Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/BioJulia/BioStructures.jl

A Julia package to read, write and manipulate macromolecular structures
https://github.com/BioJulia/BioStructures.jl

export collect, fix visualisation example

c077b7fd1dca160583113d91fe0c12d99ceaca15 authored over 4 years ago by Joe Greener <[email protected]>
docstrings for extended functions

abc9bd4a13a7e85c8c65cb7f83e81f552561d040 authored over 4 years ago by Joe Greener <[email protected]>
combine identical functions

73d98fba3f7d897d9d8535d9df94350cab62c69c authored over 4 years ago by Joe Greener <[email protected]>
docstrings have single leading line

17f3eee072058b7d1d7b89c52741dea86b0b8581 authored over 4 years ago by Joe Greener <[email protected]>
ref tags in docs, other Bio3DView example

252184c07d5f08b578243a80f755520ef70ebb73 authored over 4 years ago by Joe Greener <[email protected]>
ref tags in docs, try embedding Bio3DView

73d3d35e3b142d9f6a8901f08eb2186c1f923329 authored over 4 years ago by Joe Greener <[email protected]>
import to using

e6401502b8e33196594881c7e16e937cd071ea54 authored over 4 years ago by Joe Greener <[email protected]>
re-order API autodocs

2f973cc5f61add27d23498caacaac16bcaf9dc96 authored over 4 years ago by Joe Greener <[email protected]>
API section in docs

83064ffeaf0684a55eb228af90aadaa9ec9b97fe authored over 4 years ago by Joe Greener <[email protected]>
related software in docs

613281da71479ba64c7b03f53a7a2653d24f9e74 authored over 4 years ago by Joe Greener <[email protected]>
remove readpdb

fbdd7ff50bc8dc70a2e22cd9a06bab8c3af270c3 authored over 4 years ago by Joe Greener <[email protected]>
kwargs file_format -> format and pdb_dir -> dir

702f96e550e214fa5cd92a6b5d61d2f95582a460 authored over 4 years ago by Joe Greener <[email protected]>
bump version, update news

aebc0f828e1a976cfaf319f6756775324bccc739 authored over 4 years ago by Joe Greener <[email protected]>
compat bounds for RecipesBase

b50ceee76ac77645d8b878e7dfaa7d887bfd060e authored almost 5 years ago by Joe Greener <[email protected]>
CompatHelper: bump compat for "CodecZlib" to "0.7" (#18)

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

f501b3bea35f4bcab34ed72379244ed8027fe2b1 authored almost 5 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Create CompatHelper.yml

ba20dcc5199fc8b766e060a0aaf830789a642f67 authored almost 5 years ago by Joe Greener <[email protected]>
test on Julia 1.4, tag release

9d4a1a2a70178092ef4a6ffab3b37abe481cd134 authored almost 5 years ago by Joe Greener <[email protected]>
Recipesbase compat (#16)

50a727faa7173c4be584ca731fded9b2d9e1eed3 authored almost 5 years ago by Michael Krabbe Borregaard <[email protected]>
don't strip space unless required to

65e9e4c7ab1988639e8f7843c90c2a7e228231b2 authored almost 5 years ago by Joe Greener <[email protected]>
speed up dihedral angle calculation

284963fb334e90a056a9874bda4675e93db4ec53 authored almost 5 years ago by Joe Greener <[email protected]>
speed up sequence extraction

314ac2bc474a99483dedb453ee11a7be4afbb4e4 authored almost 5 years ago by Joe Greener <[email protected]>
speed up defaultmodel

bcdf935ea84e10fda305e78cda1b647cab20e88c authored almost 5 years ago by Joe Greener <[email protected]>
more benchmarks

67b238de20ce22bf2da9f683bee099d3f431b5a9 authored almost 5 years ago by Joe Greener <[email protected]>
separate collect functions for speed

04931333559fd37087f92267cbb1840883613863 authored almost 5 years ago by Joe Greener <[email protected]>
speed up mmCIF read/write

8d91f1b7affec7306d3004b9aaebfc62cec7d923 authored almost 5 years ago by Joe Greener <[email protected]>
bump version to fix docs build

615a0d0833511a7587893e1aa3cf2f19a98c4b9d authored almost 5 years ago by Joe Greener <[email protected]>
fix doc build

767f3d7e9fdb4e5d2a15c4a9297a2d30e8721970 authored almost 5 years ago by Joe Greener <[email protected]>
test on Julia 1.3

cd83050764cb985567a991708305a187652d7e05 authored almost 5 years ago by Joe Greener <[email protected]>
correct error type thrown

d62769ddceb6c88c69d5d6dadd255d12c5a09d00 authored almost 5 years ago by Joe Greener <[email protected]>
fix write function interpolation

62a2fab234aa1c2f27fbb64afe8649be58706828 authored almost 5 years ago by Joe Greener <[email protected]>
benchmark suite

feac3012c50defea4c54e1472f3bcabfce060133 authored almost 5 years ago by Joe Greener <[email protected]>
update news, bump version

99dd1d7fbdb16ce7661e894a27c221a146aafa55 authored almost 5 years ago by Joe Greener <[email protected]>
suggest mmCIF/MMTF on PDB download fail

a021cf0d1452ffa9582ad92d2617d53e7b5405e0 authored almost 5 years ago by Joe Greener <[email protected]>
allow writing of empty containers

c98ec2ad2a2642dd7eab3d34de123abd7d4ae814 authored almost 5 years ago by Joe Greener <[email protected]>
remove redundant writepdb method

7cdf3dff49e10800e7d9ed56397f97619f254021 authored almost 5 years ago by Joe Greener <[email protected]>
remove redundant writemmcif method

00bb860a07f058564a168ad3e1f9a68ac1864147 authored almost 5 years ago by Joe Greener <[email protected]>
restrict downloadable types

d4a2146c0df1a980bb50c6ff2612053a5d738541 authored almost 5 years ago by Joe Greener <[email protected]>
remove double line breaks

4101b459bb607e734cfb245f161d0b2676219664 authored almost 5 years ago by Joe Greener <[email protected]>
MMTF docs

57c23716bf4775a6cadbc79963a447974b694338 authored almost 5 years ago by Joe Greener <[email protected]>
Examples as separate docs section

d827e4e3892aa545388db2909b464e8e647851d2 authored almost 5 years ago by Joe Greener <[email protected]>
switch writemmtf to atom list loop

25d95192ccc600efb100167a089c8f844004a626 authored almost 5 years ago by Joe Greener <[email protected]>
remove dots from pdbextension

9787bf66c160f208958bddf8cebb573bcc6c9e95 authored almost 5 years ago by Joe Greener <[email protected]>
MMTF tests, generatechainid

a8f0497c5b42702f98ba1ae555068c2161821b28 authored almost 5 years ago by Joe Greener <[email protected]>
expand_disordered tests and docs

1de8cb141c135984375d4ec0a52eeebc38e9ac71 authored about 5 years ago by Joe Greener <[email protected]>
expand_disorder flag to unroll containers

74f971d98a9d033245cae3a4db37d5ca9a5ef4df authored about 5 years ago by Joe Greener <[email protected]>
allow groups with the same name, record metadata

37089d405e3a038ab34e03acb920caca923e0e0f authored about 5 years ago by Joe Greener <[email protected]>
separate entities, correct chain number, sequences

3e20604af61ac9c77d2522911959845be1a49d47 authored about 5 years ago by Joe Greener <[email protected]>
require MMTF

ea19b9ddc8d5252122b266713336d6fa0ae679d4 authored about 5 years ago by Joe Greener <[email protected]>
transfer of code from old mmtf-struc branch

8ca31c6007bd17b4d368a5891b560bd89aeb25ca authored about 5 years ago by Joe Greener <[email protected]>
bump version

e851ea28fdbf1cc6c60ffaf89a4ef0a39403da74 authored about 5 years ago by Joe Greener <[email protected]>
update news

19a15252f6c897a98896222848a11832a371b6df authored about 5 years ago by Joe Greener <[email protected]>
no indices constructor for Transformation

0d05878886c3617e1330aff3fe05ba9723e63a6a authored about 5 years ago by Joe Greener <[email protected]>
superimposition tests, atol for isapprox

c9dbe90c4502b6ba61a2772a476d385e1a6a751a authored about 5 years ago by Joe Greener <[email protected]>
superimpose tests

2ce7c195402325824ee077ff599ef51883677f92 authored about 5 years ago by Joe Greener <[email protected]>
shortcut superimpose for identical sequences

d14e5101221d62246d79f2d4a787000e2d3113a2 authored about 5 years ago by Joe Greener <[email protected]>
allselector, loosen version bounds

6eea016b32dbc9a4264cbade90e9c619e3214add authored about 5 years ago by Joe Greener <[email protected]>
docs typo, transformation docs

83242e928b07d42da4b8d7ccefdef1d2d1b6a33c authored about 5 years ago by Joe Greener <[email protected]>
compat version bounds

2614bab8f441632f54cae6f376bf3fe2ae59321e authored about 5 years ago by Joe Greener <[email protected]>
superimposition tests

fb319c97bf050f6375eedbcd1ae6f11bb7e387ca authored about 5 years ago by Joe Greener <[email protected]>
add O to backbone atoms, superimposition docs

2d116f210bd0e5a12e42a32efdebffa3a8036b31 authored about 5 years ago by Joe Greener <[email protected]>
displacements does superimposition

ccc28589f48994956d7111a86a50ffb158a5bdc9 authored about 5 years ago by Joe Greener <[email protected]>
aligned indices as part of Transformation

faa5df39bc628611120b8cf7ff2bdde6310ee8df authored about 5 years ago by Joe Greener <[email protected]>
rename variables

1c90fc686a31a58827e068c9dc8d3c71f398bb7d authored about 5 years ago by Joe Greener <[email protected]>
RMSD superimposes

1c6a22c3b1608f9f71366f5b7c60f3bc91d6985c authored about 5 years ago by Joe Greener <[email protected]>
Transformation struct and docstrings

bd96eb1d0290781f5dde6051e9033654627ec4ea authored about 5 years ago by Joe Greener <[email protected]>
use Greek alpha and beta

ab91a30ef62ff84bab3e1c15c2f6343a67445d2a authored about 5 years ago by Joe Greener <[email protected]>
abstract type parameter

9095038533a48711ec43fdc22160d9f84d16216a authored about 5 years ago by Joe Greener <[email protected]>
superimpose structural elements

9fe04f6649ace8fa0a40662c5b0509e6ee74cb9a authored about 5 years ago by Joe Greener <[email protected]>
applytransform

3f608b78c9d772a8799386d53458eff291213d35 authored about 5 years ago by Joe Greener <[email protected]>
update news, bump version

9a7d3c2d2dda9c31db47b9bea037edd4acda5c1a authored about 5 years ago by Joe Greener <[email protected]>
DataFrame tests

e372b5de1a4bc602f37e3077c36e1cb05ce0b45d authored about 5 years ago by Joe Greener <[email protected]>
DataFrame constructor and docs

e22900c860b2da818d632231a387cc231de0b285 authored about 5 years ago by Joe Greener <[email protected]>
separate functions for isdisordered

8b50df70ec95bfc0074c7a06bc67dbd47b35e3ab authored about 5 years ago by Joe Greener <[email protected]>
disambiguate variable name

66b3039562c29f843f708bec2ce5332822e1e12c authored about 5 years ago by Joe Greener <[email protected]>
extend pairalign function

bd14786bd06aca4583d25f0bafb9bfa0beb11f49 authored about 5 years ago by Joe Greener <[email protected]>
use type parameters

ec120d8ec03c4f9f3bfcd9558deb24b4be0e87a7 authored about 5 years ago by Joe Greener <[email protected]>
sequence constructor can take any element

eb73ae7990c48d28a253c596ba36648c029affc3 authored about 5 years ago by Joe Greener <[email protected]>
gaps kwarg in sequence constructor

0f795339c02e780dde64ce7a714760d7dfad7d1e authored about 5 years ago by Joe Greener <[email protected]>
docs typo

d94a83ad551a7d38a32677382680e3e794eaf267 authored over 5 years ago by Joe Greener <[email protected]>
MetaGraph for contacting elements

9cf8ab000f59378597c49926470742964dc163fb authored over 5 years ago by Joe Greener <[email protected]>
spaces round operators

34c1143ef103dd3fe3241f12b06a67881ecad47a authored over 5 years ago by Joe Greener <[email protected]>
remove redundant unions

ea39dfb147f7077af8a52e849731438b4c917411 authored over 5 years ago by Joe Greener <[email protected]>
docs example with NearestNeighbors.jl

88508a07aeb6a4d2fd755adb6d596083963799f6 authored over 5 years ago by Joe Greener <[email protected]>
update news

c4bd58cc50c4c4b9a7a448aa69a30fca2b2e7438 authored over 5 years ago by Joe Greener <[email protected]>
bump version

216c13037d880d9d11ed5c04dcce02dad29b9ce4 authored over 5 years ago by Joe Greener <[email protected]>
remove argument tables from docs

0c2aaf81c96c2da4a727f32b812d78d6b09bd2f5 authored over 5 years ago by Joe Greener <[email protected]>
correct text in docstring

dc02033dfff6efece0401708a8269a2c9206560f authored over 5 years ago by Joe Greener <[email protected]>
don't sort during collect functions

b00e84fbf352658ba6cb7e636899d7eed8449c75 authored over 5 years ago by Joe Greener <[email protected]>
add sort to docs

05bd27322de7ed15eb36d7334f86a967040d366e authored over 5 years ago by Joe Greener <[email protected]>
correct function signatures

1973185f7979a530ff460615d88895b2735104fb authored over 5 years ago by Joe Greener <[email protected]>
speedup resnameselector

74905e12fd4b846fbf39c6f296f072a38e562fbc authored over 5 years ago by Joe Greener <[email protected]>
speedup residue iteration

2a68c45676a1c816161ab321884db6449265f7c4 authored over 5 years ago by Joe Greener <[email protected]>
document a couple more functions

2db4edc42815479a635adc45be97898b8c0d03c5 authored over 5 years ago by Joe Greener <[email protected]>
docs typo fix

bec29149944b6a54b3f51520e470bac193f91e66 authored over 5 years ago by Joe Greener <[email protected]>
mmCIF data tag is an array, change dict typing

797f3b61d6a33ed910544651630884344e69c60e authored over 5 years ago by Joe Greener <[email protected]>
docs output fix

a8b4d28fddbd792a9d938d42d5ede8526fd34685 authored over 5 years ago by Joe Greener <[email protected]>
switch CI testing

d22ce6cad00977766f12751282da245eea8fa957 authored over 5 years ago by Joe Greener <[email protected]>
mmCIF reader always returns arrays

254c89ee4e0616fe8b1b5efbb7aa2c32166c859b authored over 5 years ago by Joe Greener <[email protected]>
protein-protein interface example

714740af1c11b530ddfe4218e2ba1e3d3259440c authored over 5 years ago by Joe Greener <[email protected]>
skip online tests on Linux CI

67a924341b8fac36ca8754ca95fc994664a84f31 authored over 5 years ago by Joe Greener <[email protected]>