index for full-text search
https://github.com/BioJulia/FMIndexes.jl

Add CI (#14)

908e0fe022d4b04f4d4f06f89c2ae58a0dcc4ced authored almost 3 years ago by Jakob Nybo Nissen <[email protected]>
Fix constructor for String (#12)

5fe3d617222dcdcb463e5f6b89369159b2774a7f authored almost 3 years ago by Jakob Nybo Nissen <[email protected]>
Support for Julia 1.0+ (#9)

Thanks for taking the time to do this @gmassman @timbitz, thanks for conducting a review @kescobo!

3f2e3e7c494dc1c43e4d02cc1d826660dc2bf3c7 authored almost 5 years ago by Garrett Massman <[email protected]>
Contributing files rollout (#7)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

844de5afdd428ea3aa21c2e3b1e08aa1616d310c authored over 6 years ago by Ben J. Ward <[email protected]>
fix README.md (#6)

4dc7556d45ef8f07d619decb9a1c4c70b91bb3ce authored about 7 years ago by Kenta Sato (佐藤 建太) <[email protected]>
do not import methods from base (#5)

This is mainly for readability. Directly extending methods looks a little bit verbose but checki...

8a3a245b0227f5a66b81a5a6f3f6b5c8d26828cd authored about 7 years ago by Kenta Sato (佐藤 建太) <[email protected]>
replace FactCheck with Base.Test (#4)

8b31584a553f48701dec96f9ce631f5e9da533a1 authored about 7 years ago by Kenta Sato (佐藤 建太) <[email protected]>
Staticfloat updated ci url (#3)

* Update CI URLs to point to new caching infrastructure

* update versions

ed0292074a81990e89881b49125dfe471e66424a authored about 7 years ago by Kenta Sato (佐藤 建太) <[email protected]>
Julia v0.6 Compatibility (#2)

* ACSIIString to String

* update runtests.jl: swap str.data access for Vector{UInt8}(str)

...

8e72dae0c793d75e42e93b390cd82a0951b3c1f0 authored about 7 years ago by Tim Sterne-Weiler <[email protected]>
drop the support of v0.4-

69aab79d52840d8ce1c396dd90985d3eb6bca5ae authored almost 9 years ago by Kenta Sato <[email protected]>
fix __precompile__()

97788fd027ef5049af52b47637f08d950ff5aecb authored almost 9 years ago by Kenta Sato <[email protected]>
support arbitrary byte-convertible sequences

677e20e7c66b7bf3a189e85cae0d2eb4dff01c5f authored almost 9 years ago by Kenta Sato <[email protected]>
show approximate data size

c419ea6ec56f7e6cc758adbf9364317eb9453d9c authored almost 9 years ago by Kenta Sato <[email protected]>
more inbounds

c775e3dc822f0e54be37a7fbf2138030128142d8 authored almost 9 years ago by Kenta Sato <[email protected]>
add a method that narrows down an SA range by char

03324aa434f93058b73d7577f6dcdd874e770ad1 authored almost 9 years ago by Kenta Sato <[email protected]>
rename the package name to FMIndexes.jl

just because many papers use that name

ea497eae30e9f94ff61a6b16edbfc4f67aa9fbe8 authored about 9 years ago by Kenta Sato <[email protected]>
update README.md

8ee19957b90b1198f33f1460f2b8b6a249703b4a authored about 9 years ago by Kenta Sato <[email protected]>
add more tests and clean up

bb0ba4859ffc23aa1539ccc771074efc601ba870 authored about 9 years ago by Kenta Sato <[email protected]>
test on v0.4 and nightly

974984ddf5d8b5be7cd5fb50823aaf50cc78dd95 authored about 9 years ago by Kenta Sato <[email protected]>
update docs

afef939362307007db5a91786787f22c6380a7d7 authored about 9 years ago by Kenta Sato <[email protected]>
fix the badge link

6e61a2f65a72de80a735f344f05797c3b50cbf44 authored about 9 years ago by Kenta Sato <[email protected]>
clean up code about pSAscan

1e971d12710a110d322ff70744141ba62c84ee5c authored about 9 years ago by Kenta Sato <[email protected]>
accept sequences of length 1

67c17237ef56fdd50f16b72c1e1b29559b261a2a authored about 9 years ago by Kenta Sato <[email protected]>
fix a bug

4f59db25ca19fd403295559efd28dba58fbc1f03 authored about 9 years ago by Kenta Sato <[email protected]>
do not kick off Travis CI on release for a while

1e8129872a286b408adf09a71ff5618f2f2596cf authored about 9 years ago by Kenta Sato <[email protected]>
fix the repository name in README

ffab88cfdf5c12af47e5241a3b97ff00747451b7 authored about 9 years ago by Kenta Sato <[email protected]>
support mmap-backed array for temporary suffix array

0c1693839aa3554780dada42fd9d223bffac8794 authored about 9 years ago by Kenta Sato <[email protected]>
add REQUIRE

ae32894733cb2689a819aa69b8809352a289cbeb authored about 9 years ago by Kenta Sato <[email protected]>
support pSAscan for suffix array construction

download and install pSAscan from:
https://www.cs.helsinki.fi/group/pads/pSAscan.html

3d94b4ed297c3f2861fbd91767ab083e106ee19c authored about 9 years ago by Kenta Sato <[email protected]>
Oh, forgot to add text

297962a5c5b08e3310c6d3130248992d70ecdea6 authored about 9 years ago by Kenta Sato <[email protected]>
add some tests

bcb1c5d5c4fa59a00f393c46ff6e03c3e8f1d8de authored about 9 years ago by Kenta Sato <[email protected]>
use an anonymous mmap for long sequence

c41f93924bfb7f606231b370acf7ae960e78ba75 authored about 9 years ago by Kenta Sato <[email protected]>
rename type parameter `n` to `w`

292d349fb052a5abd81f09c8acfa59d3ad5ef48c authored about 9 years ago by Kenta Sato <[email protected]>
add tests for full-text search

890197ff8564d6f6091497ee4d78697f13ddeb45 authored about 9 years ago by Kenta Sato <[email protected]>
`sa_range` accepts an initial range

7d178eda0f7ad17a732e0bc69379c66421b0778d authored about 9 years ago by Kenta Sato <[email protected]>
add __precompile__

f1733406ec4fa5d29938aa896b04ae7c1eeede6e authored about 9 years ago by Kenta Sato <[email protected]>
add document

16adc9d23137e5b958ae869431541c45dd3b4727 authored about 9 years ago by Kenta Sato <[email protected]>
fix type params

49d4d7aa2b96a7fa33db2551182bbf9c4bbd080c authored about 9 years ago by Kenta Sato <[email protected]>
touch-ups

27ef93a42edcd76cefb26305188555fa87919b61 authored about 9 years ago by Kenta Sato <[email protected]>
add content

9c159de7b9b1060bc0550ec139c304bb2627e120 authored about 9 years ago by Kenta Sato <[email protected]>
FMIndex.jl generated files.

license: MIT
authors: Kenta Sato
years: 2015
user: bicycle1885

Julia V...

eb088eab765867509abad422c199676f908a633e authored about 9 years ago by Kenta Sato <[email protected]>
initial empty commit

81588094568522ff6d7d835bece91e409032d5bf authored about 9 years ago by Kenta Sato <[email protected]>