github.com/BioJulia/IntervalTrees.jl commits | Ecosyste.ms: OpenCollective

Merge pull request #59 from BioJulia/release/v1.1.0

Release v1.1.0

989941e60b70fd80af15c3edd2c589b92fb4f04d authored over 1 year ago by Ciarán O'Mara <[email protected]>

Simplify codecov step

6d893a8fe31c4234118e37a28d83c8e0e3386985 authored over 1 year ago by Ciarán O'Mara <[email protected]>

Increment version

0911c3983f879fcb9aae4fd9ab33590b5357a008 authored over 1 year ago by Ciarán O'Mara <[email protected]>

Merge pull request #58 from CiaranOMara/hotfix/issue_54

Remove erroneous constructor

2ed8254a6ba0d6480a68193220acbbbc72785db0 authored over 1 year ago by Ciarán O'Mara <[email protected]>

Remove erroneous constructor

cbffec551b93d8c538e5df24055b8eac8b292747 authored over 1 year ago by Ciarán O'Mara <[email protected]>

Remove formatter key-word argument

fd51a17ece16eaeb4b27afba9401a7401751930e authored over 1 year ago by Ciarán O'Mara <[email protected]>

Update Unit Test badges

d102614021eba834f4dc68c1473f5fbb1fe39188 authored over 1 year ago by Ciarán O'Mara <[email protected]>

Add downstream badge

54172c2e9fcb2b005bc16331973629f9063f0fc3 authored over 1 year ago by Ciarán O'Mara <[email protected]>

Improve slack link

2fd5f7a64613ae6164a5b29b33d7117405752af1 authored over 1 year ago by Ciarán O'Mara <[email protected]>

Check documents

c94f5db26acf4129a3baf578d559514afff90f24 authored over 1 year ago by Ciarán O'Mara <[email protected]>

Split CI.yml workflow

339712f7649196dc8f552f903476e816afbd2dbe authored over 1 year ago by Ciarán O'Mara <[email protected]>

Include DocTests in UnitTests

f79f5d601d0bbb6c781f16d3cb9eb805913d59fc authored over 1 year ago by Ciarán O'Mara <[email protected]>

Update TagBot workflow

8e30c75e7a5a2a874f21a47e52cd8cf87a2a7fb3 authored over 1 year ago by Ciarán O'Mara <[email protected]>

Add DOI to readme

d0b4071094e05e4e6db225f6e3ba159c34308606 authored over 1 year ago by Ciarán O'Mara <[email protected]>

Merge pull request #57 from CiaranOMara/hotfix/docs

fa2ab8461328540b2b99c6e819d9a36da425314d authored over 2 years ago by Ciarán O'Mara <[email protected]>

Add Pkg to documentation’s package requirements

4e0cb968b3ad1fc0dfcf0e585bb3eda937d5d293 authored over 2 years ago by Ciarán O'Mara <[email protected]>

Merge pull request #52 from CiaranOMara/feature/ci

- Migrates CI to GitHub workflows
- Adds downstream tests
- Updates readme
- Removes HUMANS.m...

2f6b054902c6dd09d69a9bc57851d9e91b6c9fb4 authored over 2 years ago by Ciarán O'Mara <[email protected]>

Remove change log

8185756a41faced1a97dba1e19d035db1ec08822 authored over 2 years ago by Ciarán O'Mara <[email protected]>

Remove humans

87c57e7fb2e5e738d5916fba18b5110f024d5c5c authored over 2 years ago by Ciarán O'Mara <[email protected]>

Update Project.toml

ad59719613ab8f90052341f25409fa212fa00c61 authored over 2 years ago by Ciarán O'Mara <[email protected]>

Add branch link

fb234cb85f2d85c209211ee0404af56b7e8fb4f5 authored over 2 years ago by Ciarán O'Mara <[email protected]>

Update Install instructions

4b60196a0232409e9a5b7809b0d07859e9b6aede authored over 2 years ago by Ciarán O'Mara <[email protected]>

Add workflow for downstream tests

de1170424cdfd8b62e7f838bbfa44fff5c31c6cf authored over 2 years ago by Ciarán O'Mara <[email protected]>

Add funding

0799de5b3ee473dd8b49d54a03d3348118e48681 authored over 2 years ago by Ciarán O'Mara <[email protected]>

Update contributing section

394b24a66a3aa24a37de2edc3c9c49624a78db82 authored over 2 years ago by Ciarán O'Mara <[email protected]>

Migrate documentation to GitHub workflow

b78210aace5285059cd2911b1ff43dd25819deb6 authored over 2 years ago by Ciarán O'Mara <[email protected]>

Add workflow for Tagbot

a85c91a8bad528f9c1855f9cdad8ab1f7d91cab6 authored over 2 years ago by Ciarán O'Mara <[email protected]>

Update chat links

5f85bcfaaa7c4ee9417ac7a2c8824b93e460c227 authored over 2 years ago by Ciarán O'Mara <[email protected]>

Update status badges

5c8dd7166b753957247bec7e05a2c5d25897bd5c authored over 2 years ago by Ciarán O'Mara <[email protected]>

Update Documenter

ed412f45e4abc9cabb2737c7e478e360a3696f17 authored over 2 years ago by Ciarán O'Mara <[email protected]>

Migrate tests to GitHub workflow

396536bdb7c1b3fbc037a753328c3695cf8ecc09 authored over 2 years ago by Ciarán O'Mara <[email protected]>

Move logo

f3ddfca43d1288fb60fa78a76717e273483b203f authored over 4 years ago by Ciarán O'Mara <[email protected]>

Remove badge style

baef1713666560078eb043e7097d503fe0334290 authored over 4 years ago by Ciarán O'Mara <[email protected]>

Use first and last accessors for downstream flexibility (#53)

* Update .gitignore

* Remove .DS_Stores

* Add Project.toml

UUID matches https://github....

e37edab61568d08141a3e9c25ec55caac21e5aa5 authored over 4 years ago by Ciarán O'Mara <[email protected]>

delete .DS_Store

2f63a6c73b1bf872ab7bccd859e581f548eba2d2 authored over 6 years ago by Kenta Sato <[email protected]>

run CI on Julia 1.0 as well (#45)

ff24f3622ff7a1c7fa65366193ec2cb34daeb6cd authored over 6 years ago by Kenta Sato <[email protected]>

modernize inbounds style (#44)

a45870b2097f4b53cd94dfe7a8c5dcd36457f0d4 authored over 6 years ago by Kenta Sato <[email protected]>

Add LICENSE

a123c23ee7345f980f26948491df76669778091f authored over 6 years ago by Ben J. Ward <[email protected]>

Add HUMANS.md

4dd11f06ad6713cbe10f3b0d97d02864a7826d03 authored over 6 years ago by Ben J. Ward <[email protected]>

Add changelog and change lifecycle badge

667d0ab494dc93e96c0d4355b82af3fcd0ae8749 authored over 6 years ago by Ben J. Ward <[email protected]>

Add project files, and documentation generation

Use Documenter.jl in travis

Add sticker

Add logo.png for documentation

Make git ignore .DN_St...

f7870ccac0690e0996cfa881d23152b1e887e748 authored over 6 years ago by Ben J. Ward <[email protected]>

Fix deprecations (#43)

7b46279b4e3552681ff371530414ddd9f27df942 authored over 6 years ago by Kenta Sato <[email protected]>

Merge pull request #41 from bicycle1885/drop-0.6

9892c527336864ae43d77e02a5e6984cd42b6dcc authored over 6 years ago by Kenta Sato <[email protected]>

do not run Travis Ci on Julia 0.6

c29c219649c709cdb632e6ee2ea1c67cdc8a6c58 authored over 6 years ago by Kenta Sato <[email protected]>

Merge remote-tracking branch 'remotes/origin/version-1.0' into drop-0.6

937d38df0f75b1aa2e298aadba8ba303dcd8998b authored over 6 years ago by Kenta Sato <[email protected]>

Drop julia 0.6

ed63ee7dacb022261c2127ef0c801b4680d5ab48 authored over 6 years ago by Ben J. Ward <[email protected]>

Update README.md

f552262e63c32ae333c8eb7539154104fac4f9db authored over 6 years ago by Ben J. Ward <[email protected]>

Changes pertaining to supporting 0.7 (#37)

* fix README.md

* Fix a bug in firstintersection that can lead to missed intersections.

* ...

65b8d1e2932253cf8269f6249d20fb11284e7a53 authored over 6 years ago by Sambit Kumar Dash <[email protected]>

Contributing files rollout (#38)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

4cfba59110550752673ce350b8f8b2c8e47e0538 authored over 6 years ago by Ben J. Ward <[email protected]>

Inline a couple Base.next methods.

4e609d30911a0658ae743d0e6753b168b9aee805 authored about 7 years ago by Daniel C. Jones <[email protected]>

Fix a bug in firstintersection that can lead to missed intersections.

7c8a5bd6dc399feebe54c45b122b523a442b94f2 authored about 7 years ago by Daniel C. Jones <[email protected]>

Fix a test

57943a0ed5597ae21b4230105948476065279bce authored about 7 years ago by Daniel C. Jones <[email protected]>

fix README.md

3c21c732cab042462e8ba01e22c2f0334e21d220 authored about 7 years ago by Kenta Sato <[email protected]>

Edited readme

82bcd10b79cf83cc1550077a686df176728fbba8 authored about 7 years ago by Ben J. Ward <[email protected]>

Drop julia 0.5 support (#31)

* Changed parametric method syntax

* Minor edit to runtests.jl

* New format for internal n...

044849d3b3776d3d7fcb73729d5adb5f3b616692 authored over 7 years ago by Ben J. Ward <[email protected]>

More precise issorted check.

c5d5d303ad2679ad67c40a379433bb99599e1419 authored over 7 years ago by Daniel C. Jones <[email protected]>

Fix a couple bugs in findfirst.

53619513f954781311f5cb2f22fdf72bd88dffb6 authored over 7 years ago by Daniel C. Jones <[email protected]>

Add optional filter predicates to intersect, and a findfirst function (#28)

* Add findfirst function that takes an optional filter function.

* Add optional filter predic...

9bcb231b70bd961839c773f8fcdfc9213f020b4b authored over 7 years ago by Daniel C. Jones <[email protected]>

fix constructor syntax (#26)

* fix constructor syntax for Julia 0.6

* run TravisCI on Julia 0.6

3a668a1e5dece1ee5f9c9125f5a84c2ac42b3e7f authored over 7 years ago by Kenta Sato (佐藤建太) <[email protected]>

Faster nextintersection! function

18c293c006b1908249e61f6285b154e99b9035a8 authored over 7 years ago by Daniel C. Jones <[email protected]>

A slightly more informed cost estimation.

e1f1f2c2bb5cdca4b1370166c03f016351a9c0e4 authored over 7 years ago by Daniel C. Jones <[email protected]>

Use improper mutating state iterator.

This is 2-4x faster that the proper immutable state iterator.

d1be51670041c776070f447cc0fa8530cc360d6d authored over 7 years ago by Daniel C. Jones <[email protected]>

Store leaf node keys redundantly in contiguous memory. Clean up successive intersection.

a14d8b70d8ea37df4446fb410e9c551d6439f1b1 authored over 7 years ago by Daniel C. Jones <[email protected]>

Use a plain array rather than Slice to store leaf entries.

ec934b3c01352866686908c79c5fbd49f62da480 authored over 7 years ago by Daniel C. Jones <[email protected]>

Don't use isless to compare entries in leaf nodes.

This can be unecessarily slow for intervals that compare on other fields.

6c4adc331db8067df87d82a31d439b0532235f03 authored over 7 years ago by Daniel C. Jones <[email protected]>

update README

1f1bb8b510e508a1f8969f7e0ebde5968ecdbfd6 authored almost 8 years ago by Kenta Sato <[email protected]>

support Julia v0.6 and drop Julia 0.4 (#24)

600a3f9d94aefce06cbe2900fece7f96f8256604 authored almost 8 years ago by Kenta Sato (佐藤建太) <[email protected]>

Added convert/outer constructor method (#23)

1f5b320d5a5260b28c88e4d57c21db8c787a80af authored almost 8 years ago by Ben J. Ward <[email protected]>

Some intersect optimizations. (#22)

Optimizations to intersection

ac0962578bf93bc673986726ddfa6b7cf43de547 authored over 8 years ago by Daniel C. Jones <[email protected]>

some trivial refactoring (#21)

085f48b67856400ad8486da59f840b241f028ead authored over 8 years ago by Kenta Sato (佐藤建太) <[email protected]>

fix iteratorsize check (#20)

22271b5132b086cf911252d5d619357dd90bc6c6 authored over 8 years ago by Kenta Sato (佐藤建太) <[email protected]>

remove Compat.jl depndency (#19)

f97a29a64683fde4627b6fff142c7169ec077a96 authored over 8 years ago by Kenta Sato (佐藤建太) <[email protected]>

run TravisCI on Julia 0.5 (#18)

f4b0e3023f66213f68df210ba81f2cd2f7a43cbe authored over 8 years ago by Kenta Sato (佐藤建太) <[email protected]>

Merge pull request #16 from bicycle1885/tweaks

Precompilation and small tweaks.

cd1acbb348db8faef1ceacfaf9f89af69ca3648c authored over 8 years ago by Kenta Sato (佐藤建太) <[email protected]>

minor stylistic tweaks

d3b59a289f4524288ced911b7bef635d207c668a authored over 8 years ago by Kenta Sato <[email protected]>

turn on precompilation

61f300341c337e3640f3628cc98b10b02dfb6fea authored over 8 years ago by Kenta Sato <[email protected]>

Merge pull request #15 from bicycle1885/modernize

Modernize package

7cd940d2ed0307228c807eb0e34140a7bbb8896e authored over 8 years ago by Kenta Sato (佐藤建太) <[email protected]>

fix syntax of throwing exception

8c3954f0465e1a24486269c5da3248e8157aa4a4 authored over 8 years ago by Kenta Sato <[email protected]>

use Base.Test instead of FactCheck

ecffc4565bc657876796a30d8dbf45afa0096341 authored over 8 years ago by Kenta Sato <[email protected]>

drop Docile dependency

7272525ab0d5af7685aafd054bfeee677d635f62 authored over 8 years ago by Kenta Sato <[email protected]>

implement iteratorsize trait

28abbfc0416370ee9104c6fe33976d4b400848dc authored over 8 years ago by Kenta Sato <[email protected]>

fix a test of slice

916dab35cd78a47eab0d37158f72c9b31e022e1b authored over 8 years ago by Kenta Sato <[email protected]>

require Julia 0.4

5ee0f83f52c823aa0d4bf14593e3665d468e8774 authored over 8 years ago by Kenta Sato <[email protected]>

fix .travis.yml

f4884e0f9428035791584552f803abdc3b55dc68 authored almost 9 years ago by Kenta Sato <[email protected]>

run Travis CI on v0.3

75b4af106015127b32759081de83212a8460220c authored almost 9 years ago by Kenta Sato <[email protected]>

add Compat to REQUIRE

aa9a66bc6e11df627ab417f3c87b980ccd57accb authored almost 9 years ago by Kenta Sato <[email protected]>

Merge pull request #12 from tkelman/patch-1

remove - on julia version in REQUIRE

f24b9ee99f2f6fb5558f43fe52677e49c41478a2 authored almost 9 years ago by Kenta Sato (佐藤建太) <[email protected]>

Merge pull request #13 from bicycle1885/compat-v0.4

suppress deprecated warnings

d86fd98dc8f5bd1d2546f5e8d16681980bef1ab9 authored over 9 years ago by Daniel C. Jones <[email protected]>

suppress deprecated warnings

67b3d9a557ddd0c6c559a6cf87919e53c557ea0b authored over 9 years ago by Kenta Sato <[email protected]>

Enable Codecov.

b1ec7ed888745912191a941e6a7d347e714d0e25 authored over 9 years ago by Daniel Jones <[email protected]>

Allow construction of uninitialized (empty) IntervalIntersectionIterator.

d35a25485e3fe80a185c0e565de9cf1443db2208 authored over 9 years ago by Daniel Jones <[email protected]>

Faster intersection.

e04fe70e981e94e6025ac0314272846a9d95b4d3 authored over 9 years ago by Daniel Jones <[email protected]>

remove - on julia version in REQUIRE

that refers to prereleases of 0.3 and is no longer necessary

51cc7b6687d199bb9ffcf2468724fe6c6ddb53d5 authored over 9 years ago by Tony Kelman <[email protected]>

Update runtests.jl to julia syntax changes.

9137e7d78c309594f49d158e33eeb2a2cdcac820 authored over 9 years ago by Daniel Jones <[email protected]>

Improve type stability of interval tree intersection.

71083596459785e9897697dba369d36b770fd334 authored over 9 years ago by Daniel Jones <[email protected]>

Fix under-specified type.

9b379b0c04ea03391b7ea853916f66810fb49de3 authored over 9 years ago by Daniel Jones <[email protected]>

Some intersection optimization.

272010572a12a22d3a9b6c8b271718153dd16138 authored over 9 years ago by Daniel Jones <[email protected]>

Relax type of bulk insertion constructor.

d9399217b24a5b97e2bb98daef218cbb661d4fae authored over 9 years ago by Daniel Jones <[email protected]>

Fix cost estimation in intersect.

bdd9ed1d9f3024f55c3930a763a765702a1725f4 authored over 9 years ago by Daniel Jones <[email protected]>

Respect io in show.

9f42d72b531a44e490b1b971f6bec5748e7c2d25 authored over 9 years ago by Daniel Jones <[email protected]>