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github.com/BioJulia/GeneticVariation.jl

Datastructures and algorithms for working with genetic variation
https://github.com/BioJulia/GeneticVariation.jl

Fails to parse metadata with hypen in the key

apraga opened this issue almost 2 years ago

GeneticVariation.VCF.Reader does not like output from the gatk tool: funcotator

jackmo375 opened this issue over 2 years ago

multiple allele separated by semicolon in ALT field

marbeno opened this issue about 3 years ago

Cannot install this package

yuehhua opened this issue about 4 years ago

Add Project.toml

rasmushenningsson opened this pull request over 4 years ago

cannot read vcf from Sanger

pfarndt opened this issue over 4 years ago

Add Project.toml

jakobnissen opened this issue over 4 years ago

Make parser unambiguous

jakobnissen opened this issue over 4 years ago

Looping over vcf file 10x slower than reading line by line

biona001 opened this issue over 4 years ago

Looping over a VCF file seems to incur huge memory

biona001 opened this issue almost 5 years ago

BCF.chrom always returns 1

kaskarn opened this issue over 5 years ago

ERROR: LoadError: GeneticVariation.VCF.Reader file format error on line 254 ~>";esv3585"

gtollefson opened this issue almost 6 years ago

LoadError: ArgumentError: Package GeneticVariation does not have Compat in its dependencies

gtollefson opened this issue about 6 years ago

Cannot install the package for Julia 1.0.1

kavir1698 opened this issue about 6 years ago

Cap Documenter.jl to 0.19 on Travis

mortenpi opened this pull request over 6 years ago

1.0 Support

dialvarezs opened this issue over 6 years ago

Fix VCF parsing of files output by GATK

SabrinaJaye opened this pull request over 6 years ago

ERROR: LoadError: GeneticVariation.VCF.Reader file format error - unexpected metainfo line from GATK command line

gtollefson opened this issue over 6 years ago

GeneticVariation.VCF.filter(reader) fails when encounters missing filter

gtollefson opened this issue over 6 years ago

Fix n_samples method for BCF records

SabrinaJaye opened this pull request over 6 years ago

Fix deprecations

femtocleaner[bot] opened this pull request over 6 years ago

Contributing files rollout

SabrinaJaye opened this pull request over 6 years ago

Add avg_mut