github.com/BioJulia/Bio.jl issues | Ecosyste.ms: OpenCollective

I am trying to run 'using Biosequences' on Julia Version 1.4.1 on a Windows 10 PC.

ManaseeTW opened this issue over 4 years ago

I am trying the code 'using Biosequences'

ManaseeTW opened this issue over 4 years ago

when i try using bio julia i get this error message:

waweruk2001 opened this issue over 5 years ago

support Us to migrate from R lang (xcms) to Julia (BioJulia)

dorvan opened this issue over 5 years ago

Publish a new release ?

jonathanBieler opened this issue over 5 years ago

search function is undefined

229668880 opened this issue over 5 years ago

Error loading Bio

JokingHero opened this issue about 6 years ago

Bio revamp

SabrinaJaye opened this pull request over 6 years ago

Contributing files rollout

SabrinaJaye opened this pull request over 6 years ago

Clarify status of project in readme

jgreener64 opened this pull request over 6 years ago

Bio.Align to read bam file Julia 0.6.2

rgate opened this issue over 6 years ago

Activating Open Collective

monkeywithacupcake opened this pull request over 6 years ago

Broken Contributing link

miguelraz opened this issue over 6 years ago

Remove reader and remaining BioCore.jl files

SabrinaJaye opened this pull request about 7 years ago

Update the CI

SabrinaJaye opened this pull request about 7 years ago

Remove PDB update test that may fail

jgreener64 opened this pull request about 7 years ago

Decompose Bio.Structure

jgreener64 opened this pull request about 7 years ago

Indexed versions of {omega,phi,psi}angle

h3nnn4n opened this pull request about 7 years ago

[WIP] PDB file handling enhancements

joelselvaraj opened this pull request about 7 years ago

[WIP] Decompose Bio.Align and Bio.Intervals

SabrinaJaye opened this pull request about 7 years ago

Just a heads up...

sbromberger opened this issue about 7 years ago

Julia v0.6 compatability

CorySimon opened this issue over 7 years ago

Installing BioJulia using Docker

bicycle1885 opened this issue over 7 years ago

Installation of Bio.jl master branch; HttpParser fails

weinstockj opened this issue over 7 years ago

Pass the CI

SabrinaJaye opened this pull request over 7 years ago

CI failure

bicycle1885 opened this issue over 7 years ago

New data structure for biomolecular structures

bicycle1885 opened this issue over 7 years ago

Remove Iterators.jl dependency (not used)

iamed2 opened this pull request over 7 years ago

Decompose Var

SabrinaJaye opened this pull request over 7 years ago

findfirst and haskey for IntervalCollection

dcjones opened this pull request over 7 years ago

Discriminate between exact Interval matches and overlaps

phaverty opened this issue over 7 years ago

alternate name for `intersect` method?

phaverty opened this issue over 7 years ago

StringField broken on Julia 0.6

phaverty opened this issue over 7 years ago

Complete Bio.Seq decomposition

SabrinaJaye opened this pull request over 7 years ago

Test on Bio.Var

bicycle1885 opened this issue over 7 years ago

remove unused exported names

bicycle1885 opened this pull request over 7 years ago

fix importing in Bio.Var

bicycle1885 opened this pull request over 7 years ago

Checking whether or not an Interval overlaps with an Interval Collection

phbromley opened this issue over 7 years ago

check gap existence before making a kmer

bicycle1885 opened this pull request over 7 years ago

implement a faster and simpler eachkmer

bicycle1885 opened this pull request over 7 years ago

add isprimary for SAM.Record and BAM.Record

bicycle1885 opened this pull request over 7 years ago

Update CI URLs to point to new caching infrastructure

staticfloat opened this pull request over 7 years ago

add Interval(seqname, range) constructor

bicycle1885 opened this pull request over 7 years ago

add BigWig.values

bicycle1885 opened this pull request over 7 years ago

How to get kmer counts of a particular kmer?

CorySimon opened this issue over 7 years ago

add BigWig and BigBed modules

bicycle1885 opened this pull request over 7 years ago

Split Seq.Demultiplexer off to BioSeqDemuxers.jl

kdm9 opened this issue over 7 years ago

PDBx/mmCIF and PDBML/XML support.

bicycle1885 opened this issue over 7 years ago

Site counting framework completion

SabrinaJaye opened this pull request over 7 years ago

Make Bio.Intervals.Interval immutable.

bicycle1885 opened this issue over 7 years ago

Move organisation level issues

SabrinaJaye opened this issue over 7 years ago

Migrating to modular software organization

SabrinaJaye opened this issue over 7 years ago

Missing fields

bicycle1885 opened this issue over 7 years ago

Move file format readers and writers in separated modules.

bicycle1885 opened this issue over 7 years ago

Any interest in statistical genetics from BioJulia community?

klkeys opened this issue over 7 years ago

WIP: masked sequence

bicycle1885 opened this pull request over 7 years ago

[Proposal] New parser design for faster parsing.

bicycle1885 opened this issue over 7 years ago

The coalescent in Bio.jl

SabrinaJaye opened this issue almost 8 years ago

Allocations in `FASTAReader`

pwl opened this issue almost 8 years ago

biojl.org is sometimes down

jgreener64 opened this issue almost 8 years ago

liftOver capable IntervalCollection

timbitz opened this pull request almost 8 years ago

BigWig IO functions

yuifu opened this issue almost 8 years ago

Distributed and Threaded Parallelism in the BioJulia Suite

ChrisRackauckas opened this issue about 8 years ago

HEADS UP: Breaking change in LightGraphs API

sbromberger opened this issue about 8 years ago

The interval tree may be much slower than the nested containment list.

bicycle1885 opened this issue about 8 years ago

Performant mutation counting.

SabrinaJaye opened this pull request about 8 years ago

Furthur performance improvements to Bio.Var

SabrinaJaye opened this issue about 8 years ago

Get nucleotide from BAM at specific mapped position

bdeonovic opened this issue about 8 years ago

Offboarding & Onboarding

SabrinaJaye opened this issue about 8 years ago

BioJulia Apps Package and Distribution

SabrinaJaye opened this issue about 8 years ago

Genetic distance computation framework.

SabrinaJaye opened this issue about 8 years ago

Newick and extended Newick from PhyloNetworks

cecileane opened this issue about 8 years ago

Incoroprate an FOSGAA global alignment

SabrinaJaye opened this pull request over 8 years ago

Progress of my project (sequence analysis)

bicycle1885 opened this issue over 8 years ago

Install BLAST+ for AppVeyor (Windows).

bicycle1885 opened this issue over 8 years ago

Travis hangs on OS X

bicycle1885 opened this issue over 8 years ago

Feature Request: intersecting VCFs, BAMs, GFFs, etc

bdeonovic opened this issue over 8 years ago

Indexes

SabrinaJaye opened this pull request over 8 years ago

Genotype Count Matrices for Population Genetics

SabrinaJaye opened this issue over 8 years ago

Phylo Rework

SabrinaJaye opened this pull request over 8 years ago

Phylo revival

SabrinaJaye opened this pull request over 8 years ago

Entrez utilities

abhijithch opened this issue over 8 years ago

benchmark comparisons

gideonite opened this issue almost 9 years ago

Restriction Sites

ccsv opened this issue almost 9 years ago

Multiple Sequence Alignment

ccsv opened this issue almost 9 years ago

Community expansion: steps to being welcoming and inclusive

blahah opened this issue about 9 years ago

Teaching materials for BioJulia

blahah opened this issue about 9 years ago

Parallel BGZF

dcjones opened this issue about 9 years ago

RFC: Using external programs with BioJulia.

SabrinaJaye opened this issue about 9 years ago

RFC: Bioinformatics project management with BioJulia

SabrinaJaye opened this issue over 9 years ago

Toward short read alignment (JSoC 2015).

bicycle1885 opened this issue over 9 years ago

Missing things (before deprecation of BioSeq.jl)

diegozea opened this issue over 9 years ago

Accession number types

bicycle1885 opened this pull request over 9 years ago

RFC: Bio package system

blahah opened this issue over 9 years ago

Neuro Imaging

prcastro opened this issue over 9 years ago

Website

blahah opened this issue about 10 years ago

Integration with BioJS for visualisation

blahah opened this issue about 10 years ago

Visualization

diegozea opened this issue about 10 years ago

Visually enhanced notations

diegozea opened this issue about 10 years ago

Seq: shuffling

dcjones opened this issue over 10 years ago