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github.com/BioJulia/GenomicAnnotations.jl


https://github.com/BioJulia/GenomicAnnotations.jl

Removed unnecessary line

666a651c292ac10abda05f77cc103b463bc42268 authored over 4 years ago by Karl Dyrhage <[email protected]>
Added examples

447353308d3154bd205ca5d66710e73c2880a6f3 authored over 4 years ago by Karl Dyrhage <[email protected]>
Merge pull request #3 from JuliaTagBot/master

Install TagBot as a GitHub Action

ba96a1afe6f637a082c594e196be8265900cf0df authored almost 5 years ago by kdyrhage <[email protected]>
Install TagBot as a GitHub Action

85bf86452dc55590c2cee0bd7f50c84e743a57fc authored almost 5 years ago by Julia TagBot <[email protected]>
Removed comments

358aa798ce7b8a461e11813264d7c9594f79bad4 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Exporting readgff and printgff

885a224e700af8d40f1f8efb98cc1ca304eb112d authored almost 5 years ago by Karl Dyrhage <[email protected]>
Added support for trailing semicolons, and for multivalue attributes

00c5736e0c7269a74b24e961307536503e688263 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Added GFF parser

fd0c1979f7e24a7d51b99f210195c88861708365 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Simplified genes_special_cases!()

965b0443f5fe7e86c0caae248a02aabdc9bd7246 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Added up/downstream() and neighbour()

a6b555b59c94698968282b3494346c22e28c28c1 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Fixed incorrect docstring reference

e6c35dcf01ef4da6c7d0c8114fe8413d3907f05b authored about 5 years ago by Karl Dyrhage <[email protected]>
Fixed incorrect docstring reference

0f3cad3665cbe2bec3ab932791c493b946df876b authored about 5 years ago by Karl Dyrhage <[email protected]>
Fixed incorrect docstring reference

fd5ad0a25cc328ec276d4dce8010984c76bb58ab authored about 5 years ago by Karl Dyrhage <[email protected]>
Added GZip compat entry

53ff4b8bb6f14c3250f1c4ead00b9a2237154245 authored about 5 years ago by Karl Dyrhage <[email protected]>
Merge branch 'master' of github.com:kdyrhage/GenomicAnnotations.jl

8888ef2c8a4dc5d9c209a6fac6a2e71e3ecc6f08 authored about 5 years ago by Karl Dyrhage <[email protected]>
Updated version number

b0d1e65973d961007cfad4cab931fbfae93afd46 authored about 5 years ago by Karl Dyrhage <[email protected]>
Delete REQUIRE

4b365bad3c49804aa54b734483662b670490590e authored about 5 years ago by kdyrhage <[email protected]>
Delete Manifest.toml

a9a5fe037288aa3fa9ad10d8e6e4d53b42ed62cc authored about 5 years ago by kdyrhage <[email protected]>
Allow readgbk to take an IOStream

fa47b8a91f939e7c90c83f192f0c62104e2095fc authored about 5 years ago by Karl Dyrhage <[email protected]>
Updated sequence() docstring

7ca1c0437d2ce6c6fcf32f5071779974c2ae2a1f authored about 5 years ago by Karl Dyrhage <[email protected]>
Fixed typo

6b792835e451876984d2f08e0779728a7ec7e079 authored about 5 years ago by Karl Dyrhage <[email protected]>
Added checks for v1.3

7a33c621a4ce9206b55fcd77833deba0a57a6959 authored about 5 years ago by Karl Dyrhage <[email protected]>
Added translate keyword to sequence()

01dc5442296619211d9db0c1a0f227c1606d4560 authored about 5 years ago by Karl Dyrhage <[email protected]>
Updated docs

ca8e6de4accd4b4edbdef8b7d562b59bc2bedef8 authored about 5 years ago by Karl Dyrhage <[email protected]>
Updated Documenter version

cff69f1303d179a78302e55f890bde68ac684bc8 authored about 5 years ago by Karl Dyrhage <[email protected]>
Updated docs

747b313c78b2d510fce425200391f1707abc4786 authored about 5 years ago by Karl Dyrhage <[email protected]>
Removed iscds

9c592176492ad74756174a82a874399cd781567f authored about 5 years ago by Karl Dyrhage <[email protected]>
Updated README

11961d2350d22bbf684efb4776c4ee9178600832 authored about 5 years ago by Karl Dyrhage <[email protected]>
Updated macro to allow an Array{Chromosome}, to ignore Ref(), and to take new keywords (CDS, rRNA, etc.)

51f39f413d72a05e02a00d19b3e014aee7db1d05 authored about 5 years ago by Karl Dyrhage <[email protected]>
Added iscomplete()

38153a40017a5547efd758744020fc55df0a4d20 authored about 5 years ago by Karl Dyrhage <[email protected]>
Changed Gene structure and API

d70ea7f8ad5188b3e73df5c1691086e886d66226 authored about 5 years ago by Karl Dyrhage <[email protected]>
Added docs badge

5a19426e56b4836444e365b6164798f826ad7619 authored over 5 years ago by Karl Dyrhage <[email protected]>
Fixed Documenter

63289cea62aff832c3c7c2f6a48fe07caf4da475 authored over 5 years ago by Karl Dyrhage <[email protected]>
Updated for BioJuliaRegistry

666d27613817fb91c15f04cf8e87ba0cda81d24f authored over 5 years ago by Karl Dyrhage <[email protected]>
Travis magic

444867403ef763ab74684b8e9945f37bce69d465 authored over 5 years ago by Karl Dyrhage <[email protected]>
Added documentation with Documenter.jl

e895a482e6beb0621286d4576247f18d78e49e28 authored over 5 years ago by Karl Dyrhage <[email protected]>
Renamed pushproperty! variable names to better reflect terminology

74cfe199bf6ae329f0ccad49e415afe10815b830 authored over 5 years ago by Karl Dyrhage <[email protected]>
Updated docs to use FASTX

5ea9f25a87e1b1ad9bfacfa639850305a8edc7d2 authored over 5 years ago by Karl Dyrhage <[email protected]>
Improved documentations

f0b5e5e67dc4e1f2587ee0468473abc454bafb3c authored over 5 years ago by Karl Dyrhage <[email protected]>
Updated readgbk docstring

df785783f76d1e1220befd1d414612bfaaa72500 authored over 5 years ago by Karl Dyrhage <[email protected]>
Added support for the join operator, and more documentation

c766efb7f7bb4e637f4739a9044d59ceccd309fe authored over 5 years ago by Karl Dyrhage <[email protected]>
Updated version

1a8529166714290544e2e429f1b6d0ee426b6c08 authored over 5 years ago by Karl Dyrhage <[email protected]>
Updated for BioSequences v2.0.0

d48ae07cd3ee263f55e24c27506b28b6ebc91ce3 authored over 5 years ago by Karl Dyrhage <[email protected]>
Rearranged examples in README.md

4a0a21f79b933bdb5b22354e163c16707927e408 authored over 5 years ago by kdyrhage <[email protected]>
Added compat

e22f9216c7cf4294a67116bb25c9755ecb2a331f authored over 5 years ago by Karl Dyrhage <[email protected]>
Remove julia-0.7 support

91242493c325a55906955dbc5c1df2d8f11114a4 authored over 5 years ago by Karl Dyrhage <[email protected]>
Updated version number

f08b7591470d00ff48de8aff3e096610f95bb974 authored over 5 years ago by Karl Dyrhage <[email protected]>
Added

8364161bd956c9aec20388e9c3f15f8ef6c254b2 authored over 5 years ago by Karl Dyrhage <[email protected]>
Updated for DataFrames v0.19.0

cff6aa395922b2bc6b0b4dfa939f4f8948a8a6a8 authored over 5 years ago by Karl Dyrhage <[email protected]>
Updated version number

b925f9df7da257aba92b6ad552cc3ac8b423a247 authored almost 6 years ago by Karl Dyrhage <[email protected]>
Updated UUID

f4b753b73b0471a8da286cbd6340455babe65eca authored almost 6 years ago by Karl Dyrhage <[email protected]>
Updated README to include new features

45eb533f91ed54db0153338be1c5251a65eff535 authored almost 6 years ago by Karl Dyrhage <[email protected]>
Added special cases to @genes

0a51534ca0d5f85f8cdcd0305d447fc39e1db8f7 authored almost 6 years ago by Karl Dyrhage <[email protected]>
Added GZip.jl as dependency

a07c822b54f7b1804387fe7c5f74e226ae7bf8a7 authored about 6 years ago by Karl Dyrhage <[email protected]>
Added GZip.jl as dependency

f71afae16337df2cac7d18a5eb8e339ffa7ca951 authored about 6 years ago by Karl Dyrhage <[email protected]>
Added GZip.jl as dependency

3ef380ae0aefceb2e3fbb6091924e456961c0f38 authored about 6 years ago by Karl Dyrhage <[email protected]>
Add 'forceany' keyword to pushproprety

4a4bd48a04db2c3adcecd90d688922ba56c2ee42 authored about 6 years ago by Karl Dyrhage <[email protected]>
Allow '^' in positions

d71a1b795e03b8643c00ff55fd4942b9b9da6387 authored about 6 years ago by Karl Dyrhage <[email protected]>
Add precompilation

baa57943e14d87b0b1e188d18fa728a92760f2db authored about 6 years ago by Karl Dyrhage <[email protected]>
Updated README

07016326ebaed64dd9711bdba792b71bc1a41b36 authored about 6 years ago by Karl Dyrhage <[email protected]>
Updated README

eefc9e407142121266d9c59692b6b4fc5ff691d8 authored about 6 years ago by Karl Dyrhage <[email protected]>
Updated test dependencies

8c183ec5883af23acfa215e2dcb1f9f323086989 authored about 6 years ago by Karl Dyrhage <[email protected]>
Updated test dependencies

d8e64383a6de8fdace98d49c1da34765fc57f004 authored about 6 years ago by Karl Dyrhage <[email protected]>
Travis

d6c705d3b1dcf590c5923cca044d275c3cf7eb06 authored about 6 years ago by Karl Dyrhage <[email protected]>
Added REQUIRE

69a632bc23dd736bfba0ace0d94c16f0cd74259b authored about 6 years ago by Karl Dyrhage <[email protected]>
Added a plasmid to example.gbk for testing

46170d154f340fff124d005dd04e953281cad4c5 authored about 6 years ago by Karl Dyrhage <[email protected]>
Documentation update

07d12c7b47fe2cd797d3c18ae09e459718512881 authored over 6 years ago by Karl Dyrhage <[email protected]>
Added more tests

45cfb69876665d15a30e31bd4b6ac9d4d559baec authored over 6 years ago by Karl Dyrhage <[email protected]>
Added example

6ce26e94162a9a579b02f70979104e6151c7ad48 authored over 6 years ago by Karl Dyrhage <[email protected]>
Added ability to read/write feature lines with order(...)

8596eca1f4e09611a3b7dbf4686f253d387f1bbd authored over 6 years ago by Karl Dyrhage <[email protected]>
Fixed Chromosome() bug

103878139e3f66650a4cdf9a2e96ecb8f6b35535 authored over 6 years ago by Karl Dyrhage <[email protected]>
Made sequence(::Gene) consider the strand

89b6a1592ced97b1ef1370f110aefc9eff040a45 authored over 6 years ago by Karl Dyrhage <[email protected]>
Minor changes

5f7839e0d980621e76eafb51d20de9fb0177b6cb authored over 6 years ago by Karl Dyrhage <[email protected]>
Fixed sequence(::Gene) bugs

7a2b53dfc87c549179affbe2e927ed98af14b561 authored over 6 years ago by Karl Dyrhage <[email protected]>
Added more tests

0282fb280da50c84c9f487dafaa98dd4d6523820 authored over 6 years ago by Karl Dyrhage <[email protected]>
Export pushproperty!

e285461e71f471ac15ec5ffbf0a747b4bcad4123 authored over 6 years ago by Karl Dyrhage <[email protected]>
Fixed broadcast bug

a5e61ed2be64d1c0e7f5ea8a037036fec7a63aa2 authored over 6 years ago by Karl Dyrhage <[email protected]>
Updated @genes to allow symbols in get() expressions

a4af6b021777346f9f24709b973682827a0b1303 authored over 6 years ago by Karl Dyrhage <[email protected]>
Fixed delete! bug and added convert method for Locus

93d1505699061f10a3b6d60bc2ebfbc20d884433 authored over 6 years ago by Karl Dyrhage <[email protected]>
Updated README

cd8987a99780c7113f2fe13df39d0e3736331233 authored over 6 years ago by Karl Dyrhage <[email protected]>
Renamed genesequence() to sequence()

01e131f240631c01039f2fc6473fe93a30064ec6 authored over 6 years ago by Karl Dyrhage <[email protected]>
setindex!(::GeneDataView) update

32a36864cde31897c9d4f7e823953e3e46d36586 authored over 6 years ago by Karl Dyrhage <[email protected]>
Slight getproperty speedup

691faf959a284bc059ae7b92f49ae90983a649a9 authored over 6 years ago by Karl Dyrhage <[email protected]>
Added support for broadcasted setindex! for GeneDataViews

e5dc01311cf9450504b0f64a85f298678bc5cbc3 authored over 6 years ago by Karl Dyrhage <[email protected]>
Fixed setindex!

022359cb33cf18fb37e21d19d3ddaff5be8ed40b authored over 6 years ago by Karl Dyrhage <[email protected]>
Added syntax highlighting

e62da08129741a4b2696270dc81794a465cfbc3d authored over 6 years ago by Karl Dyrhage <[email protected]>
Added BioSequences as dependency

020b6530f14bbf6e35b2aab699bd7c6104e3d0cf authored over 6 years ago by Karl Dyrhage <[email protected]>
Added BioSequences as dependency

54d91448fb2f7df501087a4821bedcf665a487dd authored over 6 years ago by Karl Dyrhage <[email protected]>
Removed setproperty! for AbstractArray{Gene}

dc62de93d2430bc0ec83428bb16b699a89975b68 authored over 6 years ago by Karl Dyrhage <[email protected]>
Added examples to README

28aa665940a7269e51a4596f7044a56894733e9d authored over 6 years ago by Karl Dyrhage <[email protected]>
Added examples to README

d6618aa355f5e6cda79e3cc61268a1afa2b6ff2a authored over 6 years ago by Karl Dyrhage <[email protected]>
Updated tests

343fe2c36bb0f53435f61b9b9664e1e8d023774c authored over 6 years ago by Karl Dyrhage <[email protected]>
getproperty() speedup + added get() method

6dac0048e4e4232ae0f12bef6e6883e218d0c921 authored over 6 years ago by Karl Dyrhage <[email protected]>
Updates

17a5bea46246a3a5c6b684df102823fd352330f5 authored over 6 years ago by Karl Dyrhage <[email protected]>
Added GeneDataView

8f6a0b9983c4f7228fab097cdf416e491e7ac81a authored over 6 years ago by Karl Dyrhage <[email protected]>
Removed large example GenBank file

2f8113ce2d5d614914699bbbb31a3eed2875d047 authored over 6 years ago by Karl Dyrhage <[email protected]>
Initial commit

a76021582571c7afc6e5972587e8a050e12e31d0 authored over 6 years ago by Karl Dyrhage <[email protected]>
Updated LICENSE

6f58bd7fc87c2e2d046c512e170eb342330f1b5f authored over 6 years ago by Karl Dyrhage <[email protected]>
Initial commit

a952512313286164b0eb8a44c750621d76354eba authored over 6 years ago by kdyrhage <[email protected]>