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github.com/BioJulia/GenomicAnnotations.jl


https://github.com/BioJulia/GenomicAnnotations.jl

Fixing position(gene)

67f82c444f3c8cbcb7cf68ec27f81df46ca08b75 authored 9 months ago by Karl Dyrhage <[email protected]>
v0.3.7

0667362a508986123023692c68c9e62902e88363 authored 9 months ago by Karl Dyrhage <[email protected]>
Export position(gene)

34d1ec6d761694749a0d44f835bea2db5e82d261 authored 9 months ago by Karl Dyrhage <[email protected]>
v0.3.6

2bd346cb5d48ddbe3301672d4fc51a831701acde authored 9 months ago by Karl Dyrhage <[email protected]>
Added test/example.embl

ffd2911dd425a108c68f627871fe88ee2bb476a2 authored 10 months ago by Karl Dyrhage <[email protected]>
Updated TranscodingStreams to v0.10

c2b290107267b459e4246a6cc2fb7c580ece32fc authored 10 months ago by Karl Dyrhage <[email protected]>
Changed version to v0.3.5

e8bf127041f3f60e61e7fc86f0d0921c6e046d7d authored 10 months ago by Karl Dyrhage <[email protected]>
Added v1.10 to travis

9af6418c4e3ece6ecc9783f63c1123a7dc3a9e1f authored 10 months ago by Karl Dyrhage <[email protected]>
Added position(gene)

8b1d618328a25ef715ab32a4b7ee04013a736105 authored 10 months ago by Karl Dyrhage <[email protected]>
Added position(gene)

7374b19d2f8fdef65897d31daada53600f485113 authored 10 months ago by Karl Dyrhage <[email protected]>
Fixed bug affecting empty headers

b043398f84b942a205d99f459ef6fad055a2b04a authored 10 months ago by Karl Dyrhage <[email protected]>
Updated version to v0.3.4

573e0226d5473cec7743fbed837124346bbd17ff authored about 1 year ago by Karl Dyrhage <[email protected]>
Fixes #13

9a1494da97db8d928dc6718cf36ddd68495b28c8 authored about 1 year ago by Karl Dyrhage <[email protected]>
Updated to v0.3.3

a99d3f2d636240eb5083916bee284a555c4a9a61 authored about 1 year ago by Karl Dyrhage <[email protected]>
Merge pull request #10 from hsianktin/master

bugfix for delete!(genes)

a459172efb1ad6ede3785f689b109c1599c4a84d authored about 1 year ago by Karl Dyrhage <[email protected]>
Added julia v1.8 and v1.9 to travis

fd98dc7f1bcba50bf597be882fb40e1303432f11 authored about 1 year ago by Karl Dyrhage <[email protected]>
Added reader writer for the EMBL file format

a4b3b7bdab64a6a9cd72d13aac089794378e21f0 authored about 1 year ago by Karl Dyrhage <[email protected]>
bugfix for delete!(genes)

cb54afc2247361147c5d89ed0d776a49f8b88559 authored almost 2 years ago by Xiangting Li <[email protected]>
Fixed delete!(gene) bug

d615bea2fc66d9c5c5ab865c1119cda20529a363 authored almost 3 years ago by Karl Dyrhage <[email protected]>
Fixed delete!(gene) bug

19ad755d02ad702c266a626c28065fcc70215aee authored almost 3 years ago by Karl Dyrhage <[email protected]>
Fixed delete!(gene) bug

ed59559d01660820d565ba498026b735b5361ae0 authored almost 3 years ago by Karl Dyrhage <[email protected]>
Updated DataFrames API

4dca4fb2573245cc7d64b7e76917cd30749e8351 authored almost 3 years ago by Karl Dyrhage <[email protected]>
Updated version number

ec7c72700f43be77c1003f455fea7b99c83b40f4 authored almost 3 years ago by Karl Dyrhage <[email protected]>
Updated to BioSequences v3 API

f1fb6fe64dd0278040c1503a4780c0f99a2ce67b authored almost 3 years ago by Karl Dyrhage <[email protected]>
Updated travis versions

ec2209273f031760c777d6be079a7f232ab666ca authored almost 3 years ago by Karl Dyrhage <[email protected]>
Updated CodecZlib compat entry

569eb14961f800228452c86e4890b406a033192d authored almost 3 years ago by Karl Dyrhage <[email protected]>
Updated version number

d3c6912ea5ecdda48d22b9b271ea04bd1a4b20a2 authored almost 3 years ago by Karl Dyrhage <[email protected]>
Added CodecZlib dependency

bee3b95a1177d6aa2a30bc6a4c469649c43e2ab0 authored almost 3 years ago by Karl Dyrhage <[email protected]>
Fixed reorder bug

5a0c14a2ca2b9c021da2c14a7ba72612a5f8e69a authored almost 3 years ago by Karl Dyrhage <[email protected]>
Simplified Locus API

198d5d1f78399cc7a30f5a671a15322e2bf6c182 authored almost 3 years ago by Karl Dyrhage <[email protected]>
Added reorder

6bb75b6acc47c05cb1c68441a4a456f2fd165600 authored almost 3 years ago by Karl Dyrhage <[email protected]>
Removed CodecZlib dependency

60fc0e023dd41a1fe27f23bf56da165d696f825f authored over 3 years ago by Karl Dyrhage <[email protected]>
Updated version number to v0.3.0

e636a883ee573e1fce6d8ac1045f025ba9a089bc authored over 3 years ago by Karl Dyrhage <[email protected]>
Removed CodecZlib dependency

f7a85b42b3b357ca9a665a3acd667b8516e89af1 authored over 3 years ago by Karl Dyrhage <[email protected]>
Change escape sequence in @genes to $

36aa5bf1d95a56d218a67bb326b5b111f3c73911 authored over 3 years ago by Karl Dyrhage <[email protected]>
Revert BioSequences.sequence extension

c383b3e53243f5a12f2efade3605d59274a7511d authored over 3 years ago by Karl Dyrhage <[email protected]>
Extend BioSequences.sequence()

fab65622e79ec06e022d4b17b59631a649dbcdfe authored over 3 years ago by Karl Dyrhage <[email protected]>
Changed version to v0.2.4

67a2f78d3512523453ae933c0aab119a128674d9 authored over 3 years ago by Karl Dyrhage <[email protected]>
Updated DataFrame version

373df1d69ae02c371cdaa8d12f0076679a1d407e authored over 3 years ago by Karl Dyrhage <[email protected]>
gitignore

93c9c61ad1251fcf0d664b0a35e7301647898b00 authored over 3 years ago by Karl Dyrhage <[email protected]>
Updated version

ae0fba3e4928efbdf4dbb5c76c2105412a595fd0 authored over 3 years ago by Karl Dyrhage <[email protected]>
Updated documenter URL

1a8f9eb723dcef9387f6e326e349473c53e5e982 authored over 3 years ago by Karl Dyrhage <[email protected]>
Added GFF.Writer docstring

3c6131b240b0ed3498b85265832db263b04768b2 authored over 3 years ago by Karl Dyrhage <[email protected]>
Removed stable doc link

0a8e3a6598505abc251ad095cc3f363903e906e3 authored over 3 years ago by Karl Dyrhage <[email protected]>
Removed incorrect example

80beffe2e902f1e61f17d9f25d3e49180c359253 authored over 3 years ago by Karl Dyrhage <[email protected]>
Fixed trailing empty line bug

f33b802fdc96f821fa61da9e0067c25f7eee6216 authored over 3 years ago by Karl Dyrhage <[email protected]>
src/GenBank/reader.jl

601ec819e6724471ae16fa69061e955a8442837b authored over 3 years ago by Karl Dyrhage <[email protected]>
Updated docs URL

e1638935cc033a67f8f3e17c4885485f59f2c68d authored over 3 years ago by Karl Dyrhage <[email protected]>
Updated version number

8426c5d39622ca3123c05a476f48d91e4273fb47 authored over 3 years ago by Karl Dyrhage <[email protected]>
Updated version number

b1b738e2e20db50d51e854cd8114fca776445d6e authored over 3 years ago by Karl Dyrhage <[email protected]>
Removed old files

3e151335719bdbf576a558e42536975e7add0b38 authored over 3 years ago by Karl Dyrhage <[email protected]>
Removed old files

704f08d123af2976e42d37e3bfd7a1f90681a715 authored over 3 years ago by Karl Dyrhage <[email protected]>
Updated TagBot

fb2589d6a59b55eb95902504766853bdd19c6cad authored over 3 years ago by Karl Dyrhage <[email protected]>
Merge branch 'master' of https://github.com/kdyrhage/GenomicAnnotations.jl

bb5dfdb06b51bd8edf0ef8b92af15dbf7275acd3 authored over 3 years ago by Karl Dyrhage <[email protected]>
Updated README

0733e62fce51eecd92d12c62fddceee70590162a authored over 3 years ago by Karl Dyrhage <[email protected]>
Merge pull request #6 from kdyrhage/interface

Changing the read/write interface to mirror other BioJulia packages.

88843e21ebb19c942bf31e70b452514c3c2ac682 authored over 3 years ago by kdyrhage <[email protected]>
Updated docs

7f2ae009a9478277481a8c575be33342c4a0bc73 authored over 3 years ago by Karl Dyrhage <[email protected]>
Moved readgbk/readgff to parent module

9125b33cc3f4e647e0be9ad06b3181d4f5da7e1a authored over 3 years ago by Karl Dyrhage <[email protected]>
Changed julia versions for travis

7ffd9f145764d64799f203f5535fb0487eea10e0 authored over 3 years ago by Karl Dyrhage <>
Updated CodecZlib version

5cfa3a1e9a37c34a8d974d7e3933af87a920c457 authored over 3 years ago by Karl Dyrhage <>
More code cleaning

d01071ba6a8ef640e169d21ab178f9e6e158c6c2 authored over 3 years ago by Karl Dyrhage <>
Removed GZip

a98e67b4370ea3f8c2a92732ba85eb32401e3fa0 authored over 3 years ago by Karl Dyrhage <>
Cleaned up code

1e8f840e7afd3eb3dcd86136442e9ff4450e88c4 authored over 3 years ago by Karl Dyrhage <>
Cleaned up code

8a4a4cf6a790ec9ceb91c2f21f4454790f451b97 authored over 3 years ago by Karl Dyrhage <>
Removed broadcastable

91a33dccb7df4852d967d121073b6685f2f30ce4 authored over 3 years ago by Karl Dyrhage <[email protected]>
Updated tests

8ddbe56165af24a973b3f48e9b0798038f0df068 authored over 3 years ago by Karl Dyrhage <[email protected]>
Updated version and dependencies

4498ea090b0cca911811978b1cc9cd0ffcc2c989 authored over 3 years ago by Karl Dyrhage <[email protected]>
Switched to Reader/Writer interface

b3882b0166cafed3ff12f187d63f8582b87b8e7e authored over 3 years ago by Karl Dyrhage <[email protected]>
Updated version

9db8a0bce94ed0a7b787354a56ba2808da633bf9 authored almost 4 years ago by Karl Dyrhage <[email protected]>
Backwards compatibility

d805abdb8118a105a7dd81028524427565c2d2f7 authored almost 4 years ago by Karl Dyrhage <[email protected]>
Updated for Dataframes >0.20

64a0adc832de5c4e2ee52ff97f2ea48a69dfc66c authored almost 4 years ago by Karl Dyrhage <[email protected]>
Minor changes

903a4bf13707ceb3fa7cac61084bac4af6a18a9e authored almost 4 years ago by Karl Dyrhage <[email protected]>
Fixed bug with DataFrames >0.20

2298d4d8fc0ace55e899195a4a0ea3de6cb082ad authored almost 4 years ago by Karl Dyrhage <[email protected]>
Updated DataFrames version

cd1253e6362dbb703845844406c129ef2c168e0a authored almost 4 years ago by Karl Dyrhage <[email protected]>
Restrict DataFrames version to 0.19 and 0.20

af494f29ba462d2b7559e0f9c1e96d36c9d1270c authored about 4 years ago by Karl Dyrhage <[email protected]>
Updated version number

c7bf08fe63914922177e18b7cbeb34bc7b8568f6 authored about 4 years ago by Karl Dyrhage <[email protected]>
Updated TagBot cron schedule

6d078d3c56ffd876aaf49a037fc2c69157b2f2c1 authored about 4 years ago by Karl Dyrhage <[email protected]>
Added information about headers

91f800607f5d6c688f16d85594c6b30d7e9eca6f authored about 4 years ago by Karl Dyrhage <[email protected]>
Require full GFF3 header

af9730ce8d5208f76dc667847130e92ebd66346d authored about 4 years ago by Karl Dyrhage <[email protected]>
Removed 'matrix'

09629dbb495e4b80e8a9b687aaea1341064ad822 authored about 4 years ago by Karl Dyrhage <[email protected]>
Added .gitignore

8750045e612c6aa960fce75fa274fd6281d90216 authored about 4 years ago by Karl Dyrhage <[email protected]>
Travis

8ad2c66e1cb90e7395c463ad5360299465400f3b authored about 4 years ago by Karl Dyrhage <[email protected]>
Removed typo

02e2244e7e8304c5437bb4cfff241f9ab07300cc authored about 4 years ago by Karl Dyrhage <[email protected]>
DataFrames version

6400df871c1925d99e9d170d09e35a8f5687e66a authored about 4 years ago by Karl Dyrhage <[email protected]>
Added readgff docstring

9ebe26900b563ea17f88717e4453f68d92f4fa37 authored about 4 years ago by Karl Dyrhage <[email protected]>
Removed redundant function declaration

4741276200dc72d117c8d57dc36d2886120967be authored about 4 years ago by Karl Dyrhage <[email protected]>
Added GFF3 to docs

558b8c76024063b488817b6fe4f24a09342ca1cb authored about 4 years ago by Karl Dyrhage <[email protected]>
Updated DataFrames dep version

4be960aced16b14517fd97f4b4fe7f7e43e505ea authored about 4 years ago by Karl Dyrhage <[email protected]>
Updated package and dep versions

9fb2c326382ee0737d1ee770e8975d912980188f authored about 4 years ago by Karl Dyrhage <[email protected]>
Allow passing file paths to readgbk/readgff

509703cda4b5767f46d2dfa1c0623ce0e12ee846 authored about 4 years ago by Karl Dyrhage <[email protected]>
Added readgff to docs

045112494413eda8a5b6e94784d0d03f7304dff6 authored about 4 years ago by Karl Dyrhage <[email protected]>
Added readgff to README

e6bee3f8d3af0e5fe250300c7cc149b153512b24 authored about 4 years ago by Karl Dyrhage <[email protected]>
Added default header

e95f6258e66765f7a39b1bb7baf2d104df26c965 authored about 4 years ago by Karl Dyrhage <[email protected]>
Travis

5268e54d1f2b73b8fe4101f9d592aa15b10cbfd2 authored about 4 years ago by Karl Dyrhage <[email protected]>
Merge pull request #4 from kdyrhage/parsegff

Added GFF parser/writer, which allows for converting between GBK and GFF.

7b95f03109103d28424f3770bc279eddaee9e045 authored about 4 years ago by kdyrhage <[email protected]>
Merge branch 'master' of https://github.com/kdyrhage/GenomicAnnotations.jl

568e7cc5ec585dc26e58e3f4e33228036d491a87 authored about 4 years ago by Karl Dyrhage <[email protected]>
Travis

b14809b4fb8947919329ee2fb8792c1dfbe8132a authored about 4 years ago by Karl Dyrhage <[email protected]>
Enhanced GBK<->GFF conversion

f6391def75227677ac54bd514c6b1389767a336e authored about 4 years ago by Karl Dyrhage <[email protected]>
Added readgff test

e9eb9155f2371650dd582606104fc9662fd5bd2f authored about 4 years ago by Karl Dyrhage <[email protected]>
Separated readgbk and readgff

0d37af4320e5164a59dff3f30e6f3659e3544f84 authored about 4 years ago by Karl Dyrhage <[email protected]>