github.com/astropy/specreduce commits | Ecosyste.ms: OpenCollective

Added image parsers to all classes that take images

Quantity arrays are now acceptable inputs. After parsing, the
attribute is now of type instead ...

4b73bc1ba307e539f511f634e563cdafdcc89dc4 authored about 2 years ago by ojustino <[email protected]>

Better handled Spectrum1D images across classes

bda741f8d348fff3d275845cd07d7ede2cf26676 authored about 2 years ago by ojustino <[email protected]>

Merge pull request #128 from ojustino/poly-trace

Introducing polynomial tracing

2a63e7d2a132b0afc9d9d1c8b4e3aa386f0ff08a authored about 2 years ago by ojustino <[email protected]>

Addressed more review comments

02231cf673d9e400da4572dcd89dc992cc2ffac6 authored about 2 years ago by ojustino <[email protected]>

Addressed review comments

704ed1533b85d448014511bd932d6cc74b5e61a5 authored about 2 years ago by ojustino <[email protected]>

Resolved sphinx build warning

756e76a56a4d72c398183d480132d0ae58da0c48 authored about 2 years ago by ojustino <[email protected]>

Removed specific PolyTrace implementation

cf5316a8ff0460be5f4b6f9a7edc6f998180f33d authored about 2 years ago by ojustino <[email protected]>

Continued updating example notebooks

81cd9099b31caa9d0e3edc7e7df114708a4ebad6 authored about 2 years ago by ojustino <[email protected]>

Changed some FitTrace default argument values

f4af51df83f7e13a3c5548eac8801f2ae5f67bfd authored about 2 years ago by ojustino <[email protected]>

Exposed fitted trace parameters as attribute

5fc60200919387dbd8a3760fd692fe7c46b6e7b4 authored about 2 years ago by ojustino <[email protected]>

Added tests for FitTrace's trace_models

51a9f49f905c8b0563600a10198fc31ac8905c51 authored about 2 years ago by ojustino <[email protected]>

Updated changelog

e1f06392b94d17e6544c72a201945d6c63a409a9 authored about 2 years ago by ojustino <[email protected]>

Deprecate KosmosTrace name for FitTrace

6632cc6cdb0e8f5fd1e7b9d67c1211cedc1adc63 authored about 2 years ago by ojustino <[email protected]>

Changed KosmosTrace to AutoTrace; added poly case

f218fdefc7450479031a04718fd02009bdabfc28 authored about 2 years ago by ojustino <[email protected]>

Remade PolyTrace to take bin instead of bin_size

fe33dc4537da68581dac5a5e0d67f320d55bb116 authored about 2 years ago by ojustino <[email protected]>

Created PolyTrace class

1536c5b383b1949320081fcc25b86252ca29f021 authored about 2 years ago by ojustino <[email protected]>

Merge pull request #146 from kecnry/bg-single-trace

BUG: fix passing single Trace object to Background

67b6b8b82e546b5ad4881b1fd39cdf67a1f4c93f authored about 2 years ago by Kyle Conroy <[email protected]>

fix passing single Trace object to Background

* Background(image, trace, width) used to expect trace to be an iterable and interpret the trace...

86d501cca01a60596a90ae173740387b1f4b2295 authored about 2 years ago by Kyle Conroy <[email protected]>

Merge pull request #145 from ojustino/finalize-changelog-1.2.0

Prepare changelog for release v1.2.0

f8c67a9139d4c34a296f0f7d539dd2573f8aa622 authored about 2 years ago by ojustino <[email protected]>

Updated changelog

c8f760b49c842913ef690147731563a75cddb2a4 authored about 2 years ago by ojustino <[email protected]>

Rewrite boxcar weights logic (#141)

* rewrite boxcar weights to handle subpixel width and extending off image
* forbid negative wid...

3fcee568ae1db0c281968b9832a113ca597685d8 authored about 2 years ago by Kyle Conroy <[email protected]>

Merge pull request #143 from kecnry/bg-spectrum

Background.bkg_spectrum and sub_spectrum

44d3533edf9016ee99b1fd722ebba1c177ecba9b authored about 2 years ago by Kyle Conroy <[email protected]>

Merge pull request #142 from kecnry/docs-quickstart

basic quickstart examples for spectral extraction

f6a834f4c6416facf670f655db124ff8486d88ba authored about 2 years ago by Kyle Conroy <[email protected]>

Apply suggestions from code review

Co-authored-by: ojustino <[email protected]>

cade20905d3ce14f76b2e8913f78b02a5297edbc authored about 2 years ago by Kyle Conroy <[email protected]>

reply to review suggestions

478c99cb4991f786489709f9d13243b8ff31f9ad authored about 2 years ago by Kyle Conroy <[email protected]>

basic quickstart examples for spectral extraction

d03866ab63dac11c3f0559f7eecafe1e3b25af4f authored about 2 years ago by Kyle Conroy <[email protected]>

Background.bkg_spectrum and sub_spectrum

c53ea53d3a58c54cb6d576b8d5b99f1a74a4de60 authored about 2 years ago by Kyle Conroy <[email protected]>

Merge pull request #140 from tepickering/fix_doc_build

Enable nitpicky mode for sphinx and get docs to build cleanly

78e68b7d0a870948f58ed6766f1beef005d1fe9d authored over 2 years ago by T. E. Pickering <[email protected]>

fix reference and convert to real angstrom symbols

76f75ad96b1742dd52e5eda3ddd4c637a78bdd40 authored over 2 years ago by T. E. Pickering <[email protected]>

minor typos

856dfa396a840139d0a3468831e6c71aadae1c16 authored over 2 years ago by T. E. Pickering <[email protected]>

switch default doc mapping to stable versions

ebfe870b6d0a05b1865c0839e5dd9323bd84f65e authored over 2 years ago by T. E. Pickering <[email protected]>

various documentation fixes and fleshing out of links

88817ff2f38c16f7d476a2113189e1e8360776a7 authored over 2 years ago by T. E. Pickering <[email protected]>

manually fix sphinx mapping to point to documentation it wasn't finding automatically

80a434df8362750449262b6184e835e97382ef0c authored over 2 years ago by T. E. Pickering <[email protected]>

Merge pull request #125 from ojustino/bkg-overlap-fix

Found cause of background "overlap" error

b19747e9ae8274bec9024c31f52cf7e770c0682f authored over 2 years ago by Kyle Conroy <[email protected]>

Update specreduce/calibration_data.py

Co-authored-by: P. L. Lim <[email protected]>

f3e50cceb874a70f2579c8b2bc1d02112790fb44 authored over 2 years ago by T. E. Pickering <[email protected]>

Update docs/specphot_standards.rst

Co-authored-by: P. L. Lim <[email protected]>

1c2a440bfd3b8bd707d711c2ee3d29bc2d244849 authored over 2 years ago by T. E. Pickering <[email protected]>

Update docs/specphot_standards.rst

Co-authored-by: P. L. Lim <[email protected]>

e1e0f290a90f8ca0f059a4f07741cef8c9eb2c36 authored over 2 years ago by T. E. Pickering <[email protected]>

Update docs/specphot_standards.rst

Co-authored-by: P. L. Lim <[email protected]>

cb27de216211acd72084e2b9d868eaf5caa51d16 authored over 2 years ago by T. E. Pickering <[email protected]>

fix line too long by 4 chars to make codestyle test happy

e79a42dfbbd54cc0792a27e6c9662ef7506c6743 authored over 2 years ago by T. E. Pickering <[email protected]>

enable nitpicky mode for sphinx and clean up the various messes to get the docs to build cleanly

54f9fdd767d64d7fc134aab42c5382f0ac87af4e authored over 2 years ago by T. E. Pickering <[email protected]>

Added KosmosTrace tests for coverage

e364baf129ad9a51a620602d3a08aaaceb812c8d authored over 2 years ago by ojustino <[email protected]>

Removed more old weighting logic

Co-authored-by: Kyle Conroy <[email protected]>

6822430efe82555e25d388d54471c37c96615fe1 authored over 2 years ago by ojustino <[email protected]>

Removed unneeded lines from _get_boxcar_weights()

28e0c0e0cd58d05ec81e7c105167bfb7a49b9db1 authored over 2 years ago by ojustino <[email protected]>

Updated changelog

0075390ad7f13dad20b4bcb5dc7ef1ff0064e6a9 authored over 2 years ago by ojustino <[email protected]>

Found and corrected bug in _get_boxcar_weights()?

66cbe29fa658f8ed39e4cf74c153307fb4eedf8a authored over 2 years ago by ojustino <[email protected]>

Fixed codestyle

4f6aa6117d24d744537c8b8917d8a55d33acffe8 authored over 2 years ago by ojustino <[email protected]>

Treat N.0 as pixel N's center (not edge) in boxcar

0a4c61b20bbf5881b282dddd815e6ec5c86d5736 authored over 2 years ago by ojustino <[email protected]>

Merge pull request #127 from kecnry/bg-oob-checks

logic to detect background regions extending beyond image limits

762386583465777940b21509e309ff9744e65633 authored over 2 years ago by Kyle Conroy <[email protected]>

Merge pull request #134 from pllim/patch-1

MNT: Remove version template

874f519a14812dbb45cbba03163938f4e39124ce authored over 2 years ago by T. E. Pickering <[email protected]>

Merge pull request #136 from pllim/patch-3

MNT: Remove dead code from APE 17

bc1f1efee12867f715f13ed5797dcb8df2d11833 authored over 2 years ago by T. E. Pickering <[email protected]>

Merge pull request #135 from pllim/patch-2

DOC: No need to automodapi the top-level package

3cf1aebc27255286c827f019b1dee830467fa21e authored over 2 years ago by T. E. Pickering <[email protected]>

MNT: Remove dead code from APE 17

7b0dce04a5721502d42b0252dad1ce0fd80789c3 authored over 2 years ago by P. L. Lim <[email protected]>

MNT: No need to automodapi the top-level package

b2b77f3efe1960cd52012c541f323203fec3f117 authored over 2 years ago by P. L. Lim <[email protected]>

MNT: Remove version template

8ef38a7bd9fab22385e1c8298b3b63b1c4a6aba3 authored over 2 years ago by P. L. Lim <[email protected]>

cast to array to avoid memoryview error

fa2cb54630d2344df3d086b9e2a59ec564364694 authored over 2 years ago by Kyle Conroy <[email protected]>

logic to detect background regions extending beyond image limits

ea47a0dda27adf87955612561b439461c8bc942e authored over 2 years ago by Kyle Conroy <[email protected]>

Merge pull request #124 from ojustino/release-1.1.0

Preparation for release v1.1.0

7e7e4a6f73089fb2ec3bcb1d65985cdd8eacb2c9 authored over 2 years ago by ojustino <[email protected]>

Release v1.1.0

53631430a1952e9ecc3c67a9684e362e0fa9b9f4 authored over 2 years ago by ojustino <[email protected]>

Merge pull request #123 from ojustino/changelog-add-missing

Added changelog entry for HorneExtract API change

b75d04b5b6c384c13a727867139c90ed762e9218 authored over 2 years ago by ojustino <[email protected]>

Added changelog entry for PR 105

3db91773e33c2833c1a52e69b30592eb61beb438 authored over 2 years ago by ojustino <[email protected]>

Merge pull request #118 from ojustino/correct-default-mask

Correct default mask for array images in HorneExtract

abb57251f68cfbc8472c9cff76e9cf6e8d9672f9 authored over 2 years ago by ojustino <[email protected]>

Adjusted test to new extraction API

e295641cf841a723f1dd1a25563a8af808f191bd authored over 2 years ago by ojustino <[email protected]>

Wrote tests for Horne use with array-like images

ada5936b067cd76b985d6853b2c6bd5597f1477e authored over 2 years ago by ojustino <[email protected]>

Updated changelog

75b3f083a4c019e65ed3a83d7898d4e89fae1a5e authored over 2 years ago by ojustino <[email protected]>

Get mask object from numpy masked_invalid

6a546e33f147845058ac7da5f9c37a0b2dd58d49 authored over 2 years ago by ojustino <[email protected]>

Merge pull request #117 from kecnry/extract-init-support

extract: more consistent API compared to other steps

37d45025eea2c94993fbad3e00bb7a70a474a48c authored over 2 years ago by ojustino <[email protected]>

changelog entry

2bcd8ced326a979dbb804386e88ede1a07620af1 authored over 2 years ago by Kyle Conroy <[email protected]>

extract: more consistent API compared to other steps

252298ad0e29750dd0f742c3335e5aaf5274a77f authored over 2 years ago by Kyle Conroy <[email protected]>

sandbox notebook updates

c2b34e597fb992b4d9baadf5913489c75e8165fd authored over 2 years ago by Kyle Conroy <[email protected]>

Merge pull request #122 from kecnry/peak-method-changelog

changelog entry for (already merged) KosmosTrace peak_method

5ce02cba27e8a55c7f687d234b178be5a6d0f1d3 authored over 2 years ago by ojustino <[email protected]>

Merge pull request #120 from ojustino/update-citation

Update citation file

59b8a8bd87f3e645797eaff4e2e77798d21a4b55 authored over 2 years ago by ojustino <[email protected]>

Merge pull request #119 from ojustino/readme-path-typo

Correct license path in README

64e33e6d1b8a1ab9d54998958b1295731de222f4 authored over 2 years ago by ojustino <[email protected]>

changelog entry for (already merged) KosmosTrace peak_method

c292118c56cce719b3b589fc0860d8daeed16d0a authored over 2 years ago by Kyle Conroy <[email protected]>

Update citation file

1c6cf409e3644a05a8987fa750fbf2fcde0f2e04 authored over 2 years ago by ojustino <[email protected]>

Correct license path in README

0dc4afc36bc5ebc003fdc4fa027986df10ad66b0 authored over 2 years ago by ojustino <[email protected]>

Kosmos trace peak_method options (#115)

* implement peak_method optional argument to KosmosTrace - currently can be one of: gaussian (de...

d1f3a31876b950417f18fe19f41dfcf805650a77 authored over 2 years ago by Kyle Conroy <[email protected]>

HorneExtract: require variance array to be fully positive (#114)

* if ALL zeros, will be treated as unweighted by defaulting to variance of ones
* if ANY negati...

993194a967a3b7789134ab069831a5f4b77ffe3b authored over 2 years ago by Kyle Conroy <[email protected]>

Merge pull request #113 from astropy/dependabot/pip/notebook_sandbox/jwst_boxcar/numpy-1.22.0

Bump numpy from 1.21.0 to 1.22.0 in /notebook_sandbox/jwst_boxcar

ff0ea57975eda53bd2ff4ea106153775893890b4 authored over 2 years ago by T. E. Pickering <[email protected]>

Merge pull request #110 from tepickering/add_citation

Add citation and Zenodo badge

f02e163a067bb9bc2ddaf5263cea5109a7115211 authored over 2 years ago by T. E. Pickering <[email protected]>

Bump numpy from 1.21.0 to 1.22.0 in /notebook_sandbox/jwst_boxcar

Bumps [numpy](https://github.com/numpy/numpy) from 1.21.0 to 1.22.0.
- [Release notes](https://g...

690c1c62c3df90c9e37174420fae9c21fc65c8ed authored over 2 years ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Merge pull request #111 from kecnry/improved-api-docs

Improved api docs

95acdcbbe6e9ee63f8f85a12cb296e700a1f3685 authored over 2 years ago by T. E. Pickering <[email protected]>

Merge pull request #112 from astropy/dependabot/pip/notebook_sandbox/jwst_boxcar/notebook-6.4.12

Bump notebook from 6.4.10 to 6.4.12 in /notebook_sandbox/jwst_boxcar

224a321b71ff4aaabf7e9dbf1dda64f71184bb93 authored over 2 years ago by T. E. Pickering <[email protected]>

Bump notebook from 6.4.10 to 6.4.12 in /notebook_sandbox/jwst_boxcar

Bumps [notebook](http://jupyter.org) from 6.4.10 to 6.4.12.

---
updated-dependencies:
- depende...

c8477e74b1bd09c8ec67f8f76a701a3c4f8c9a58 authored over 2 years ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

build API docs for tracing and background

d13b8f0af0880d980954b42083cc9ac07f13006d authored over 2 years ago by Kyle Conroy <[email protected]>

add simple examples in API docs

a722a91d722d6550d528735792200cb3fba36262 authored over 2 years ago by Kyle Conroy <[email protected]>

Add myself to author list

c7fc5bed98d089a3d66c520a90e6894f6dde0493 authored over 2 years ago by Erik Tollerud <[email protected]>

add self to authors list in citation.cff

60f2f69c5e253d94c207d046a504db55fb9766fb authored over 2 years ago by Kyle Conroy <[email protected]>

add initial CITATION.cff

5c4efe691bc4d23551e3abc01759eb3857835f51 authored over 2 years ago by T. E. Pickering <[email protected]>

add zenodo badge

d079dbfbe1cd75d57312d24a2879a081ea98317a authored over 2 years ago by T. E. Pickering <[email protected]>

Merge pull request #107 from tepickering/rc_testing

Testing updates and post-release fixes

ab4a2c2f7d57591aec824813cd2a5183bd4d745d authored over 2 years ago by T. E. Pickering <[email protected]>

refactor how pre-release tests are configured and move the pre-release test to the cron tests

b36eabb6b34dba79776440526eda8d41b804f7eb authored over 2 years ago by T. E. Pickering <[email protected]>

fix syntax for assert statements to match coding standards; fine-tune placement of warning handers

57315fd3b64bdc5e76f5c3bd5ebf5206725feada authored over 2 years ago by T. E. Pickering <[email protected]>

remove pytest-astropy pin from oldestdeps

549e05a576ed8b8b9bedf1926d0cecfbe46fcfb0 authored over 2 years ago by T. E. Pickering <[email protected]>

get stricter about what warnings to ignore and error otherwise; tighten context manager in test

368c570b8c8f5400239121499e7a37ca9e5859ad authored over 2 years ago by T. E. Pickering <[email protected]>

handle warnings in tests more intelligently

7e13f1e0ab0b707fa892bdf5ea6e8955e1399723 authored over 2 years ago by T. E. Pickering <[email protected]>

update RTD config

3b433af43b194dbaac247cd05c391567ee35d5f5 authored over 2 years ago by T. E. Pickering <[email protected]>

bump up oldest tested matplotlib; 3.1 failed due to deprecations

5815e57e27ee3929404534bcb8771ef049b70ac9 authored over 2 years ago by T. E. Pickering <[email protected]>

add rc test to CI matrix for now

fc4d25a1ab6881758fa35d034f7bc47da94b58f1 authored over 2 years ago by T. E. Pickering <[email protected]>

add astropyrc test

06affbb2ca9227efdec4abd01fa09ad383e10dc5 authored over 2 years ago by T. E. Pickering <[email protected]>

add weekly tests to check links and upstream breakage

7f73dbed42a87181e6d93c26f24361d30802cbc4 authored over 2 years ago by T. E. Pickering <[email protected]>