Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/BioJulia/SingleCellProjections.jl

Analysis of Single Cell Expression data in Julia
https://github.com/BioJulia/SingleCellProjections.jl

unit testing: project from

160b174867add34d9a118b4e8312dbecb023076f authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Split basic tests into multiple files

27bafa33211df7d2d1f4eeb4e1aa71fb98d4b554 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
More DataMatrix unit tests

2114327e12052f866b27d34d6c38cdafb396dc73 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Test show

a4320fe30b32bbe04d42ff2bc4e03369ff85d7a3 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Dependency cleanup

Most of the removed dependencies are however still indirect
dependencies.

ff78f42c31704344d973c9036531b57c64918084 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Patch bump

f34ae470b331d0aa11e8fdbab5901947eaf2fa45 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
More precompile

b86082a14bf2cea581a48a9cdbc061a801098249 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
stabilize svd sign

e93ee554ba68cc9f8b4e2d06ab70b31650f5fbeb authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Test filter_ projections

384ad04e5143335bd7e763abbbedc5ac123f82bb authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Unit test projections

19b14d6de959f751c2243addecf5252aa5412a7f authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Unit test var_counts_fraction!

92851a261e3f17ca688866cc9a1d36861f5b0ddd authored almost 2 years ago by Rasmus Henningsson <[email protected]>
var_counts_fraction! fixes

Fix `check` kwarg bug.
Fix doc typos.

dcd0763f07beb3a7808ee94f1e725a521cb3b516 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Unit test filter_ functions

d2b1d25805412ffb1764ecf167c3230026ecbfdf authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Add codecov badge

1f6e4fe1e0b811a2078f438f99f9a5d39817b662 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
UMAP/t-SNE unit testing

954311bb262eed89157e19da7abc72a7f06e55bc authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Unit test force layout

63594530665e14cdee2d83c1b28c88b9b1ebddfb authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Improve SVD unit test

b2976cf832d8aafbd966730212dd99e1fec909ba authored almost 2 years ago by Rasmus Henningsson <[email protected]>
SVD unit test

ad4e51cd3c05ed0675f0fc49090025943417b7e7 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Test normalization

d28665e12224f689e3f52fd0ce850bcf9de8308b authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Readd accidently removed tests

6b372f5322afaa2881627f6f9a81a3eb72277774 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Unit test sctransform and logtransform

97d50e5087f5cbb73efb97fe126c99cb8290f9aa authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Load counts unit tests. Fix lazy loading bug.

fd4adcda5dde7a4511056c930820a145dea47a9d authored almost 2 years ago by Rasmus Henningsson <[email protected]>
logtransform/tf_idf_transform output expressions

logtransform and tf_idf_transform now output matrix expressions, which
plays more nicely with no...

36b9fa7c756650e833de4c9ce79b0f10adf0075c authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Automate threading of sparse times dense

* Matrix Expressions should no longer contain ThreadedSparseMatrixCSC
* During chain evaluation,...

e9fc3fa9917b189fc01131719f9f2065683b5163 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Fix for tags

77a6f5a8990b8113ffebaee291c11c1b791c802d authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Patch bump

d022d12f0b3dbae80af6d97773dd4d1cf1a0dd32 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Update TagBot

bedcb017e3ff5ee03deff465fc6b105d1b51a0cd authored almost 2 years ago by Rasmus Henningsson <[email protected]>
covariate docstring, fix scparams doc links

864fe9c66e121889634509924663b6731b8d91a6 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Fix doc links to DataFrames.filter

0d182c8dd57a7a219506d362c259b7a5fbba77fa authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Remove Manifest

47a434caa84107fd0c35e08ad7f6fe47e0a08aa4 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Add dev docs badge

7f5c96821aa05b7e0a3f1d76b0cb8781c853d9b6 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Documenter.jl basic setup

f5fa43895deaca82f0cdd8a058204db20e60e6ea authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Add CI badge.

e61f554593507f009b413495b1d582048a35b6fa authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Add CI

900db5f305292dda6c59e8abd28af7944f8d723b authored almost 2 years ago by Rasmus Henningsson <[email protected]>
update_matrix docstring

94ddbe690c04160fcb58e87c92167e57f501ca75 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
logtransform docstring

2020048d114ed8df4427cf73c71907e8e8be9231 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
obs_coordinates and var_coordinates docstrings

36ae10b7697057d05cf9de918637aa663daaec0a authored almost 2 years ago by Rasmus Henningsson <[email protected]>
project docstrings

cabbf3f0c1817892784538cc893f56d88ec9e323 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Minor project fix

cd4b9fba86bfb247ed99618c92f9919cc2fcc5ac authored almost 2 years ago by Rasmus Henningsson <[email protected]>
t-SNE docstring

a77db28027feeef4eac77e6c273cdddbc2569251 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
umap docstring

905e48d71b2f665badc096a7b69bdcf0df0ae8b5 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
force_layout docstring

9d46653ce049cc3e2891ef526502c2e6c130ff6e authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Docstrings for filter_matrix, filter_var, filter_obs

9352da7aab2d33515e72b0310a7086702b75c92c authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Make filter_matrix param order more consistent with filter_var and filter_obs

db642434bf1edc2ed93fc42b0fe6ed4c5db9dd7d authored almost 2 years ago by Rasmus Henningsson <[email protected]>
DataMatrix docstring, change typeparam name Ts to To

d07983b6ded56c02c00c18ce52f046e94fbe1f26 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Fix typo

d69a43d8cef0f919697ff7e6df7ed34828955e8c authored almost 2 years ago by Rasmus Henningsson <[email protected]>
merge_counts docstring

ad2925370b273aca8143b44d711fb2b5869d8113 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
load_counts docstrings

33ddc2ba60b497ec0eb0e603ddfcac2475e13175 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
load10x docstring

e50b86e7a3053cdb65a568971493de96b6f2c1f6 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Simplify installation instructions

7785f65cb708681821e571c539908b423b642143 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Add SCTransform compat

ee341515a19fd070a1d8d57072aaaa92bde45792 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Compathelper permission fix

63a17124573d28bf6d8404cf6eb8561c2cb50c2e authored almost 2 years ago by Rasmus Henningsson <[email protected]>
More svd docs

60cf0f48426a8e533449b95ba51a211feb5b539b authored almost 2 years ago by Rasmus Henningsson <[email protected]>
svd and related docs

bd11054363bdfb2f9989ff00eb27e3dd0576a486 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
docstring for normalize_matrix and related exported functions

d4c567c63c5ba85f521c7a5dcb407b18fb6c0dd9 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Remove non-existing export

e6727c49e00524ebbb4763c06728499bf08aaa18 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Add missing compat

475ea44eddf35d785daedb7001f149accbde05d4 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Simplify sentence

a890689bb14b0b33b09f23d350fc7ee37c4506b3 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Describe ProjectionModels

7d8053e166bce3eec1df89c31e8c800e80b9ed93 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
README: Add Force Layout projection plot

401e5fe51ddba5add91b87ccc266cb4b511f14a1 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
README: projections

dd259820d1e772820403dd92b6f1ed411ac68d92 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Add SCTransform links

b2b861cdd4e960fbe40c5d3c5808d2046ba623c7 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Add d3-force ISC License reference for force layout code

00d9588151a45d060cb1d2ec9244061acfc7a220 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Add example plots

fa43dbe079d056afedce7f9f402bd34b098c2ef8 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Minor README improvements

8776f7ae0971759aadcb14579013b166e74f9833 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Example plotting updates

5634a255fb8ab534e7880638829bfcdc1334922e authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Fix typos

14fd7ab47d940212143630983f9e269ad573bad1 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Fix t-SNE glue code

e8eebf91d99d5874a414465d71b4962f92b9e589 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Add Example usage

51798bc3ad456a78cfe6c501e185cc9b6c0b7f3b authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Overview and installation instructions

fc598909f1f3de5930b7114682945b6b2bad5e16 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Add docstring examples

4f2ede278ad40da35085b6a2184480ce2bcaac24 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
SCTransform docs, export sctransform

0c0111779172e0ea1e1714ee3d4cb2482fb44742 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Move source code to here

d506aa22a1239422a04d00a7f02ffee9746dfc8d authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Pkgtemplates init

15a6a7274c10588236b2691307a9f5f689ba08e8 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Update README.md

a50188311a0850ea3761a3445fb539ba1ee445e2 authored almost 2 years ago by Rasmus Henningsson <[email protected]>
Initial commit

e9dddcfe515817f6009c7817c48cc1d9a2f680f1 authored almost 2 years ago by Rasmus Henningsson <[email protected]>