github.com/astropy/specreduce commits | Ecosyste.ms: OpenCollective

fix input for background.traces, raise error in FlatTrace for negative trace (#211)

408547c3a4d23e5f006fd2c48628525c208ca538 authored 10 months ago by Clare Shanahan <[email protected]>

clean up image parsing and tests (#210)

85e1b20f3e8e51d1322916a00adf4caf68a49899 authored 11 months ago by Clare Shanahan <[email protected]>

move part of image parsing to its own function to avoid issue with classmethod, and fix issue with parsing quantities (#209)

cb5071fa023a0089e051c6b03bd26eac129a810b authored 11 months ago by Clare Shanahan <[email protected]>

set bin peaks to NaN in FitTrace when fully masked bin is encountered (#207)

* fix for masked values in FitTrace

* fix merge conflict

* unskip test

* Update CHANGES...

715361ecaa44b138c4dd6512ead2052b88dcceb8 authored 11 months ago by Clare Shanahan <[email protected]>

Merge pull request #205 from cshanahan1/fit_trace_nonf_fix

fix for masked values in FitTrace

2d49215670ca6a995b229f2a4ce8167f57bfb2d7 authored 11 months ago by T. E. Pickering <[email protected]>

fix for masked values in FitTrace

cf68b9f7e2d211fbf2a1d4ef2e4046731ac1972f authored 11 months ago by Clare Shanahan <[email protected]>

Merge pull request #196 from kbwestfall/terms

Document with terms discussed during the recent NOIRLab workshop

b0b1b08bac5cb0d5e6113f246c35530a7080d9f6 authored 11 months ago by T. E. Pickering <[email protected]>

Merge branch 'main' into terms

21950f72404990ef2d835d4620d0520bcad25eba authored 11 months ago by Kyle Westfall <[email protected]>

fix warning message (#194)

aea9d50a6fffb7b42dc308259a10a49d244cd08c authored about 1 year ago by Clare Shanahan <[email protected]>

MNT: Infrastructure and other updates (#202)

* MNT: Infrastructure and other updates. Replace broken URL and deprecated np.trapz usage. Ignor...

3ec660acf7a4bf2119a14ef40944ecd05ffffdd6 authored about 1 year ago by P. L. Lim <[email protected]>

Merge pull request #201 from neutrinoceros/cleanup_buildtime_dependencies

BLD: cleanup unused build-time dependencies

aa4ceabbfb69595ac58c2ff29a220aabe1e37f68 authored about 1 year ago by P. L. Lim <[email protected]>

BLD: cleanup unused build-time dependencies

b6e51103abf33efb90410c7bab0bdfd21257e3a6 authored about 1 year ago by Clément Robert <[email protected]>

terms doc

435dd3f2c273fa08945500ec4ef6e37d4132357c authored about 1 year ago by Kyle Westfall <[email protected]>

Update and clean up test environments (#190)

* Install dev astropy in 3.12 test, clean up other tests

* Pull astropy dev wheel instead of ...

648c86131b7ab10b171aebda947c40b4aca60004 authored about 1 year ago by Ricky O'Steen <[email protected]>

allow matched pixels/wavelengths to be in either direction (#177)

* enforce spectral axis being left to right for wavelength calibration

* remove reference to ...

0d800fd584ed484a35cb4d064894620cd71501fd authored over 1 year ago by Clare Shanahan <[email protected]>

Merge pull request #180 from pllim/clean-conftest

TST: Clean conftest.py

e0299cc2a63c16a349260af16cdeb1be69862481 authored over 1 year ago by P. L. Lim <[email protected]>

TST: Clean conftest.py

102b29b57c8ad61d6183843f38c945e9593c239d authored over 1 year ago by P. L. Lim <[email protected]>

Merge pull request #178 from pllim/tst-scientific-python-nightlies-url

TST: Update URL for Scientific Python nightlies

036dac9779d0bcbc7de4a9484c52536bebc1c016 authored over 1 year ago by Kyle Conroy <[email protected]>

TST: Update URL for Scientific Python nightlies

6a6b49cf79d61dfb05a477125811f2dfd89492f7 authored over 1 year ago by P. L. Lim <[email protected]>

store the fitted_model as its own cached_property (#176)

* store the fit_model as its own cached_property and rename some arguments for clarity

014f37b74b4b66fc739e50affd1dfc161aee53c0 authored over 1 year ago by Kyle Conroy <[email protected]>

Expose residuals in WavelengthCalibration1D (#175)

* add fit residual attribute

c64de220a82632567a0b013e044a7aeb4cda57df authored over 1 year ago by Clare Shanahan <[email protected]>

Merge pull request #173 from cshanahan1/horne_profile

Add option to fit and use self profile for HorneExtract

b86c24b36d06b2d39e5386f384496d90d226b472 authored over 1 year ago by Clare Shanahan <[email protected]>

added option for empirical interpolated spatial profile for HorneExtract

f29264252e7ed915671894bb5673b03492db5980 authored over 1 year ago by Clare Shanahan <[email protected]>

Merge pull request #171 from cshanahan1/extract_bkgrnd

allow HorneExtract to accept None as a valid input for background model

a033fe715e9381c6f0882045869f84625c13491a authored over 1 year ago by Clare Shanahan <[email protected]>

allow HorneExtract to accept None as a valid input for background model

4356862d50706621b50203fd2f4487e0533c20ce authored over 1 year ago by Clare Shanahan <[email protected]>

Add a note about FitTrace with low S/N (#172)

* Add a note about FitTrace with low S/N

876c780bfc02dd822b8345439c985c99f5d611a7 authored over 1 year ago by Ricky O'Steen <[email protected]>

Merge pull request #165 from tepickering/synth_arcs

Synthetic wavelength calibration data

94fce577e6a166a9c3a914d2154278e85a90d30b authored over 1 year ago by T. E. Pickering <[email protected]>

Implement 1D wavelength calibration classes (#162)

345c45208e398be3cac7be28e6addbd404f1c21f authored over 1 year ago by Ricky O'Steen <[email protected]>

expunge specreduce_data from setup.cfg

3eb4344160b6da02b0767f98ebfc3e13f7100e27 authored over 1 year ago by T. E. Pickering <[email protected]>

mark the tests that download remote data

7b748278850e3a5c210aae149d79cd9db5053099 authored over 1 year ago by T. E. Pickering <[email protected]>

remove datadeps from tox.ini; enable remote_data when measuring coverage

403b594159a812c9903340b0008b2ef2d07c8b43 authored over 1 year ago by T. E. Pickering <[email protected]>

remove datadeps from CI workflow; add test for python 3.11

4111f74dc4be0a96c66b54cd4f404d31beb23e44 authored over 1 year ago by T. E. Pickering <[email protected]>

add tests to fill in coverage of synth_data.py

24cabbf877a812136b37294e5548175417bfda87 authored over 1 year ago by T. E. Pickering <[email protected]>

codestyle fixes

cdbcb0615c049fc2ee2f12f829ab0331bc1ec9fb authored over 1 year ago by T. E. Pickering <[email protected]>

add test coverage for make_2d_spec_image and check for invalid wave_unit

5324ae9575dc1dd067d8ea3b04fa76d81a51355f authored over 1 year ago by T. E. Pickering <[email protected]>

strengthen check for existance of a spectral axis in make_2d_arc_image()

714d720d1b60e7c0ddda10b7c8c42d59b93f1a84 authored over 1 year ago by T. E. Pickering <[email protected]>

add function to make a 2D spectrum that contains both a trace and emission lines

009acbc1e600b9a65293a521ae781225a7339066 authored over 1 year ago by T. E. Pickering <[email protected]>

fix typos found in pr review

36bd41ad235befe04604e50ecc6901182b93e8bf authored over 1 year ago by T. E. Pickering <[email protected]>

add python 3.11 to tox envlist

8bff32af5d2a5202fd48d790f9b7c4ddff6543dc authored over 1 year ago by T. E. Pickering <[email protected]>

change symbol name of make_2dspec_image to make_2d_trace_image

f99aedf4765083b2015604811a5e3ce183974fb8 authored over 1 year ago by T. E. Pickering <[email protected]>

Merge pull request #166 from camipacifici/horne-docs

Improve Horne docs

587e38ac8e1df19b2bd231485da0fa6b7f2b2c75 authored almost 2 years ago by Kyle Conroy <[email protected]>

Improve Horne docs

e56d1813b824a8e197c345fe9f805cf017ed6f22 authored almost 2 years ago by Camilla Pacifici <[email protected]>

codestyle fixes

6028e6696c4f7f7a3d949607e2d72b0885136aa4 authored almost 2 years ago by T. E. Pickering <[email protected]>

more dev notebook edits

22c2555250425f0c2c09598fcf8a801f3f0d94e2 authored almost 2 years ago by T. E. Pickering <[email protected]>

docstring fixes; add example of using a WCS spectrograph model to create non-linear dispersion

f8aa8c467e2e9b544190f20d3df8d4f6e813e4b7 authored almost 2 years ago by T. E. Pickering <[email protected]>

add ability to convert vacuum wavelengths used by pypeit to air wavelengths

6fba811902e393ec32c23d5847418e7523b68393 authored almost 2 years ago by T. E. Pickering <[email protected]>

dev notebook edits

4b21b01f82fdea649f98d9622d80616411a76c57 authored almost 2 years ago by T. E. Pickering <[email protected]>

allow other 1D polynomials that are defined within a domain; only add lines if linelist is not None

9572b655380881890a41428f629cde8bec755bb0 authored almost 2 years ago by T. E. Pickering <[email protected]>

add tests of make_2d_arc_image

7015b5f5af769f63c7bcf7d6ee702b2a5f909221 authored almost 2 years ago by T. E. Pickering <[email protected]>

fix docs for synth_data; add example plot for make_2d_arc_image to docstring

8e04330fe235d3ce968f9ae35fd57e89834c4291 authored almost 2 years ago by T. E. Pickering <[email protected]>

dev notebook edits to explore adding tilts to synthetic arcs

5a14ba301c2009ddd2fea62828846dcaa61d98bc authored almost 2 years ago by T. E. Pickering <[email protected]>

add support for spectroscopic tilts in the synthetic arc images; flesh out docstrings

66fc3ecd4537556b3f3f3cf62e48f15985fb30fc authored almost 2 years ago by T. E. Pickering <[email protected]>

dev notebook edits to explore making synthetic 2d arc images

700cce420cd2e6738031153be823699a7fe6c328 authored almost 2 years ago by T. E. Pickering <[email protected]>

initial implementation to make a synthetic 2D arc lamp image

16a4060e347d9890850485fd3bca1083172898b2 authored almost 2 years ago by T. E. Pickering <[email protected]>

add wavelength units to linelist tables

21fb2c05f7feca1b19dc3a1682be0eb47c0367ba authored almost 2 years ago by T. E. Pickering <[email protected]>

fix docs and specphot tests

a6119a92276f6571c348f5187722484377d610c3 authored almost 2 years ago by T. E. Pickering <[email protected]>

add missing dep for pyparsing

0837b2917d767c9466b0fc772b2b1df64f221c43 authored almost 2 years ago by T. E. Pickering <[email protected]>

add tests for loading pypeit linelists

250be2ed93c91d246936358b34545d2e4ae1be48 authored almost 2 years ago by T. E. Pickering <[email protected]>

hardcode repo paths in get_pypeit_data_path

dac5b2b9d55fcc96c2f96e108cfc7a0c12190570 authored almost 2 years ago by T. E. Pickering <[email protected]>

add function to load pypeit linelists; rename things to not be as specific about arcs since sky lines are often used in lieu of or in addition to lamps

0c987aa1b4b4b52ab0d71dbf7c1bab6d02d86635 authored almost 2 years ago by T. E. Pickering <[email protected]>

add test for get_pypeit_data_path

568e2dc4ff9a0beea1105d88626a2485e409cad9 authored almost 2 years ago by T. E. Pickering <[email protected]>

calibration_data: do away with specreduce_data import and use cached downloads for everything; add support for loading pypeit reference data; add list of pypeit-supported line lists:

96d8a2c61a5f814ac13b9b0c44ee96cce3faf30a authored almost 2 years ago by T. E. Pickering <[email protected]>

Modify masking and NaN handling in `HorneExtract` (#163)

* Update NaN handling and masking in HorneExtract
* Removed masking so NaNs propagate into 1D s...

799ff494f31eec7575b6d0ff167f09c449237d13 authored almost 2 years ago by ojustino <[email protected]>

Merge pull request #159 from ojustino/background-handle-nans

Prevent (most) NaN propagation in `Background` and `BoxcarExtract`

7043f788007e88286a6b6157f7395681776887b3 authored about 2 years ago by ojustino <[email protected]>

Add test coverage

bd72fae93f4f463cdf18ce595f9863874117461a authored about 2 years ago by ojustino <[email protected]>

Only allow NaNs in boxcar to propagate

1edc7b67876dd14c5c485991457b8aa8e9bf873c authored about 2 years ago by ojustino <[email protected]>

Prevent NaN propagation in Background

c77c87791fe15a8634234350eb75084a3dbc2a7c authored about 2 years ago by ojustino <[email protected]>

Merge pull request #160 from ojustino/tox-408-update

Update passenv syntax for tox 4.0.8

7be9a76e3ba803cec0450b84e076e04487d3e3f1 authored about 2 years ago by ojustino <[email protected]>

Update oldestdeps tox test

6c198b630ecb04ea72dce68a8d8e1eec1e5b25a1 authored about 2 years ago by ojustino <[email protected]>

Update passenv syntax for tox 4.0.8

37eff1b77b069c9583f274edfda958014775dddb authored about 2 years ago by ojustino <[email protected]>

Merge pull request #156 from ojustino/finalize-changelog-1.3.0

Prepare changelog for release v1.3.0

fd2e7ae7208de0b4209571734e920c1f9cd10e04 authored about 2 years ago by ojustino <[email protected]>

Fix change log [ci skip]

c92f545f3905275a20b857c1bf65bbcc0d5ccfc7 authored about 2 years ago by P. L. Lim <[email protected]>

Update changelog for v1.3.0 release

cce6e9d78d8cdfb8cfce46d0a19f0ab7f3f223c1 authored about 2 years ago by ojustino <[email protected]>

Added changelog record for #148

d5c6641832179e6f750dae4533837bc2025b2963 authored about 2 years ago by ojustino <[email protected]>

Merge pull request #155 from ojustino/dump-masked-array

Use simpler checks for invalid values

951ede04a764571a7a0d1adfad4759465979a7e8 authored about 2 years ago by ojustino <[email protected]>

Merge pull request #154 from ojustino/notebook-img-parsing

Update image handling in notebooks

d33d892290d4d04d55aec5280be03b6531d1cb40 authored about 2 years ago by ojustino <[email protected]>

Update changelog

3b242b7b7ad10392652a4eaba0a93aa5655069e4 authored about 2 years ago by ojustino <[email protected]>

Update image handling in notebooks

5e857122e062d942b8df2fdaa62eb4fcd422a66b authored about 2 years ago by ojustino <[email protected]>

Add dev numpy to devdeps

75b1a03f84b81f7d5a887e8548c8ba05adb8c654 authored about 2 years ago by Pey Lian Lim (Github) <[email protected]>

Simplify trace tests

1fe4a572b810b61150705649bca0bd3f9eb2d179 authored about 2 years ago by ojustino <[email protected]>

Use simpler checks for invalid values

ddb0f7b354ac17a35e391bd38fc26cf8371534e8 authored about 2 years ago by ojustino <[email protected]>

Introducing spectral extractions for non-flat traces (#148)

* Introducing spectral extractions for non-flat traces
* Adding test coverage for Horne extract...

6b2ffb023179a797d6dcd80c791355df2c2b264b authored about 2 years ago by Brett M. Morris <[email protected]>

Merge pull request #150 from larrybradley/fix-changelog

Fix changelog formatting

05a174daa0c925b3c09b2dc734f0ff2b833b8850 authored about 2 years ago by ojustino <[email protected]>

Merge pull request #149 from rosteen/intro-docs

Add summary of capabilities/user stories to docs index page

da21b5e9d21239288dcec9372b2b4df93cdf7236 authored about 2 years ago by ojustino <[email protected]>

Mention third trace option

82675f65856f4738721922e2f337c3377d3e149d authored about 2 years ago by Ricky O'Steen <[email protected]>

Apply suggestions from code review

Co-authored-by: ojustino <[email protected]>

aa9897cb6c5d52acb66ad4a24d0d731d6d68326b authored about 2 years ago by Ricky O'Steen <[email protected]>

Fix changelog formatting

761d991f1a515ac43d3d28bcdc87a3b09727da5a authored about 2 years ago by Larry Bradley <[email protected]>

Merge pull request #144 from ojustino/accept-spectrum1d

Better handled Spectrum1D images across classes

0192706ebdb11a0f78979bdc510b144e0719264a authored about 2 years ago by ojustino <[email protected]>

Address review comments

34a143951f87f6b254e3a05ce12506f1949e4f57 authored about 2 years ago by Ricky O'Steen <[email protected]>

Add summary of capabilities/user stories to docs index page

6183995bd717e2ec806697655052b862b6698c4b authored about 2 years ago by Ricky O'Steen <[email protected]>

Update changelog

90b6460f04150755469327302a8303b7de091eb6 authored about 2 years ago by ojustino <[email protected]>

Bump specutils requirement to v1.9.1

14f48c65d1b1016c6d92b58fa25b13026cc55471 authored about 2 years ago by ojustino <[email protected]>

Begin deprecation process for bkg_array

53fd1a456d33231cf101b32d57f7e47d46e3cc33 authored about 2 years ago by ojustino <[email protected]>

Make default flux unit DN; bump minimum Python req

c9e076ef47b6149fe023f50e3b4ee9aa346daac9 authored about 2 years ago by ojustino <[email protected]>

Fix Background.sub_image for physical wavelengths

4b0bdd54cb8ccfaa8c7ca9a277b4e834d3988126 authored about 2 years ago by ojustino <[email protected]>

Wrote tests for image parsing methods + codestyle

0ec792d35708d6ba50614587ae9edd6beabc9b53 authored about 2 years ago by ojustino <[email protected]>

Consolidate image parsing in _ImageParser mixin

3eb1527968c3e68923ac57fe2b7ea2e9559deb26 authored about 2 years ago by ojustino <[email protected]>

Fixed Spectrum1D parsing in Background and tests

98fff7fc2432f9e511613af93f5ef69eda7060ea authored about 2 years ago by ojustino <[email protected]>

Fixed Spectrum1D parsing in Horne and its tests

aca0ec70343937355ffef6e76918f9fa476b4dc0 authored about 2 years ago by ojustino <[email protected]>

Drop _to_spectrum1d_pixels to allow other axes

68a5766460393f79ce8a08a2728716e785fcd572 authored about 2 years ago by ojustino <[email protected]>