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github.com/BioJulia/SingleCellProjections.jl

Analysis of Single Cell Expression data in Julia
https://github.com/BioJulia/SingleCellProjections.jl

Lazy dep on Muon.jl for loading h5ad files

rasmushenningsson opened this pull request about 2 months ago

1 warning in loading data and 1 error in cell annotation

pywugate opened this issue 4 months ago

Read error on TabulaSapients 10X data

rasmushenningsson opened this issue 4 months ago

Flat file -> DataMatrix?

kescobo opened this issue 5 months ago

Breaking changes for 0.4 - simplified IDs, support for external annotations and SCTransform update

rasmushenningsson opened this pull request 6 months ago

CompatHelper: bump compat for SCTransform to 0.2, (keep existing compat)

github-actions[bot] opened this pull request 6 months ago

CompatHelper: add new compat entry for TSne in [weakdeps] at version 1, (keep existing compat)

github-actions[bot] opened this pull request 7 months ago

CompatHelper: add new compat entry for PrincipalMomentAnalysis in [weakdeps] at version 0.2, (keep existing compat)

github-actions[bot] opened this pull request 7 months ago

CompatHelper: add new compat entry for UMAP in [weakdeps] at version 0.1, (keep existing compat)

github-actions[bot] opened this pull request 7 months ago

Local Outlier Factor

rasmushenningsson opened this pull request about 1 year ago

Reason behind not using Muon/AnnData

aadimator opened this issue about 1 year ago

MethodError: no method matching

akhst7 opened this issue about 1 year ago

CompatHelper: add new compat entry for Statistics at version 1, (keep existing compat)

github-actions[bot] opened this pull request about 1 year ago

Fix typo in tutorial.md

M-PERSIC opened this pull request about 1 year ago

CompatHelper: bump compat for HDF5 to 0.17, (keep existing compat)

github-actions[bot] opened this pull request over 1 year ago

Package extensions

rasmushenningsson opened this pull request over 1 year ago

Updates for Transfer to BioJulia

kescobo opened this pull request over 1 year ago

Add to BioJulia or BioJuliaDocs?

kescobo opened this issue over 1 year ago

Float32 support

rasmushenningsson opened this pull request over 1 year ago

`method=:nb` does not work for sctransform

pmodv opened this issue over 1 year ago

Mann-Whitney U test (Wilcoxon rank-sum test)

rasmushenningsson opened this pull request over 1 year ago

Migrate from SnoopPrecompile to PrecompileTools

timholy opened this pull request over 1 year ago

Dummy issue to upload plots

rasmushenningsson opened this issue over 1 year ago

TagBot trigger issue

JuliaTagBot opened this issue almost 2 years ago