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github.com/BioJulia/Bio.jl
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
https://github.com/BioJulia/Bio.jl
Alternative genetic codes for .
eb044105b463921a816c5a98a26d4fe2f27d307b authored over 10 years ago by Daniel Jones <[email protected]>
eb044105b463921a816c5a98a26d4fe2f27d307b authored over 10 years ago by Daniel Jones <[email protected]>
Translation.
43a293aab61499b2092c4e4e7ddee33d4e059a0b authored over 10 years ago by Daniel Jones <[email protected]>
43a293aab61499b2092c4e4e7ddee33d4e059a0b authored over 10 years ago by Daniel Jones <[email protected]>
Amino acid sequences, and eachkmer improvements.
d5a012ff64baa5f0fdd71d7bdd6aea6aec01cb13 authored over 10 years ago by Daniel Jones <[email protected]>
d5a012ff64baa5f0fdd71d7bdd6aea6aec01cb13 authored over 10 years ago by Daniel Jones <[email protected]>
Fast kmer manipulation.
419ca7c080d5a31e98bd57c6a99cd64d54985000 authored over 10 years ago by Daniel Jones <[email protected]>
419ca7c080d5a31e98bd57c6a99cd64d54985000 authored over 10 years ago by Daniel Jones <[email protected]>
Separate seq code into multiple files.
cbd20c762884ae4e87b43f14b02e62224f184f9b authored over 10 years ago by Daniel Jones <[email protected]>
cbd20c762884ae4e87b43f14b02e62224f184f9b authored over 10 years ago by Daniel Jones <[email protected]>
Nucleotide composition, iterating through kmers, better show.
124e77273e3fc8aa4cae20abc863a174ab715c93 authored over 10 years ago by Daniel Jones <[email protected]>
124e77273e3fc8aa4cae20abc863a174ab715c93 authored over 10 years ago by Daniel Jones <[email protected]>
Mismatches.
cac4dbceb75d0d312ddc6461a09ee00c609ad0a1 authored over 10 years ago by Daniel Jones <[email protected]>
cac4dbceb75d0d312ddc6461a09ee00c609ad0a1 authored over 10 years ago by Daniel Jones <[email protected]>
Fix RNASequence constructor.
d542e454c94201179ba1d713ba4a69fddccdfddc authored over 10 years ago by Daniel Jones <[email protected]>
d542e454c94201179ba1d713ba4a69fddccdfddc authored over 10 years ago by Daniel Jones <[email protected]>
Work on optimizing sequence construction.
732a5705b9a2bd67bfd4a9c7c28b03e079738efd authored over 10 years ago by Daniel Jones <[email protected]>
732a5705b9a2bd67bfd4a9c7c28b03e079738efd authored over 10 years ago by Daniel Jones <[email protected]>
Complement, reverse, reverse complement.
771e4b643d2f5233b67fe82fb526e2096ff04a2f authored over 10 years ago by Daniel Jones <[email protected]>
771e4b643d2f5233b67fe82fb526e2096ff04a2f authored over 10 years ago by Daniel Jones <[email protected]>
Use bulk insertion for N mask. Better iterator.
e52cf2de374948d76082315eea3d5de510987326 authored over 10 years ago by Daniel Jones <[email protected]>
e52cf2de374948d76082315eea3d5de510987326 authored over 10 years ago by Daniel Jones <[email protected]>
A few tests. Copying subsequences.
cbecfced05209ed341181585b48f9e71cf27edf8 authored over 10 years ago by Daniel Jones <[email protected]>
cbecfced05209ed341181585b48f9e71cf27edf8 authored over 10 years ago by Daniel Jones <[email protected]>
Sequences and subsequences are the same thing.
e4c5555326a70d3ff3e5d654bb27b8c124d25138 authored over 10 years ago by Daniel Jones <[email protected]>
e4c5555326a70d3ff3e5d654bb27b8c124d25138 authored over 10 years ago by Daniel Jones <[email protected]>
Initial sequence work.
70fe2c7c97928807cec35ad8c713eaf8a6977949 authored over 10 years ago by Daniel Jones <[email protected]>
70fe2c7c97928807cec35ad8c713eaf8a6977949 authored over 10 years ago by Daniel Jones <[email protected]>
Merge pull request #12 from dcjones/master
Require julia 0.3
26547403ebaaabc5e7ece07f0d8ee73656c4d744 authored over 10 years ago by Richard Smith-Unna <[email protected]>
Require julia 0.3
878be3bb8b900c7d0fde7ee56f67b73409c740aa authored over 10 years ago by Daniel Jones <[email protected]>
878be3bb8b900c7d0fde7ee56f67b73409c740aa authored over 10 years ago by Daniel Jones <[email protected]>
Merge pull request #11 from Blahah/travis
fix Travis integration
c2df86ed7fc2dec63e706e3e7f68cb8325a162ff authored over 10 years ago by Daniel Jones <[email protected]>
attempted travis fix - run tests from current directory
edda1900a74cd88a672bfd7c2210df5f851582cc authored over 10 years ago by Richard Smith <[email protected]>
edda1900a74cd88a672bfd7c2210df5f851582cc authored over 10 years ago by Richard Smith <[email protected]>
Merge pull request #10 from Blahah/basic_structure
basic structure and test setup (fix #2, #3)
a3c370bbd0e3297e25ff51e3ed54bbaa17284381 authored over 10 years ago by Ben J. Ward <[email protected]>
basic structure and test setup
c669d492afedc50dd32ce40d6570ad350d3811d0 authored over 10 years ago by Richard Smith <[email protected]>
c669d492afedc50dd32ce40d6570ad350d3811d0 authored over 10 years ago by Richard Smith <[email protected]>
update Gitter link to the public room
9712fcae36fc78aa41e3ce137eeb15d7c5a53eb2 authored almost 11 years ago by Richard Smith-Unna <[email protected]>
9712fcae36fc78aa41e3ce137eeb15d7c5a53eb2 authored almost 11 years ago by Richard Smith-Unna <[email protected]>
add Gitter room to README
384994f630376eb9f7afc8ebc9198702be881946 authored almost 11 years ago by Richard Smith-Unna <[email protected]>
384994f630376eb9f7afc8ebc9198702be881946 authored almost 11 years ago by Richard Smith-Unna <[email protected]>
Merge pull request #1 from kmsquire/autogenerate_structure
Added Autogenerated structure files
ba5a00a021787b6677e69a48f4370fea894ceb01 authored almost 11 years ago by Richard Smith <[email protected]>
Added Autogenerated structure files
c348c6108d41f35aa450a62e9137cc186efbe2a6 authored almost 11 years ago by Kevin Squire <[email protected]>
c348c6108d41f35aa450a62e9137cc186efbe2a6 authored almost 11 years ago by Kevin Squire <[email protected]>
Update README.md
89188f8d3d2d84f327f097d3c979ce91dd3e21f8 authored almost 11 years ago by Richard Smith <[email protected]>
89188f8d3d2d84f327f097d3c979ce91dd3e21f8 authored almost 11 years ago by Richard Smith <[email protected]>
Update README.md
9a2c4a0310ba9710629144d780115f4d4bae042e authored almost 11 years ago by Richard Smith <[email protected]>
9a2c4a0310ba9710629144d780115f4d4bae042e authored almost 11 years ago by Richard Smith <[email protected]>
Update README.md
6455872ff2f255c68cfb188896ef8fe175a3e81c authored almost 11 years ago by Richard Smith <[email protected]>
6455872ff2f255c68cfb188896ef8fe175a3e81c authored almost 11 years ago by Richard Smith <[email protected]>
Update README.md
4aca7de7ca2f4f09291e27d2b5eb34fafc8c8608 authored almost 11 years ago by Richard Smith <[email protected]>
4aca7de7ca2f4f09291e27d2b5eb34fafc8c8608 authored almost 11 years ago by Richard Smith <[email protected]>
Update README.md
c87f13be76820f307447a2005a2683905ee2d873 authored almost 11 years ago by Richard Smith <[email protected]>
c87f13be76820f307447a2005a2683905ee2d873 authored almost 11 years ago by Richard Smith <[email protected]>
Initial commit
3193967d91dfdfa723793ee978f43895b10e132b authored almost 11 years ago by Richard Smith <[email protected]>
3193967d91dfdfa723793ee978f43895b10e132b authored almost 11 years ago by Richard Smith <[email protected]>