github.com/BioJulia/BioStructures.jl issues | Ecosyste.ms: OpenCollective

parse query on Select object creation

lmiq opened this pull request about 1 month ago

Bump codecov/codecov-action from 4 to 5

dependabot[bot] opened this pull request about 2 months ago

memory usage when reading (really large) files

lmiq opened this issue about 2 months ago

CompatHelper: bump compat for MetaGraphs in [weakdeps] to 0.8, (keep existing compat)

github-actions[bot] opened this pull request 2 months ago

biojulep: iterators or fold for structures

timholy opened this issue 4 months ago

Add recursive copy for structures

timholy opened this pull request 5 months ago

3-vector for coordinates?

timholy opened this issue 5 months ago

Concrete fields for `Transformation`

timholy opened this pull request 5 months ago

fix compat note

lmiq opened this pull request 7 months ago

selection syntax

lmiq opened this pull request 7 months ago

fix typo: run_strude -> run_stride

lmiq opened this pull request 7 months ago

Speed up parsing of PDB line

timholy opened this pull request 7 months ago

x, y, z seem too generic to export

timholy opened this issue 7 months ago

failing to read PDB files generated by VMD

lmiq opened this issue 7 months ago

Precompile `read(filename, PDB)`

timholy opened this pull request 8 months ago

Bump julia-actions/cache from 1 to 2

dependabot[bot] opened this pull request 8 months ago

Feature suggestion: support BinaryCIF file format

marcom opened this issue 11 months ago

Strip whitespaces from atom/element names

babaid opened this issue about 1 year ago

add secondary structure Information

shuuul opened this pull request over 1 year ago

Add secondary structure prediction.

shuuul opened this pull request over 1 year ago

export fixlists!

shuuul opened this issue over 1 year ago

MMCIF reading error

ivanpmartell opened this issue over 1 year ago

Update BioAlignments and BioSequences compat. Change LongAminoAcidSeq to LongSequence{AminoAcidAlphabet}

kool7d opened this pull request almost 2 years ago

convert pdb to mol

Nick-Mul opened this issue about 2 years ago

Fix Kabsch Algorithm to Prevent Reflections

nhz2 opened this pull request almost 3 years ago

CompatHelper: bump compat for BioSequences to 3, (keep existing compat)

github-actions[bot] opened this pull request almost 3 years ago

Allow chain id to be assigned with chainid!()

gusennan opened this pull request about 3 years ago

CompatHelper: bump compat for MetaGraphs to 0.7, (keep existing compat)

github-actions[bot] opened this pull request about 3 years ago

Secondary Structure Information

emrekuecuek opened this issue over 3 years ago

Multiple selection and Merge Selection

Wang-Lin-boop opened this issue over 3 years ago

CompatHelper: bump compat for "BioSymbols" to "5"

github-actions[bot] opened this pull request over 3 years ago

CompatHelper: bump compat for "DataFrames" to "1.0"

github-actions[bot] opened this pull request over 3 years ago

CompatHelper: bump compat for "DataFrames" to "0.22"

github-actions[bot] opened this pull request about 4 years ago

Add readmultimmcif, writemultimmcif functions

marcom opened this pull request over 4 years ago

Tab completion in the REPL for MMCIFDict and MMTFDict

marcom opened this pull request over 4 years ago

Add ProteinStructure constructors from MMCIFDict and MMTFDict

marcom opened this pull request over 4 years ago

Add MMCIF reading and writing with gzip compression

marcom opened this pull request over 4 years ago

Add get(mmcif, key, default) method for MMCIFDict.

marcom opened this pull request over 4 years ago

MMCIF reader parsing mistakes, some keys are missing / corrupted

marcom opened this issue over 4 years ago

Suggestion: Make structural elements mutable

amaurypm opened this issue over 4 years ago

CompatHelper: bump compat for "BioAlignments" to "2.0"