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github.com/BioJulia/SubstitutionModels.jl

Biological Sequence Substitution Models for Julia
https://github.com/BioJulia/SubstitutionModels.jl

Inconsistencies for inputs to create models

camilogarciabotero opened this issue over 1 year ago
Update URLs from biojulia.net to biojulia.dev

kescobo opened this pull request over 1 year ago
TagBot trigger issue

JuliaTagBot opened this issue over 3 years ago
Constructor consistency/documentation fix

jangevaare opened this pull request over 3 years ago
Fix package CI/update actions, and update [compat]

jangevaare opened this pull request over 3 years ago
CompatHelper: bump compat for BioSymbols to 5, (keep existing compat)

github-actions[bot] opened this pull request over 3 years ago
CompatHelper: bump compat for StaticArrays to 1, (keep existing compat)

github-actions[bot] opened this pull request over 3 years ago
Support BioSymbols 3.x to enable Julia 1.0 to pass?

jangevaare opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "BioSymbols" at version "4.0"

github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "StaticArrays" at version "0.12"

github-actions[bot] opened this pull request almost 5 years ago
Docs update

jangevaare opened this pull request over 5 years ago
Docs fix

jangevaare opened this pull request over 5 years ago
Docs no longer being generated

jangevaare opened this issue over 5 years ago
Expansion of constructors methods for Nucleic Acid Substitution Models

jangevaare opened this pull request over 5 years ago
Transition to Project.toml

jangevaare opened this pull request over 5 years ago
Scale q

kgori opened this pull request over 5 years ago
Fix typo in P() for TN93 and related models

kgori opened this pull request almost 6 years ago
Fix eigen

kgori opened this pull request almost 6 years ago
Cap Documenter.jl to 0.19 on Travis

mortenpi opened this pull request about 6 years ago
:art: changed substitution models to be mutable with setrate! function

coraallensavietta opened this pull request about 6 years ago
WIP: distances

jangevaare opened this pull request over 6 years ago
Fix LaTeX for P & Q matrix documentation

jangevaare opened this pull request over 6 years ago
Compilation error with Julia v1.0

kgori opened this issue over 6 years ago
Updates for Julia 0.7/1.0

jangevaare opened this pull request over 6 years ago
Contributing files rollout

SabrinaJaye opened this pull request over 6 years ago
Docs revamp

SabrinaJaye opened this pull request about 7 years ago
Some minor review edits.

SabrinaJaye opened this pull request about 7 years ago
Edits to CI infrastructure

SabrinaJaye opened this pull request over 7 years ago
Inline the Base.getindex method

SabrinaJaye opened this pull request over 7 years ago
Eliminate the need for an indexing lookup table

SabrinaJaye opened this pull request over 7 years ago
[WIP] Add genetic distance calculations under different substitution models

jangevaare opened this pull request over 7 years ago