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github.com/BioJulia/Bio.jl

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
https://github.com/BioJulia/Bio.jl

I am trying to run 'using Biosequences' on Julia Version 1.4.1 on a Windows 10 PC.

ManaseeTW opened this issue over 4 years ago
I am trying the code 'using Biosequences'

ManaseeTW opened this issue over 4 years ago
when i try using bio julia i get this error message:

waweruk2001 opened this issue over 5 years ago
support Us to migrate from R lang (xcms) to Julia (BioJulia)

dorvan opened this issue almost 6 years ago
Publish a new release ?

jonathanBieler opened this issue almost 6 years ago
search function is undefined

229668880 opened this issue almost 6 years ago
Error loading Bio

JokingHero opened this issue over 6 years ago
Bio revamp

SabrinaJaye opened this pull request over 6 years ago
Contributing files rollout

SabrinaJaye opened this pull request over 6 years ago
Clarify status of project in readme

jgreener64 opened this pull request over 6 years ago
Bio.Align to read bam file Julia 0.6.2

rgate opened this issue almost 7 years ago
Activating Open Collective

monkeywithacupcake opened this pull request almost 7 years ago
Broken Contributing link

miguelraz opened this issue almost 7 years ago
Remove reader and remaining BioCore.jl files

SabrinaJaye opened this pull request about 7 years ago
Update the CI

SabrinaJaye opened this pull request over 7 years ago
Remove PDB update test that may fail

jgreener64 opened this pull request over 7 years ago
Decompose Bio.Structure

jgreener64 opened this pull request over 7 years ago
Indexed versions of {omega,phi,psi}angle

h3nnn4n opened this pull request over 7 years ago
[WIP] PDB file handling enhancements

joelselvaraj opened this pull request over 7 years ago
[WIP] Decompose Bio.Align and Bio.Intervals

SabrinaJaye opened this pull request over 7 years ago
Just a heads up...

sbromberger opened this issue over 7 years ago
Julia v0.6 compatability

CorySimon opened this issue over 7 years ago
Installing BioJulia using Docker

bicycle1885 opened this issue over 7 years ago
Installation of Bio.jl master branch; HttpParser fails

weinstockj opened this issue over 7 years ago
Pass the CI

SabrinaJaye opened this pull request over 7 years ago
CI failure

bicycle1885 opened this issue over 7 years ago
New data structure for biomolecular structures

bicycle1885 opened this issue over 7 years ago
Remove Iterators.jl dependency (not used)

iamed2 opened this pull request over 7 years ago
Decompose Var

SabrinaJaye opened this pull request over 7 years ago
findfirst and haskey for IntervalCollection

dcjones opened this pull request over 7 years ago
Discriminate between exact Interval matches and overlaps

phaverty opened this issue over 7 years ago
alternate name for `intersect` method?

phaverty opened this issue over 7 years ago
StringField broken on Julia 0.6

phaverty opened this issue over 7 years ago
Complete Bio.Seq decomposition

SabrinaJaye opened this pull request over 7 years ago
Test on Bio.Var

bicycle1885 opened this issue over 7 years ago
remove unused exported names

bicycle1885 opened this pull request over 7 years ago
fix importing in Bio.Var

bicycle1885 opened this pull request over 7 years ago
Checking whether or not an Interval overlaps with an Interval Collection

phbromley opened this issue over 7 years ago
check gap existence before making a kmer

bicycle1885 opened this pull request over 7 years ago
implement a faster and simpler eachkmer

bicycle1885 opened this pull request over 7 years ago
add isprimary for SAM.Record and BAM.Record

bicycle1885 opened this pull request over 7 years ago
Update CI URLs to point to new caching infrastructure

staticfloat opened this pull request over 7 years ago
add Interval(seqname, range) constructor

bicycle1885 opened this pull request over 7 years ago
add BigWig.values

bicycle1885 opened this pull request over 7 years ago
How to get kmer counts of a particular kmer?

CorySimon opened this issue over 7 years ago
add BigWig and BigBed modules

bicycle1885 opened this pull request over 7 years ago
Split Seq.Demultiplexer off to BioSeqDemuxers.jl

kdm9 opened this issue over 7 years ago
PDBx/mmCIF and PDBML/XML support.

bicycle1885 opened this issue over 7 years ago
Site counting framework completion

SabrinaJaye opened this pull request over 7 years ago
Make Bio.Intervals.Interval immutable.

bicycle1885 opened this issue over 7 years ago
Move organisation level issues

SabrinaJaye opened this issue over 7 years ago
Migrating to modular software organization

SabrinaJaye opened this issue almost 8 years ago
Missing fields

bicycle1885 opened this issue almost 8 years ago
Move file format readers and writers in separated modules.

bicycle1885 opened this issue almost 8 years ago
Any interest in statistical genetics from BioJulia community?

klkeys opened this issue almost 8 years ago
WIP: masked sequence

bicycle1885 opened this pull request almost 8 years ago
[Proposal] New parser design for faster parsing.

bicycle1885 opened this issue almost 8 years ago
The coalescent in Bio.jl

SabrinaJaye opened this issue almost 8 years ago
Allocations in `FASTAReader`

pwl opened this issue almost 8 years ago
biojl.org is sometimes down

jgreener64 opened this issue about 8 years ago
liftOver capable IntervalCollection

timbitz opened this pull request about 8 years ago
BigWig IO functions

yuifu opened this issue about 8 years ago
Distributed and Threaded Parallelism in the BioJulia Suite

ChrisRackauckas opened this issue about 8 years ago
HEADS UP: Breaking change in LightGraphs API

sbromberger opened this issue about 8 years ago
The interval tree may be much slower than the nested containment list.

bicycle1885 opened this issue over 8 years ago
Performant mutation counting.

SabrinaJaye opened this pull request over 8 years ago
Furthur performance improvements to Bio.Var

SabrinaJaye opened this issue over 8 years ago
Get nucleotide from BAM at specific mapped position

bdeonovic opened this issue over 8 years ago
Offboarding & Onboarding

SabrinaJaye opened this issue over 8 years ago
BioJulia Apps Package and Distribution

SabrinaJaye opened this issue over 8 years ago
Genetic distance computation framework.

SabrinaJaye opened this issue over 8 years ago
Newick and extended Newick from PhyloNetworks

cecileane opened this issue over 8 years ago
Incoroprate an FOSGAA global alignment

SabrinaJaye opened this pull request over 8 years ago
Progress of my project (sequence analysis)

bicycle1885 opened this issue over 8 years ago
Install BLAST+ for AppVeyor (Windows).

bicycle1885 opened this issue over 8 years ago
Travis hangs on OS X

bicycle1885 opened this issue over 8 years ago
Feature Request: intersecting VCFs, BAMs, GFFs, etc

bdeonovic opened this issue over 8 years ago
Indexes

SabrinaJaye opened this pull request over 8 years ago
Genotype Count Matrices for Population Genetics

SabrinaJaye opened this issue over 8 years ago
Phylo Rework

SabrinaJaye opened this pull request over 8 years ago
Phylo revival

SabrinaJaye opened this pull request over 8 years ago
Entrez utilities

abhijithch opened this issue over 8 years ago
benchmark comparisons

gideonite opened this issue about 9 years ago
Restriction Sites

ccsv opened this issue about 9 years ago
Multiple Sequence Alignment

ccsv opened this issue about 9 years ago
Community expansion: steps to being welcoming and inclusive

blahah opened this issue over 9 years ago
Teaching materials for BioJulia

blahah opened this issue over 9 years ago
Parallel BGZF

dcjones opened this issue over 9 years ago
RFC: Using external programs with BioJulia.

SabrinaJaye opened this issue over 9 years ago
RFC: Bioinformatics project management with BioJulia

SabrinaJaye opened this issue over 9 years ago
Toward short read alignment (JSoC 2015).

bicycle1885 opened this issue over 9 years ago
Missing things (before deprecation of BioSeq.jl)

diegozea opened this issue over 9 years ago
Accession number types

bicycle1885 opened this pull request over 9 years ago
RFC: Bio package system

blahah opened this issue over 9 years ago
Neuro Imaging

prcastro opened this issue over 9 years ago
Website

blahah opened this issue over 10 years ago
Integration with BioJS for visualisation

blahah opened this issue over 10 years ago
Visualization

diegozea opened this issue over 10 years ago
Visually enhanced notations

diegozea opened this issue over 10 years ago
Seq: shuffling

dcjones opened this issue over 10 years ago