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github.com/BioJulia/Kmers.jl

In development: Kmer types and methods for julia
https://github.com/BioJulia/Kmers.jl

Fix typo in README.md

jonathanBieler opened this pull request about 1 month ago
Update to the newer BioJulia issue/PR templates

jakobnissen opened this pull request about 1 month ago
Make unsafe_shift_from(::Copyable) use whole chunks

jakobnissen opened this pull request about 1 month ago
Copy chunks of encoding instead of individual symbols

jakobnissen opened this issue about 1 month ago
Build documentation

jakobnissen opened this pull request about 1 month ago
Correct some small typos in the docs

camilogarciabotero opened this pull request about 1 year ago
Breaking changes for v1

jakobnissen opened this pull request about 1 year ago
SpacedKmer bug for 2bit sequences

cjprybol opened this issue over 1 year ago
Fix iterator constructor and other failing tests

cjprybol opened this pull request almost 2 years ago
Kmers.jl is unable to comply with `BioSequences.has_interface` as currently implemented

cjprybol opened this issue almost 2 years ago
consider removing kmer/sequence type inference from strings in favor of generalized version in BioSequences

cjprybol opened this issue almost 2 years ago
Add docstrings and update docs

cjprybol opened this pull request almost 2 years ago
Better conversion from 2 to 4 bit nucleic kmers

TransGirlCodes opened this pull request over 2 years ago
Fix hashing

TransGirlCodes opened this issue over 2 years ago
Add Unsafe trait object

jakobnissen opened this pull request over 2 years ago
Resolve ambiguity error Kmer()

jakobnissen opened this pull request over 2 years ago
Add constructors

jakobnissen opened this pull request over 2 years ago
Add translation of kmers

jakobnissen opened this pull request over 2 years ago
Roadmap to release

jakobnissen opened this issue over 2 years ago
Fix minor bugs

jakobnissen opened this pull request over 2 years ago
Small bugfixes

jakobnissen opened this pull request over 2 years ago
Add reverse translation

jakobnissen opened this pull request over 2 years ago
Proposal: Implement reverse translation

jakobnissen opened this issue over 2 years ago
TagBot trigger issue

JuliaTagBot opened this issue over 2 years ago
Proposal: Allow zero-length kmers

jakobnissen opened this issue over 2 years ago
Kmer Slicing

SabrinaJaye opened this pull request over 2 years ago
Various small issues

jakobnissen opened this issue over 2 years ago
Missing contructors

jakobnissen opened this issue over 2 years ago
Should EveryKmer and SpacedKmers be merged?

TransGirlCodes opened this issue over 2 years ago
Micro-optimise the hell out of this package.

TransGirlCodes opened this issue about 3 years ago
Should gaps be permitted in Kmers?

SabrinaJaye opened this issue about 3 years ago
CompatHelper: add new compat entry for BioSequences at version 2, (keep existing compat)

github-actions[bot] opened this pull request over 3 years ago
Implement translate for codons

jakobnissen opened this issue over 3 years ago
Merge code for Kmer type from BioSequences to this package

SabrinaJaye opened this pull request over 3 years ago
⚠️ Is this package still maintained? ⚠️

jakobnissen opened this issue almost 4 years ago
Contributing files rollout

SabrinaJaye opened this pull request almost 7 years ago
WIP: Foundational code from Bio.jl

kdm9 opened this pull request over 7 years ago
Implement a Cuckoo filter

kdm9 opened this issue over 7 years ago
Implement a Counting Quotient Filter

kdm9 opened this issue over 7 years ago
Added kmer types and aliases.

SabrinaJaye opened this pull request over 7 years ago
Short and/or long k-mer types.

bicycle1885 opened this issue over 7 years ago