github.com/BioJulia/BioServices.jl commits | Ecosyste.ms: OpenCollective

Merge pull request #44 from BioJulia/kescobo-patch-1

Release for expanding HTTP compat

dabf2eb6c6423347cd45780c4ad63396984c50c0 authored almost 2 years ago

fix outdated efetch tests

70e65df03b9ca006a82730cffd286ecbb3dff261 authored almost 2 years ago

Release for expanding HTTP compat

7e33a238557bee2eff96a0b08488c4c98cf8ec67 authored almost 2 years ago

Support HTTP.jl 1.0 (#43)

ec331bb3c4340573c6c4ca4f195f5e714c83990d authored over 2 years ago

Update CHANGELOG.md

af0868519a81124a33a8172f1996378bcb2d2bc3 authored almost 4 years ago

Update CHANGELOG.md

42fe4ac8cb4c193d6be523a56dfb540f61a0ec03 authored almost 4 years ago

WIP: Add EMBL-EBI Proteins REST API (#37)

* Implemented proteins and features calls, renamed module

* Added EBIProteins REST API

21a5a45470eef4a9e495e0ef27e0f750639837f8 authored almost 4 years ago

update license links (#41)

c6fff96a32987cf5b13a509424b78d2f275359b2 authored almost 4 years ago

close #31. docs for xmldict and lightxml (#33)

de95593d50a47f8beaac12fe6c4d5fff7d56df0b authored almost 4 years ago

Updated documentation links (#39)

a5fd297ba1f574a170601d42f2b3f0a068e48a30 authored almost 4 years ago

Modernize docs and CI (#36)

* setup github actions, remove travis, appveyor

* cleanup docs code

* bump major version -...

436f095b01370e2911d53a13c6abc694ccd6fe17 authored almost 4 years ago

Merge pull request #28 from ibacher/fix_docs

Updates to :crossed_fingers: fix the documentation build

95279e0b0d5347a0dab9357f568dccce196be548 authored over 5 years ago

Updates to :crossed_fingers: fix the documentation build

c0aa7841fdefae7786192f4aabec73aed2dd6473 authored over 5 years ago

Merge pull request #26 from ibacher/ib/retry_429

Retry responses if we've hit the API limit

cac1196f62c11a8abc24f65d2ec345d53f3fc6e7 authored over 5 years ago

Merge pull request #27 from mimame/update_eutils_manual

Update EUtils manual

8f9fee63a95a704e48cecf2e502b30538557122f authored over 5 years ago

Update EUtils manual

c2311a73b8608848eb63945679c5bc9d52af85e4 authored over 5 years ago

Add handling for HTTP 429 responses

This goes some way towards addressing #14

e3fba986b7cbbd2ebf9a31bce5d2dcae07f381e4 authored over 5 years ago

Update CHANGELOG.md

54a2e3e19cf323538cff1bdfa61783a6f80979ea authored about 6 years ago

Merge pull request #24 from BioJulia/mcmcgrath13-master

Fix tests - continue #23

f9297535519deb8ea81f722b445cde3e2f4af838 authored about 6 years ago

add 'retry_non_indempotent=true' to http requests

b9600ce859c60d7a7d6c948daa8945e320395f63 authored about 6 years ago

Merge pull request #1 from mcmcgrath13/test_fix

Test fix

a98792ffda99f75eee3c221a28a9817114e88d2c authored about 6 years ago

added sleeps, project.toml, fixed post with workaround

d4597240bfe43e19edab238f473b4f351b236589 authored about 6 years ago

Merge pull request #20 from BioJulia/fix-eutils-http-body

Bugfix for #19

d09d6ce18817d1e41c577256174ca979bf116916 authored over 6 years ago

Updates to change log

089dae7faa801ef996dcf9a7c305059284082066 authored over 6 years ago

Remove .toml files

0a4f0ecebcd4b175f246ee30cf413f3107d0a071 authored over 6 years ago

fix capitalization of xml element

94162c7982b12c854e3c69173bf18c9c1143f12c authored over 6 years ago

update body part of HTTP post to use correct tag

Also added test for longer efetch

242123c6ed346df63b7db010d47e9a821bb8bb7c authored over 6 years ago

Merge pull request #18 from fernandogelin/master

Adds support for Julia 0.7/1.0

cb25daf0c02f8a1b3db8348f877069155fb0439a authored over 6 years ago

removed commented lines from travis

24c74a3ae3c0898ae434957bd0d2edff1dc3d67c authored over 6 years ago

addressed pr changes requested

c12a1127e23cceb452853f5d3b23f085c62ae35b authored over 6 years ago

updates CHANGELOG

e4fd7efc10cc81439837e2e2fb8252a4f7aebf0f authored over 6 years ago

changes travis

a59b3c3996c84789dbf9a45df68f0331725cedc1 authored over 6 years ago

upgrades packages to julia v1.0

6e2bb48a1ca2842547f5ea9082b1881c448a4e60 authored over 6 years ago

updates julia version on README

44dc7229cafe5913749795de629893d3a9848cb3 authored over 6 years ago

updates julia version on README

de68e2b8b6e51d88ba364b95f69eb52e5647abf4 authored over 6 years ago

adds Dates to dependencies

5fe5c2d466609d035459c2ffc8b0c0559a4b07de authored over 6 years ago

fixes missing comma, removes 0.6 from travis

d9ff52f50bd18afd462df1256d03892457b517f1 authored over 6 years ago

changes for v0.7 in UMLS module

a7aadad4bc87a32f694f4eb16177d1432d3389a5 authored over 6 years ago

updates travis

e4d42475186c34ea8490944c69e5e47b85a2046c authored over 6 years ago

changes travis to julia v0.7

bb7fba677e8af163b2c230a0a66da8131f4df67f authored over 6 years ago

makes changes for Julia v0.7

3d834c54788b43addc02d2f959eec5bddab029f2 authored over 6 years ago

Fix a minor error in the README.md

75b396fd2b3420208840dbcc404f3544a7e2f69d authored over 6 years ago

Merge pull request #17 from BioJulia/humans-patch-1

Missing fernandogelin

5c7852d3340c0e9a5cd80dd210630d3252215a34 authored over 6 years ago

Update CHANGELOG.md

bb792cc6d6610634a3877148f9a12712420af7a4 authored over 6 years ago

Missing fernandogelin

d1724966bd2df471fe3f390e0af21f623877f951 authored over 6 years ago

fix CHANGELOG.md [ci skip] (#16)

29bf3d99b8c4f6205c1476d3ac06e6d846676edd authored over 6 years ago

add some touch-ups to GGGnome (#15)

* add some touch-ups to GGGnome (#12)

* prepare for v0.2.0

df68418a2c554ef7248d2a5c79a24d542657117d authored over 6 years ago

add GGGenome (#12)

* add GGGenome

* change function names

* 'query' argument is changed to a required augment...

9e8f000b5ec36500a94b8a0717f90a424e3d6387 authored over 6 years ago

Merge pull request #13 from BioJulia/restore-ezxml

Project file updates

1965128c7e803911565b959dd61c29ffcd9029e9 authored over 6 years ago

add delay between call to not exceen EUtils limit of 3/second

02763eeb7d48d193deac49f4bbb7bcfaa64e7c60 authored over 6 years ago

Update project files

b34f090a97e21a982e3834bc94ffa9d79fcd5a93 authored over 6 years ago

Merge pull request #11 from fernandogelin/master

Change functions to use XMLDict instead of EzXML

d74a3264794ee00a89f3fc75943868c32749736b authored over 6 years ago

updates REQUIRE

bbfa7f80735d757a188cc7816ccbd8a963a34c88 authored over 6 years ago

changes to XMLDict

e4a34278d446876a879b3ea4f7beb8b77c0a887a authored over 6 years ago

Merge pull request #9 from mcmcgrath13/master

Added retry_non_idempotent=true to HTTP post requests for UMLS

2677c7acd8b4302f687dcd6c96a347d8c30eaeb3 authored over 6 years ago

removed unnecessary retry_non_idempotent on get

20d7b499bb6989832589bc5c30a2961c35f82c47 authored over 6 years ago

adding retry_non_idempotent=true to post requests that are actually gets

f4a0db4b83ca607cbd13c53becd5c7dae5ebec27 authored over 6 years ago

Merge pull request #8 from fernandogelin/master

Change functions to use HTTP.jl package instead of deprecated Requests and HttpCommon.

5066442acaf02cfbec74f8dc746ec4df2b4ab675 authored over 6 years ago

incorporated reviewer suggestions

aeb98e270795a6dd20479068ea49322363d35d04 authored over 6 years ago

adds more tests to esearch, espells, einfo, esummary

fa9d9a328edc2cfd46294b62741162dc933de806 authored over 6 years ago

fixes post requests in epost and efetch

f8b615ca2c2aca30a7b614ad0d5b92d6a0af3a3b authored over 6 years ago

:exclamation: removed deprecated http libraries from umls.jl

9a066147f6dd50bb66c86288bcf6f72b6b437f39 authored over 6 years ago

:exclamation: updates eutils tests

c47139451c6a26bf6dae9e9756c673dc9f90e648 authored almost 7 years ago

:exclamation: updated eutils.jl to use HTTP.jl

bd7c18878e3aaedd83efa3630e05fbe40d1d25c6 authored almost 7 years ago

Merge pull request #6 from BioJulia/rollout-contributing

Contributing files rollout

f9c918c91b3f4c0272f8af47d5989750ec8a70b3 authored almost 7 years ago

Rollout file .github/ISSUE_TEMPLATE.md

cd424ce03616e5ca64a9d54203ea47b15eeb87f5 authored almost 7 years ago

Rollout file .github/PULL_REQUEST_TEMPLATE.md

8b6e07629f54616792d1551311762225689b87cc authored almost 7 years ago

Rollout file CODE_OF_CONDUCT.md

3b6982bc323f44d7d511528c6ca6c69185b4f673 authored almost 7 years ago

Rollout file CONTRIBUTING.md

b571a532e1d14dd540b7f623109d171eb7ac86bb authored almost 7 years ago

Add mantainers

8cc43a8bfaaa940d3bf3432e3160bf08750a61ba authored about 7 years ago

Update package installation for new release

90d1a3c2386e305b2bd4ad991fbc9ea826649460 authored about 7 years ago

Merge pull request #4 from bicycle1885/umls-style

add some stylistic touch-ups to UMLS

ca7c21a5c2814ef00ffc214f08c8fa3f9612032b authored about 7 years ago

add some stylistic touch-ups to UMLS

91c789fbc3d74008be8fcab0fef143b26a96a3e2 authored about 7 years ago

Merge pull request #3 from mirestrepo/umls

Add UMLS API

e9ddef6f1b6857bb18eebf8d511c3ffac7b17eab authored about 7 years ago

Incorporate PR suggestions

2503f8b9c0fc24dee3a6f9596be2e1569c65a42d authored about 7 years ago

More in-depth docs

0c5b238dea06e7c47aeb751b06db2a3e44b88a88 authored about 7 years ago

mkdocs: change theme to material, and julia version

832b65919082505286688d555a89806d572a1bac authored about 7 years ago

disable umls test if environment variables are not available

- ENV are not available from forks

aa2aaaf08eca35db002b1d17b9ea970292915464 authored about 7 years ago

Add additional packages to REQUIRE

ee7ad9660c56a1b47ca9ebf5fcef4574d249864f authored about 7 years ago

Add UTS_TGT from tests to gitignore

4002f1744dc64587293c6d844579a7f63a09c370 authored about 7 years ago

Minor typos

129b7da99f4fd66fbf7145fc05b18a0c367bb2b8 authored about 7 years ago

remove and gitignore docs/build dir

ca766f0850491a9b7254f3d3f41825ee4d9e4267 authored about 7 years ago

Add UMLS API, and related tests and docs

46812885c8afc6b6e29c0a7faca706de7a5b222a authored about 7 years ago

Merge pull request #2 from mirestrepo/basic_updates

Updates to README and drop Julia 0.5

ad7d4eb8c539a5192e90216039bd85c5004fea2a authored over 7 years ago

update appveyor for julia 0.6

ed5b08d8d70812f6f53e1a7f650b5edd14184e4b authored over 7 years ago

remove julia build badge, since pkg is not yet registered

7cde12470c684dffc234fdec6cbb0fba40f704eb authored over 7 years ago

update README and travis for 0.6

586c5efeb1dbbbd3be40c1ea37fa658440f7082b authored over 7 years ago

Drop julia 0.5

- Drop support for Julia 0.5
- Fix deprecated warnings

43c83afdad9cb8e8f2ce0b5ba63cd30bf51aad71 authored over 7 years ago

Minor doc edits

03847a6c6319dfdbba36222de51e74879b7c4ef0 authored almost 8 years ago

Edited make

ebcf3b0a0aa41bc9dc2c52f31a10b91b2978a9fb authored almost 8 years ago

Added Requests to the require file.

cb05e2dbbb93f465d550963827489ed25e7f00a6 authored almost 8 years ago

Edited require

0c806057ee7045091e7d53f605b377050bbfa411 authored almost 8 years ago

Create README.md

2b8f180bbcf4d2915b9bf733eb5ceab3594c3e74 authored almost 8 years ago

Added first set of files

05b10936926339cbe0ef297c452713cc60987df8 authored almost 8 years ago

Initial commit

a60650dd07145c5830f13b5a750dafb34ff1f5a2 authored almost 8 years ago