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github.com/BioJulia/Bio.jl

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
https://github.com/BioJulia/Bio.jl

Alternative genetic codes for .

eb044105b463921a816c5a98a26d4fe2f27d307b authored about 10 years ago by Daniel Jones <[email protected]>
Translation.

43a293aab61499b2092c4e4e7ddee33d4e059a0b authored about 10 years ago by Daniel Jones <[email protected]>
Amino acid sequences, and eachkmer improvements.

d5a012ff64baa5f0fdd71d7bdd6aea6aec01cb13 authored about 10 years ago by Daniel Jones <[email protected]>
Fast kmer manipulation.

419ca7c080d5a31e98bd57c6a99cd64d54985000 authored about 10 years ago by Daniel Jones <[email protected]>
Separate seq code into multiple files.

cbd20c762884ae4e87b43f14b02e62224f184f9b authored about 10 years ago by Daniel Jones <[email protected]>
Nucleotide composition, iterating through kmers, better show.

124e77273e3fc8aa4cae20abc863a174ab715c93 authored over 10 years ago by Daniel Jones <[email protected]>
Mismatches.

cac4dbceb75d0d312ddc6461a09ee00c609ad0a1 authored over 10 years ago by Daniel Jones <[email protected]>
Fix RNASequence constructor.

d542e454c94201179ba1d713ba4a69fddccdfddc authored over 10 years ago by Daniel Jones <[email protected]>
Work on optimizing sequence construction.

732a5705b9a2bd67bfd4a9c7c28b03e079738efd authored over 10 years ago by Daniel Jones <[email protected]>
Complement, reverse, reverse complement.

771e4b643d2f5233b67fe82fb526e2096ff04a2f authored over 10 years ago by Daniel Jones <[email protected]>
Use bulk insertion for N mask. Better iterator.

e52cf2de374948d76082315eea3d5de510987326 authored over 10 years ago by Daniel Jones <[email protected]>
A few tests. Copying subsequences.

cbecfced05209ed341181585b48f9e71cf27edf8 authored over 10 years ago by Daniel Jones <[email protected]>
Sequences and subsequences are the same thing.

e4c5555326a70d3ff3e5d654bb27b8c124d25138 authored over 10 years ago by Daniel Jones <[email protected]>
Initial sequence work.

70fe2c7c97928807cec35ad8c713eaf8a6977949 authored over 10 years ago by Daniel Jones <[email protected]>
Merge pull request #12 from dcjones/master

Require julia 0.3

26547403ebaaabc5e7ece07f0d8ee73656c4d744 authored over 10 years ago by Richard Smith-Unna <[email protected]>
Require julia 0.3

878be3bb8b900c7d0fde7ee56f67b73409c740aa authored over 10 years ago by Daniel Jones <[email protected]>
Merge pull request #11 from Blahah/travis

fix Travis integration

c2df86ed7fc2dec63e706e3e7f68cb8325a162ff authored over 10 years ago by Daniel Jones <[email protected]>
attempted travis fix - run tests from current directory

edda1900a74cd88a672bfd7c2210df5f851582cc authored over 10 years ago by Richard Smith <[email protected]>
Merge pull request #10 from Blahah/basic_structure

basic structure and test setup (fix #2, #3)

a3c370bbd0e3297e25ff51e3ed54bbaa17284381 authored over 10 years ago by Ben J. Ward <[email protected]>
basic structure and test setup

c669d492afedc50dd32ce40d6570ad350d3811d0 authored over 10 years ago by Richard Smith <[email protected]>
update Gitter link to the public room

9712fcae36fc78aa41e3ce137eeb15d7c5a53eb2 authored over 10 years ago by Richard Smith-Unna <[email protected]>
add Gitter room to README

384994f630376eb9f7afc8ebc9198702be881946 authored over 10 years ago by Richard Smith-Unna <[email protected]>
Merge pull request #1 from kmsquire/autogenerate_structure

Added Autogenerated structure files

ba5a00a021787b6677e69a48f4370fea894ceb01 authored over 10 years ago by Richard Smith <[email protected]>
Added Autogenerated structure files

c348c6108d41f35aa450a62e9137cc186efbe2a6 authored over 10 years ago by Kevin Squire <[email protected]>
Update README.md

89188f8d3d2d84f327f097d3c979ce91dd3e21f8 authored over 10 years ago by Richard Smith <[email protected]>
Update README.md

9a2c4a0310ba9710629144d780115f4d4bae042e authored over 10 years ago by Richard Smith <[email protected]>
Update README.md

6455872ff2f255c68cfb188896ef8fe175a3e81c authored over 10 years ago by Richard Smith <[email protected]>
Update README.md

4aca7de7ca2f4f09291e27d2b5eb34fafc8c8608 authored over 10 years ago by Richard Smith <[email protected]>
Update README.md

c87f13be76820f307447a2005a2683905ee2d873 authored over 10 years ago by Richard Smith <[email protected]>
Initial commit

3193967d91dfdfa723793ee978f43895b10e132b authored over 10 years ago by Richard Smith <[email protected]>