Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/BioJulia/PopGenCore.jl

Core utilities for PopGen.jl, including the PopData type and file IO
https://github.com/BioJulia/PopGenCore.jl

Merge pull request #21 from BioJulia/compathelper/new_version/2023-05-02-01-15-00-411-01111483393

CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat)

6dbcd9b865e849755f70a73f1c0b7b8125b39e8e authored over 1 year ago by Pavel V. Dimens <[email protected]>
CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat)

92762b617f06ad197306322ed6cde76a3f2fbcac authored over 1 year ago by CompatHelper Julia <[email protected]>
Update README.md

730d19966547b5fb619061edf32f32cfa06ac0f4 authored over 1 year ago by Pavel V. Dimens <[email protected]>
Merge pull request #20 from BioJulia/net2dev

Update URLs from biojulia.net to biojulia.dev

cc5ddf373be5d0daf9233fb2774a11b3bac441c6 authored over 1 year ago by Pavel V. Dimens <[email protected]>
Update URLs from biojulia.net to biojulia.dev

b71dbdb5bf5e711dcdee4690922ab5d837a92027 authored over 1 year ago by Kevin Bonham <[email protected]>
compress gulfsharks source file

ecc4b3d274749ba55587338a38e095e7f2cb6bf7 authored over 2 years ago by pdimens <[email protected]>
add uinquebialleles()

574f94614b3d0c56015a59d43617daed6679d393 authored over 2 years ago by Pavel Dimens <[email protected]>
Update Project.toml

d3e954801430f4b4f68199e7e72567ca7fb14605 authored over 2 years ago by Pavel V. Dimens <[email protected]>
fix typo

c2c2363ebdba14d5da09adb48f86f96be20c113f authored over 2 years ago by Pavel Dimens <[email protected]>
integrate plink

98f6d8b2c2f62d3dd62aca4f717f3f31fb7b8918 authored over 2 years ago by Pavel Dimens <[email protected]>
Update downstream.yml

033ba7f3113369291019d2ccc5f2f6d9f0b02b8c authored over 2 years ago by Pavel V. Dimens <[email protected]>
bump to next minor version

6787f72564b9baf5b3ce042dfa7bd265169dfd0c authored over 2 years ago by Pavel Dimens <[email protected]>
error handling to catch incorrect missings

503728404b13403fa9335a40567b2848e1f3971a authored over 2 years ago by Pavel Dimens <[email protected]>
fix typo

6545fc833b0bbea09764b5ff2525f0347330599d authored over 2 years ago by Pavel Dimens <[email protected]>
rm deprecated function exports

623348558a975c3050fe82cacae2100b6062383a authored over 2 years ago by Pavel Dimens <[email protected]>
remove deprecated countmatrix calls

364221a701edc8306b02bfcdbb86d938fb761e7f authored over 2 years ago by Pavel Dimens <[email protected]>
leverage Val{} dispatch

48d0052eef27f6332d9ac369c4ec8a84d0fff9e4 authored over 2 years ago by Pavel Dimens <[email protected]>
fix another critical typo

a78a89dd5d86e61c35acec7659500e4b19809a34 authored over 2 years ago by Pavel Dimens <[email protected]>
fix critical typo

752376dd52954c31737fe78f790492118602281e authored over 2 years ago by Pavel Dimens <[email protected]>
allelematrix => matrix

9e12c5a8bff7d86bf18e8c4ee707c4cbae35dc5d authored over 2 years ago by Pavel Dimens <[email protected]>
add featurematrix

e4b48cbd17921f59b8e1cfebb282f6c2f410bc44 authored over 2 years ago by Pavel Dimens <[email protected]>
migrate from popgen (still testing)

78ea85ca484f924d91ce0308a25285e99a392cc8 authored over 2 years ago by Pavel Dimens <[email protected]>
fix for real

68a65b69a133d5bdb2723cdb93d9ba6b16c88e5c authored over 2 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/BioJulia/PopGenCore.jl into dev

13ef1228dbf5c5ed25eaac91430afc350ed0c704 authored over 2 years ago by Pavel Dimens <[email protected]>
fix truncatepath text parsing. Make it more generic

0ca0a8e06dc9f76763444652555783224529a13f authored over 2 years ago by Pavel Dimens <[email protected]>
fix typo

7d9439f9a70b28f1371a6bb763072f3a0e7bd09b authored over 2 years ago by Pavel V. Dimens <[email protected]>
fix truncatedpath

03c3fb277d0f6f7c3bf270b38832cb9d680f481d authored over 2 years ago by Pavel V. Dimens <[email protected]>
group by population first to avoid conflicts

98afcc169cf0eb87f157dd3ae5d65e7790fb5497 authored over 2 years ago by Pavel Dimens <[email protected]>
add method for tuple

87ae8893810ceefcd0faa8a93edf8c203d95f655 authored over 2 years ago by Pavel Dimens <[email protected]>
fix vers

a93becf80f4697ab50b3fd2c3140c41f619ed3c4 authored over 2 years ago by Pavel Dimens <[email protected]>
Merge pull request #18 from BioJulia/release-0.7.0

New version: v0.7.0

784c529d229e67ed834ede50e5f1db850be30883 authored over 2 years ago by Pavel V. Dimens <[email protected]>
Set version to v0.7.0

d015dec5c4d46fb3207c85c25fed84ec466b7a4e authored over 2 years ago by Pavel Dimens <[email protected]>
Set version to v0.7.1-DEV

45d85c9d8fe5637d67e4ae6faf1202162768c096 authored over 2 years ago by Pavel Dimens <[email protected]>
add dev text

335b4b65f4cf7a78d872ec7098a273f09b4ce656 authored over 2 years ago by Pavel Dimens <[email protected]>
add Baypass conversion

474e6c9d17419c1d3ad55877a25c74813896d021 authored over 2 years ago by Pavel Dimens <[email protected]>
fix typo

1c824eec3d30202addb3fe354c880aa23387b59e authored over 2 years ago by Pavel Dimens <[email protected]>
ishom logic more succinct

haploids as heterozygotes

b16bcead76c8392f063f4644680026e2a0d33c2b authored over 2 years ago by Pavel Dimens <[email protected]>
updates

409c847e0e113a546b16e4938ed32c1007b035ae authored over 2 years ago by Pavel Dimens <[email protected]>
fix test

f9261630e47ee8a03f575222bbf8065deb3dd00a authored over 2 years ago by Pavel Dimens <[email protected]>
add ZScoreTransform (oops)

b914682122aea70566ac0398c2ed622d319b996c authored over 2 years ago by Pavel Dimens <[email protected]>
add correct StatsBase deps

b29bd6f55eaa45a2cd220047477588c7ee8862b9 authored over 2 years ago by Pavel Dimens <[email protected]>
remove PopGen. prefix

012d0c0eedae27851f9e828a9b340cd20f39e9a4 authored over 2 years ago by Pavel Dimens <[email protected]>
move allelematrix* methods to Core

8330caad482bb2a338046e3e9e4e9381dd4a8b6d authored over 2 years ago by Pavel Dimens <[email protected]>
Update downstream.yml

2e9746ccf784e0617c9ad8b1921341a3cb56fd94 authored over 2 years ago by Pavel V. Dimens <[email protected]>
fix more pkgtests

050f69e5510941bcead427ce4076ae2482a76b1e authored over 2 years ago by Pavel Dimens <[email protected]>
few extra type assertions

a97dc186aadfd4971ddecc996c010c734c6821fb authored over 2 years ago by Pavel Dimens <[email protected]>
update functoin defintitions and tests

6332b77f52919411e6e5c478e4bd57dca2138ac2 authored over 2 years ago by Pavel Dimens <[email protected]>
add upper/lowertri2vec

60a331c2f7c4cff1fd30c974a2897e18b5567171 authored over 2 years ago by Pavel Dimens <[email protected]>
substantial optimization

bcb08eebb4f06d640a453f26f210e58bc43193ba authored over 2 years ago by Pavel Dimens <[email protected]>
optimize memory of genofreq

0b0c25ac606a6f8d894ae82e86c7cea74dc8a576 authored over 2 years ago by Pavel Dimens <[email protected]>
optimize memory of allelefreq

1b7408ded71875086a78f49664b8fb422d766dd0 authored over 2 years ago by Pavel Dimens <[email protected]>
update tests

2bf13bd7f0dc47d662f8a41d019215f4415a54c0 authored over 2 years ago by Pavel Dimens <[email protected]>
update tests

ac3df443aa923241812a5b23ca645aa85e02f711 authored over 2 years ago by Pavel Dimens <[email protected]>
adjustments

b4055acbcc6434f63309dd880ccbba71c0ae4987 authored over 2 years ago by Pavel Dimens <[email protected]>
bump to next version 6.0

65c46de72c86efbac562a3a83398bdbde59ee520 authored over 2 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/BioJulia/PopGenCore.jl into dev

33f694e4146f0261f0156935967ef5be5bd91734 authored over 2 years ago by Pavel Dimens <[email protected]>
first pass of optimizations

1e2c34e08f9c29d9907a891a7d9a5188e2b98b4d authored over 2 years ago by Pavel Dimens <[email protected]>
restore this after fix

32a3493467e61f1e4848cebd51203e9c3de7e358 authored over 2 years ago by Pavel Dimens <[email protected]>
fix introduced typo

cdc8e55a2d8f53e820facb1f167cd9aefefa1b64 authored over 2 years ago by Pavel Dimens <[email protected]>
better solution for sorting

d341647ec751bf3f8e1ca400ab7ba86fe8a6ff3b authored over 2 years ago by Pavel Dimens <[email protected]>
fix dropmissing inconsistency

8683735e8a9ce4137573a5ea9224690bf64d6b6a authored over 2 years ago by Pavel Dimens <[email protected]>
shorten the docstring

4a56a9f7b5734dbbabf21b4dfca011b294fd01e8 authored over 2 years ago by Pavel Dimens <[email protected]>
fix Vector{Bool} annotations

24f1a21d2f8a677a8b1abc4cd7de4b0078a8b5fc authored over 2 years ago by Pavel Dimens <[email protected]>
update conditionals test

7cb6854474916550b4361b33d990962f409fb466 authored over 2 years ago by Pavel Dimens <[email protected]>
fix bad annotations

60616eca61d428e249140f320ff8497d9955f8ff authored over 2 years ago by Pavel Dimens <[email protected]>
fix annotations

b2749d4f7be5d6ee82292c0a767b7bb2efb29422 authored over 2 years ago by Pavel Dimens <[email protected]>
extra annotations

93a8a8489e430cf04e6ec1d55ce9f4cefe4abb3e authored over 2 years ago by Pavel Dimens <[email protected]>
slight optimizations

552c8c83e770abef122c358b718e65a6b182d6c4 authored over 2 years ago by Pavel Dimens <[email protected]>
update conditionals

94bd0629d5d07fd72df37d2cf11a50a1e36d8712 authored over 2 years ago by Pavel Dimens <[email protected]>
update conditionals logic. Some optimizations

65db84988cb1dcc63a8bc9933e6fbe951da09ab4 authored over 2 years ago by Pavel Dimens <[email protected]>
fix more tests

54fc5e19d636c03ef8facfa4b2206a11f198a39f authored almost 3 years ago by Pavel Dimens <[email protected]>
update test

636f004f5e1152514c1746bafa4b88241ed8349b authored almost 3 years ago by Pavel Dimens <[email protected]>
fix deprecation/warning

6d2e1191b10655b8736bee6aeeb98b4f24a2c3fc authored almost 3 years ago by Pavel Dimens <[email protected]>
fix locations!

f76276904614b546e422129402acc85636ff8efd authored almost 3 years ago by Pavel Dimens <[email protected]>
add precompilation

bc31254c1719db7b9fbadb8475e41351d72193df authored almost 3 years ago by Pavel Dimens <[email protected]>
fix method

5cc9715707dead113b9fd700010bc6628c3d2e03 authored almost 3 years ago by Pavel Dimens <[email protected]>
add some precompile, add NamedTuple indexing

e7f77b6e46d979e2bd68c8d046d407f883157bfd authored almost 3 years ago by Pavel Dimens <[email protected]>
Update PopGenCore.jl

af07ad90ed73b5f2be97cb914abead707c13db3e authored almost 3 years ago by Pavel V. Dimens <[email protected]>
Update pkgtests.yaml

136ca2496ae2f44a4cc4542f42f98e57f80a24b3 authored almost 3 years ago by Pavel V. Dimens <[email protected]>
move all exports to package definition file

2818f9e855576d44ca3c9817d8f2ca3cf47dca88 authored almost 3 years ago by Pavel V. Dimens <[email protected]>
add location string-string vector method

c65b78e38f65f82363d53c0e95a294b755257072 authored almost 3 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #16 from BioJulia/compathelper/new_version/2022-01-20-01-15-36-540-02336516142

CompatHelper: bump compat for CSV to 0.10, (keep existing compat)

71ebdada3df37354c18515268daa91874d803b11 authored almost 3 years ago by Pavel V. Dimens <[email protected]>
CompatHelper: bump compat for CSV to 0.10, (keep existing compat)

66a1aa82b70741822540a5560734f68c51a83a4c authored almost 3 years ago by CompatHelper Julia <[email protected]>
make convertcoord more flexible

0fe9ad6d2b9df65b3a6df271a07c02096981b860 authored about 3 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/BioJulia/PopGenCore.jl into dev

151f98ed86212afbeb0d7241c4ad5bda05220267 authored about 3 years ago by Pavel Dimens <[email protected]>
add all the _ishXX methods

910be1924dec403dc0510327d80458177645f290 authored about 3 years ago by Pavel Dimens <[email protected]>
Update PopDataWrappers.jl

edda414c08ed6751bbed12151bb40e6681366bcb authored about 3 years ago by Pavel V. Dimens <[email protected]>
Update Iterators.jl

ef7edfe9082ab17a258fb957db398872493683ce authored about 3 years ago by Pavel V. Dimens <[email protected]>
export _isXXX

12060cdcff5615800f4a9f7ff1f79ca9b7f603c7 authored about 3 years ago by Pavel Dimens <[email protected]>
update phrasing

f0059901dadbed3a3a1cd4d4c274998f3a5b6970 authored about 3 years ago by Pavel Dimens <[email protected]>
wording upates

54ca9f7215baf12e7a644cb52126ec77b136758c authored about 3 years ago by Pavel Dimens <[email protected]>
export sampleinfo! and locusinfo!

a44df0d01c919f26d4230e4bae2e2eec31c24fd2 authored about 3 years ago by Pavel Dimens <[email protected]>
revert all lattitude to latitude

3125ac932d6636fc870b3ad639eb098a3d8850d5 authored about 3 years ago by Pavel Dimens <[email protected]>
convert all latitude to lattitude

778f6604d5c0659805ff91d474c3e2c82484fb2f authored about 3 years ago by Pavel Dimens <[email protected]>
overlooked issues

0c456cad2a0132612e72c91a1b99d4f689f98793 authored about 3 years ago by Pavel Dimens <[email protected]>
fix new locationdata! and genotype tests

4e278e5314cc91f8e291f367e9c31b459419887d authored about 3 years ago by Pavel Dimens <[email protected]>
rename locations => locationdata

0ce33b0a64404c720d64b74a9962dcbf5616414e authored about 3 years ago by Pavel Dimens <[email protected]>
address some methods

26d48c8f590a7eb2d25ce665425239f0be27b7af authored about 3 years ago by Pavel Dimens <[email protected]>
rm nightly from tests

718ebb8c2430f6bee441af9ee6796df80c44e1bc authored about 3 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/BioJulia/PopGenCore.jl into dev

1cbbef82568fef49733bc3a2decb7d5bcecb3c8e authored about 3 years ago by Pavel Dimens <[email protected]>