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github.com/BioJulia/KmerAnalysis.jl

K-mer counting algorithms and count-data utilities for the BioJulia framework
https://github.com/BioJulia/KmerAnalysis.jl

Merge pull request #7 from BioJulia/net2dev

Update URLs from biojulia.net to biojulia.dev

2a793151814a7fa7fe28524b8bf98378c807c248 authored over 1 year ago by Kevin Bonham <[email protected]>
Update URLs from biojulia.net to biojulia.dev

5f0c5988bf58a5787ab5a4990feb11dc44ebca39 authored over 1 year ago by Kevin Bonham <[email protected]>
Merge remote-tracking branch 'origin/master'

b9574c5d5fb262fde628b6fe2e33025f9698bb82 authored over 4 years ago by Ben J. Ward <[email protected]>
Add functions for computing KCI

bfb9991307a7dad434b7f71ec481d769a6bdeee1 authored over 4 years ago by Ben J. Ward <[email protected]>
Allow construction of 1D frequency spectra just from unsigned ints

12cdf51f3a57a93e3b800300e6b82001bcb75e02 authored over 4 years ago by Ben J. Ward <[email protected]>
Allow any iterable of LongSequence for constructing IndexedCounts

05046d327511b56c2083dc61f4e7996f65f4e738 authored over 4 years ago by Ben J. Ward <[email protected]>
Update CompatHelper.yml

5f54261548e3fc608d6f08585ce764f84d2d4893 authored over 4 years ago by Ben J. Ward <[email protected]>
Update CompatHelper.yml

df6037acc4bb3dd164c186895674bb3ca555f471 authored over 4 years ago by Ben J. Ward <[email protected]>
Update CompatHelper.yml

95ba40d80ab5327dae336499d09cefe378ff5030 authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

f8c6157c7fc16b759a261c9fd0208193465ae5f4 authored over 4 years ago by Ben J. Ward <[email protected]>
Fixup 2D kmer spectra construction

becd400ae44325afc6085c8826e12431c86b7805 authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

2b22af6f088ec86a6d67297da43307de94bc2593 authored over 4 years ago by Ben J. Ward <[email protected]>
Fixup bounds checking

1da8271996ae1283c4e23d6b74df8d261c74c0aa authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

b5faab270ad6757e6097235876fbd9901e154732 authored over 4 years ago by Ben J. Ward <[email protected]>
Update KmerFrequencySpectra.jl

ff33ca3deb99ed622cc71768bb23291e0a1b7300 authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

d0c241297d4345d9688c6696c1eb556b2286b419 authored over 4 years ago by Ben J. Ward <[email protected]>
Fix bug in 1D spectra building

63c01d14eb3bf767e9e0e23163974985873a723d authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

3ccf4d2cbec1400df1c31e2e527b1ea86bdf0890 authored over 4 years ago by Ben J. Ward <[email protected]>
Merge branch 'master' of github.com:BioJulia/KmerAnalysis.jl

c624a4fb099e12b87788f8493ea9bf9e40c07cbb authored over 4 years ago by Ben J. Ward <[email protected]>
Fixup 1D spectra constructor

415952ee3f0d848a05922c2dae3bfab3d9eea935 authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

4a91fc8dd1c28216b3d37b2f8bfef5b925b23ee6 authored over 4 years ago by Ben J. Ward <[email protected]>
Benjward/backwards compat (#5)

* Update Project.toml

* Create UnitTesting.yml

* Delete .travis.yml

* Delete Project.to...

b3e4b588ca66dbe43aa01433a655b3876a8eb403 authored over 4 years ago by Ben J. Ward <[email protected]>
Merge remote-tracking branch 'origin/master'

f59c1afa511390e2a2bb71c5cb4e66d83c4264bb authored over 4 years ago by Ben J. Ward <[email protected]>
Update ReadDatastores version used

7767fce3a231008509c2fa47728d3f9cb6a6b5a5 authored over 4 years ago by Ben J. Ward <[email protected]>
CompatHelper: bump compat for "ReadDatastores" to "0.4" (#4)

6995f25913db8424f3f47dfaeb2a1821736a7ed7 authored over 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Update CompatHelper.yml

5839e1b8b5059970c6d3080f9cba1e3cf73fe484 authored over 4 years ago by Ben J. Ward <[email protected]>
Fixup README.md

f5ad9de4ecab044f863d17d8a2b95295046e5fa3 authored over 4 years ago by Ben J. Ward <[email protected]>
Fixup tagbot

2199c115ce7419701e9c80d20ac3fc967dc7ea44 authored over 4 years ago by Ben J. Ward <[email protected]>
Finalise very first version

05ba76b9621714a3202849fa6f59f507619be57f authored over 4 years ago by Ben J. Ward <[email protected]>
Update kmer counter API, add spectra peak finding, and count projection

ccd1b4720f65138d545f8e5816dd260466ccb449 authored over 4 years ago by Ben J. Ward <[email protected]>
Implement support for Makie surface like plots for for 2D spectra

a301c4d08fab943263bc345d5f6667532ee4630e authored over 4 years ago by Ben J. Ward <[email protected]>
CompatHelper: add new compat entry for "AbstractPlotting" at version "0.10" (#3)

* Add point based plotting type recipe for 1D kmer spectra

* CompatHelper: add new compat ent...

111df52de01fb529d0d32e1408e5997e72c646f4 authored over 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Add point based plotting type recipe for 1D kmer spectra

198905625b305d0638cbad7405b7982d8c00eba6 authored over 4 years ago by Ben J. Ward <[email protected]>
Change package name

7bc0646edc3d1ced7591467a4b581d9b85bb95f5 authored over 4 years ago by Ben J. Ward <[email protected]>
More Documentation

5399844b8643a848473712915d14fdc4129fab4f authored over 4 years ago by Ben J. Ward <[email protected]>
Add initial draft of dist_mem (#2)

27fb7da0370b352dfafc081f8f3dedac2f64bded authored over 4 years ago by Ben J. Ward <[email protected]>
Fixup MinimizerTable

378b5c23878cbef7d8e4117a04ad3520a58596cd authored over 4 years ago by Ben J. Ward <[email protected]>
Merge pull request #1 from BioJulia/compathelper/new_version/2020-04-16-17-05-18-196-1011816935

CompatHelper: bump compat for "ReadDatastores" to "0.3"

ae9608f64019f24029dc740d7fe6a2cd0f19f00c authored over 4 years ago by Ben J. Ward <[email protected]>
CompatHelper: bump compat for "ReadDatastores" to "0.3"

b7e9613d6c0a984bb86d1c08ea7faea7c2b6ebb7 authored over 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Add draft multi-process minimizer table builder

d1fc931abd46cc79561cbd7a8ebc266928cd4fc2 authored over 4 years ago by Ben J. Ward <[email protected]>
Add docs

f44a21e85cbabc4d8e0e1f9823e72e4ddb1964e3 authored over 4 years ago by Ben J. Ward <[email protected]>
Add BioSequences dependency

046746c52c9587ee3cc2a61c53a142c85ebb6990 authored over 4 years ago by Ben J. Ward <[email protected]>
Add BioJuliaRegistry to CI

39ef18173885c7748876fdca5c1bac98f2a85da5 authored over 4 years ago by Ben J. Ward <[email protected]>
Add workflow files and travis

c8bdf18ea19ef855259291c4b74ef53def539566 authored over 4 years ago by Ben J. Ward <[email protected]>
Add .github files

5bfe3c031c9f8fea2308f6bad6e22f0d1755f445 authored over 4 years ago by Ben J. Ward <[email protected]>
Add single thread ram destroyer

272b29a7112d9a9fa7adda3255e1033a8b07b89c authored over 4 years ago by Ben J. Ward <[email protected]>
Add MinimizerTable

Make minimizer table construction slightly nicer

23e74a798f58228a9b2aa27e78d2081e237d74ec authored over 4 years ago by Ben J. Ward <[email protected]>
Add the simple MerCount struct

8e98ed3e979f13f5e28c8cd58c4f3bff81436cc8 authored almost 5 years ago by Ben J. Ward <[email protected]>
Add IndexedCounts

94dd35af3f7828d2d98ea8d1aace41897e1577f0 authored almost 5 years ago by Ben J. Ward <[email protected]>
Add sticker

d0e09eb01af55e61cae7de3cb5e71de229f62cbc authored almost 5 years ago by Ben J. Ward <[email protected]>
Add .gitignore and README

dc63574ecd01a898a8eba8de32010b0c3b1f0129 authored almost 5 years ago by Ben J. Ward <[email protected]>
Add Project file and src file

877c86cada2412dc96e0a254abc1fdc910ce0d77 authored almost 5 years ago by Ben J. Ward <[email protected]>
Initial commit

f064a361561724ab7bf3fe30be6c14df5d8aaee3 authored almost 5 years ago by Ben J. Ward <[email protected]>