github.com/BioJulia/BioCore.jl commits | Ecosyste.ms: OpenCollective

Cap Documenter.jl to 0.19 on Travis (#19)

Documenter 0.20 will introduce breaking changes that will invalidate
existing make.jl setups. T...

1274fa4a5c0af036aef283efc54a464de86157a9 authored about 6 years ago by Morten Piibeleht <[email protected]>

Update CHANGELOG.md

9f899dc0623694bf43c42a916aa8d8d87ca46de8 authored about 6 years ago by Ben J. Ward <[email protected]>

Use string constructor, not convert in random_seq method

2a7a064892fd312f851d814c3631051922e28aa7 authored about 6 years ago by Ben J. Ward <[email protected]>

Update changelog

4c3e6fbc20e326583fbe7ba8494f06bbf0fce265 authored about 6 years ago by Ben J. Ward <[email protected]>

Fix another bug in bio_fmt_specimens

36f8652f075b0a91d514b876382d24b7745585ef authored about 6 years ago by Ben J. Ward <[email protected]>

Update changelog

b3f9c4a096d430d341359d7278dd65bef72660e2 authored about 6 years ago by Ben J. Ward <[email protected]>

fix_bio_fmt_specimens

d87118c3e965ee3dd276e85f738709163776a439 authored about 6 years ago by Ben J. Ward <[email protected]>

Import YAML

8fd10b3da272fa56d08e579bac58dc8467342564 authored about 6 years ago by Ben J. Ward <[email protected]>

Move functions

7d90e24e023eb55970067dc1005bf85fee1f87b2 authored over 6 years ago by Ben J. Ward <[email protected]>

Move read, iterate, and tryread to IO.jl

6a4022071d3394149e790bc220cb5f25e5d823d7 authored over 6 years ago by Ben J. Ward <[email protected]>

Comment out some lines of Ragel.jl

With a view to completely removing them later, I don't think they are
used in BioJulia codebases...

e9d6eb7297946dac4b33ffc33df670fb1aab92e0 authored over 6 years ago by Ben J. Ward <[email protected]>

Remove Nullables from REQUIRE

600fa9a0449974768f3c31af0c471a25f5805e56 authored over 6 years ago by Ben J. Ward <[email protected]>

A few julia 1.0 fixes. (#18)

139dbeb1fb372fb75856e8ff01d2e6e99f8f4ec7 authored over 6 years ago by Daniel C. Jones <[email protected]>

Merge branch 'master' of github.com:BioJulia/BioCore.jl

9762d4d4fc34764b92b8cb0028b9b524fe0587d0 authored over 6 years ago by Ben J. Ward <[email protected]>

Update changelog

8265abe4b2d87f02b21c16c563619674fbf1aff8 authored over 6 years ago by Ben J. Ward <[email protected]>

Julia 0.7/1.0 changes (#17)

41b2c7b5a33e5e580fc63234a49bba36f726979b authored over 6 years ago by Ben J. Ward <[email protected]>

Added specific dependencies section to changelog.

f6e2ad998493334d348b874b7687585d4c7a25ff authored over 6 years ago by Ben J. Ward <[email protected]>

Changelog release edits

23e7669aa854cd59e7e37ae04526d4a079d0c053 authored over 6 years ago by Ben J. Ward <[email protected]>

Add humans.md file

86625b0ac65f61962c98c3f354c23ae76c5c7f6c authored over 6 years ago by Ben J. Ward <[email protected]>

Manually curated changelog

e516bd7eaf121c23a3869b503ab4d9885daa1615 authored over 6 years ago by Ben J. Ward <[email protected]>

Contributing files rollout (#15)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

2298155697e6eb1cc6071788d7d0f71a6030e7c2 authored over 6 years ago by Ben J. Ward <[email protected]>

Fix documentation building (#12)

27ef0609b7221243999e7bb8e18e949785ea6c76 authored over 6 years ago by Ben J. Ward <[email protected]>

Readme fix

c3943fcc75295d8f1493f332247c79fdfc44812f authored over 6 years ago by Ben J. Ward <[email protected]>

More 0.7 compatiblity updates (#11)

* 0.7 updates

* using Cvoid in RecordHelper

* readme edits

86b8160d853f4d7e7abb19673215f3edae1e9ce4 authored over 6 years ago by Ben J. Ward <[email protected]>

Update README.md

46ccd5ee49db3db73cfe6838504eb910280dd424 authored over 6 years ago by Ben J. Ward <[email protected]>

Julia 0.7 compatibility and testing (#10)

* Removed depreceated syntax

* Updated README

* Updated docs generation files

* put bio...

d83bb8f14bec2ee0ffc5b85d69f5a34d4c8b2615 authored over 6 years ago by Ben J. Ward <[email protected]>

Added changelog

194236f246f30d6d19cab91292dc1d530e3c9e97 authored almost 7 years ago by Ben J. Ward <[email protected]>

get_bio_fmt_specimens improvements (#9)

* get_bio_fmt_specimens checks out the latest tag by default.

* Add fresh option

* Update ...

913b25fd6e1db3b2910e0c10721959cd0bd50979 authored almost 7 years ago by Ben J. Ward <[email protected]>

Fix dead link (#8)

9bf3acc2808f52ba2cf2224eff75a366cbea47dc authored about 7 years ago by Kevin Bonham <[email protected]>

[RTR]: Update get_fmt_specimens method (#6)

* Update get_fmt_specimens method

* Added git fetch origin and removed clone --depth 1

72d64744643ba817ef79e07418d8b9afe5620f67 authored over 7 years ago by Ben J. Ward <[email protected]>

update code generator functions for Automa 0.3 (#4)

* update code generator functions for Automa 0.3

* add kwargs

ceb7c992ba1022011af637075a6bbf830afb9974 authored over 7 years ago by Kenta Sato (佐藤建太) <[email protected]>

release 1.1.0 edits

58c0db4e8c28aeb2b91e794c0ad2ba6951cb90a4 authored over 7 years ago by Ben J. Ward <[email protected]>

BioCore.Testing module (#3)

* BioCore.Testing module

* fixes to the testing helper module

8599433bbeeaf3de6d4466128091869829333b25 authored over 7 years ago by Ben J. Ward <[email protected]>

add 0.6 to the TravisCI's list

And allow to fail on nightly.

8eefa802b9be3cc8750bf5f8c4a1bdf8843f9e50 authored over 7 years ago by Kenta Sato <[email protected]>

import BioCore in tests

55bea58c26ab6f7350a94e1d9216c8cc4544311b authored over 7 years ago by Kenta Sato <[email protected]>

fix deprecated type declaration syntax

bb259264a66e2b26af2fe3512e6cec495992bc2f authored over 7 years ago by Kenta Sato <[email protected]>

Update README.md

e32ef1e0bf5ad3a915b89345530c872b17070978 authored over 7 years ago by Ben J. Ward <[email protected]>

Updated readme

826fb0a8c7bf0743bdf1e6679be985a3615109d4 authored over 7 years ago by Ben J. Ward <[email protected]>

Added contributing and License files to docs

894a8509b8d4d44aa1f204ae8566ebebf1da0b0c authored over 7 years ago by Ben J. Ward <[email protected]>

Configured Documenter.jl

1b0a7133b0d1e57bc845b1b8813df677f28f683f authored over 7 years ago by Ben J. Ward <[email protected]>

travis.yml edit

e942134e13fa80e51e796fc71c1404fdbf3af19d authored over 7 years ago by Ben J. Ward <[email protected]>

Auto stash before merge of "master" and "origin/master"

90b111f47d82839b029578a40bd28561c1553d44 authored over 7 years ago by Ben J. Ward <[email protected]>

Basic project setup (#1)

* Added declare and exceptions

* File updates

* Readme update

* Read...

6cb429a127001fe50d1ede5e92848fda44f5bdb0 authored over 7 years ago by Ben J. Ward <[email protected]>

Edit to gitignore.

45d574af6110b5f954c109ce37f74dbb39009621 authored over 7 years ago by Ben J. Ward <[email protected]>

Added src files

Added IO, Ragel, ReaderHelper, StringFields

Added ds_store to gitignore

21948e23605d8bc2172d596521ceb527e2656e14 authored almost 8 years ago by Ben J. Ward <[email protected]>

Initial commit

238b17f548a47e5b3b6e84bff8f208fc1e4fb952 authored almost 8 years ago by Ben J. Ward <[email protected]>