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github.com/BioJulia/GFF3.jl


https://github.com/BioJulia/GFF3.jl

Merge branch 'master' into develop

a8fa0dd932783a634b89263bfe749d03c179fe23 authored over 1 year ago by Ciarán O'Mara <[email protected]>
Merge branch 'release/v0.2.3'

e3e92aacacf1da187fc1b0d42cf464c44bded7ae authored over 1 year ago by Ciarán O'Mara <[email protected]>
Update chat links

2edb2cdcd920a8fd9247de1a29571a512d3d1904 authored over 1 year ago by Ciarán O'Mara <[email protected]>
Increment version

b3b2051a225ad41266b09c014e364f505e618610 authored over 1 year ago by Ciarán O'Mara <[email protected]>
Increment FASTX compatibility

This commit closes #14.

e8becae23f8af49a90d41f8e2316cc00724f5e07 authored over 1 year ago by Ciarán O'Mara <[email protected]>
Add doi to README

c2a99f3e8208a377c81f60ca8ca0de5fd2687324 authored almost 2 years ago by Ciarán O'Mara <[email protected]>
Update TagBot workflow

ef5577d7daa00ec217aa66ed2df8526a8c4eec56 authored over 2 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'master' into develop

1a7f99797c1557d4a46785e8ebeeb8edbf305655 authored over 2 years ago by Ciarán O'Mara <[email protected]>
Merge pull request #13 from BioJulia/hotfix/biosequences

Remove BioSequences dependency.

6ba310e8167203426cbfe1686486dc3a6fc23ed6 authored over 2 years ago by Ciarán O'Mara <[email protected]>
Remove BioSequences dependency

be9aa29ba25e8ea0449a39a881ad629b09d37651 authored over 2 years ago by Ciarán O'Mara <[email protected]>
Increment version

84aa4cc6a58ab6538709f5e308ddce1a8b0a6833 authored over 2 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'master' into develop

505519d08d017b0170c14b1a3d06e9645145b75c authored over 3 years ago by Ciarán O’Mara <[email protected]>
Merge branch 'hotfix/strand'

c0ba45a8ffc4bfdea2b6d89455a132f61f24e1e3 authored over 3 years ago by Ciarán O’Mara <[email protected]>
Remove`ismissing` check from strand accessor

Fixes #5.

adf203681b55f7a24df3ffb82ac1ea79a4ba5bec authored over 3 years ago by Ciarán O’Mara <[email protected]>
Increment version

619cc79f6782eb4b35472e2c3be3fb98ebb21eea authored over 3 years ago by Ciarán O’Mara <[email protected]>
Merge branch 'master' into develop

f9066d8fe61d8073944fa97d64755b3690f84453 authored over 3 years ago by Ciarán O’Mara <[email protected]>
Merge branch 'release/v0.2.0'

3278e1b73a8071d18d43c64fe52d1ee520275746 authored over 3 years ago by Ciarán O'Mara <[email protected]>
Increment version

f1281dbb35a376f4ff84a456fcd572edf265abaf authored over 3 years ago by Ciarán O’Mara <[email protected]>
Fix parser ambiguity

d2614d538bdc3ecbb5f602b54e15370e49074593 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
Merge branch 'feature/transcodingstreams' into develop

3e56dedb5b5ba247c3e3e06d3ccc32e36391c245 authored over 3 years ago by Ciarán O’Mara <[email protected]>
In-place iteration

d3a1327a74ca83b0396c4cc69534dff15199c935 authored over 3 years ago by Ciarán O’Mara <[email protected]>
Index!

1c86cb30e7a7a634e12f705fe7a788caaddbc024 authored over 3 years ago by Ciarán O’Mara <[email protected]>
Read!

64a160f9f23ae5f53a5682dd82126fd0dda5786a authored over 3 years ago by Ciarán O’Mara <[email protected]>
Distinguish and use BioCore accessors in tests

da0c51e9f7869fc532ae62083020e329a564fcde authored over 3 years ago by Ciarán O'Mara <[email protected]>
Eltype

47e12370246aa39832e8778315a311c02a730165 authored over 3 years ago by Ciarán O'Mara <[email protected]>
Use BioGenerics’ Automa.Stream.generate_reader

672c08d4e160c1efa59d601b96a590a1718d400b authored over 3 years ago by Ciarán O'Mara <[email protected]>
Migrate from BioCore to BioGenerics

Basic find and replace.

d905810436b1416d32db61d6ab123052df76468d authored over 3 years ago by Ciarán O'Mara <[email protected]>
Pipe into `eval`

f0218a0f543f2877cf05fd2667993493eb49803a authored over 3 years ago by Ciarán O'Mara <[email protected]>
Align emissions

217f54c2b8cf90074820a63b9a6148cfa409baad authored over 3 years ago by Ciarán O’Mara <[email protected]>
Migrate from BufferedStreams to TranscodingStreams

33114fed41b87293226e4f34f7eeed7d44cdb0c1 authored over 3 years ago by Ciarán O’Mara <[email protected]>
Replace `resize_and_copy!` with `appendfrom!`

eddd420de43976a7ee243f15bb0198928805a2c3 authored over 3 years ago by Ciarán O'Mara <[email protected]>
Use BioGenerics.Automa.State{S}

Finished to filled

67710685c8b950ad56fdb17cf85a944ffc064293 authored over 3 years ago by Ciarán O’Mara <[email protected]>
Merge branch 'master' into develop

5da58eefe837be2bea4f11b3824e53007fdd4dad authored over 3 years ago by Ciarán O’Mara <[email protected]>
Merge branch 'release/v0.1.1'

b0da4b74a0fc8f5abe9ec4d153f3ee4dfbef7cbb authored over 3 years ago by Ciarán O'Mara <[email protected]>
Increment version

768a0094136b8dfd2f531c4c339f9e365e45abf9 authored over 3 years ago by Ciarán O’Mara <[email protected]>
Using before import

54100a66c59dacc3cbfcadba50d3fcacb6e4b1d3 authored over 3 years ago by Ciarán O'Mara <[email protected]>
Remove hardwraps

a20e5b596c87c0372e025368d4d49d56e1a51ed6 authored over 3 years ago by Ciarán O'Mara <[email protected]>
Update CI and documentation for the general registry

f4eee4764d0551bbdbbbc44f61268b062a86b273 authored over 3 years ago by Ciarán O'Mara <[email protected]>
Flatten ifelse

1f53e985d08d88bfe68b64af0ae6c0e9503a1325 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'release/v0.1.0'

909fc5d5faad8eaa90f83aba28cbdaf32d22d298 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'master' into develop

d7892ed00d46b3dd1f75b1397869ad730589aeb5 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Update project status

49826145b73714fcb1818356ec32966daf00cc33 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Documentation

- API autodocs.
- Logo.
- Badges.

14c676d71471c5bff41f82db8969acd39b423580 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Documentation Roundup

704aee03ee953285febffa9420820159b7590837 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Add funding

f1481b663902d34a73e4750a5d3633a20e44d998 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Add TagBot workflow

91de504d399826c51ed176433355a332df06ddcc authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Add documentation workflow

10319ff117d8fc186d22d7433a96d54ca127ba94 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Use FormatSpecimens

24e4252bea01a84d5e7897e250c460c7f10d7219 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Minimal code adjustments for working separation

- Ignore test/BioFmtSpecimens.
- Update to use GenomicFeatures v2.
- Update to use BioSequences ...

fb033f3143b6140507f8bd995c7ee7aac1f51122 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Continuous Integration

71776631f7893ca9158c2cc7d12311c5cf413568 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Add CompatHelper workflow

8a3e82e05b508ce4c86e62a344cb7ad08b51bf24 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Naive code roundup

13df1f3d9e943c5e63e4a7a0a5daabb82742c28f authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Add .github templates

d721fb9cbb535ed03dcdadd060f6ea0c5bab4f65 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Add original authors

19f2aa48e18880d113a9aeb14427ec8bcc4fa7d3 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Add generated files

76b8d232c4442438fabdff80784fe86ecb3870f9 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Initial commit

df54c5b1ebd83679687fc7270fcb98d86fabee45 authored almost 5 years ago by Ciarán O'Mara <[email protected]>