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github.com/BioJulia/Kmers.jl

In development: Kmer types and methods for julia
https://github.com/BioJulia/Kmers.jl

Correct some small typos in the docs

camilogarciabotero opened this pull request 12 months ago
Breaking changes for v1

jakobnissen opened this pull request 12 months ago
SpacedKmer bug for 2bit sequences

cjprybol opened this issue over 1 year ago
Fix iterator constructor and other failing tests

cjprybol opened this pull request almost 2 years ago
Kmers.jl is unable to comply with `BioSequences.has_interface` as currently implemented

cjprybol opened this issue almost 2 years ago
consider removing kmer/sequence type inference from strings in favor of generalized version in BioSequences

cjprybol opened this issue almost 2 years ago
Add docstrings and update docs

cjprybol opened this pull request almost 2 years ago
Better conversion from 2 to 4 bit nucleic kmers

SabrinaJaye opened this pull request over 2 years ago
Fix hashing

SabrinaJaye opened this issue over 2 years ago
Add Unsafe trait object

jakobnissen opened this pull request over 2 years ago
Resolve ambiguity error Kmer()

jakobnissen opened this pull request over 2 years ago
Add constructors

jakobnissen opened this pull request over 2 years ago
Add translation of kmers

jakobnissen opened this pull request over 2 years ago
Roadmap to release

jakobnissen opened this issue over 2 years ago
Fix minor bugs

jakobnissen opened this pull request over 2 years ago
Small bugfixes

jakobnissen opened this pull request over 2 years ago
Add reverse translation

jakobnissen opened this pull request over 2 years ago
Proposal: Implement reverse translation

jakobnissen opened this issue over 2 years ago
TagBot trigger issue

JuliaTagBot opened this issue over 2 years ago
Proposal: Allow zero-length kmers

jakobnissen opened this issue over 2 years ago
Kmer Slicing

SabrinaJaye opened this pull request over 2 years ago
Various small issues

jakobnissen opened this issue over 2 years ago
Missing contructors

jakobnissen opened this issue over 2 years ago
Should EveryKmer and SpacedKmers be merged?

SabrinaJaye opened this issue over 2 years ago
Micro-optimise the hell out of this package.

SabrinaJaye opened this issue almost 3 years ago
Should gaps be permitted in Kmers?

SabrinaJaye opened this issue almost 3 years ago
CompatHelper: add new compat entry for BioSequences at version 2, (keep existing compat)

github-actions[bot] opened this pull request about 3 years ago
Implement translate for codons

jakobnissen opened this issue over 3 years ago
Merge code for Kmer type from BioSequences to this package

SabrinaJaye opened this pull request over 3 years ago
⚠️ Is this package still maintained? ⚠️

jakobnissen opened this issue almost 4 years ago
Contributing files rollout

SabrinaJaye opened this pull request over 6 years ago
WIP: Foundational code from Bio.jl

kdm9 opened this pull request over 7 years ago
Implement a Cuckoo filter

kdm9 opened this issue over 7 years ago
Implement a Counting Quotient Filter

kdm9 opened this issue over 7 years ago
Added kmer types and aliases.

SabrinaJaye opened this pull request over 7 years ago
Short and/or long k-mer types.

bicycle1885 opened this issue over 7 years ago