github.com/OpenMS/de.openms.knime commits | Ecosyste.ms: OpenCollective

Allow KNIME 5.x

6eb58fd88145c3dcba4c791d9ef1d6562b9bd367 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

[fix] folder name for thirdparty plugin

cb75cec6397c5f572ecaaa77c3aca0696ebbd77a authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #48 from jpfeuffer/feat/thirdpartypluginsplit

create different startup checks for openms and thirdparty

68e3a586668bcc4b178105011536aa9c055d4298 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

another pom version

d6241e1a5dbc1e0c621c8f71a5f2f9a791939c82 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

adapt plugin version in pom

c028850ece6c48229c46deccf06b4e95d3f2978e authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

create different startup checks for openms and thirdparty

2edfba4da3311b34887366acc311fe4ee6d3b700 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Update startup check for Pwiz (only NET4). OpenMS ships own redist now.

ef4e9e52edeec538ea2844ac6aa33c63c3f0b7d7 authored about 2 years ago by jpfeuffer <[email protected]>

Fixed startup check, added potential new way of checking and extended message.

40f2b4a5a09930b5357509ff2ecec0893c7f219f authored about 2 years ago by jpfeuffer <[email protected]>

Merge pull request #47 from jpfeuffer/updateDeps

modify build.properties for packaging after dep update

865dca137384e1c43ef5ce6601851677eaf1ad65 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update OpenMSStartupMessageProvider.java

e31faa0286bfb5ea4d2caee46bcf8941043fd57a authored about 2 years ago by Julianus Pfeuffer <[email protected]>

modify build.properties for packaging

98c79b0ac80fcca5ff25a5e422f08542143ecf9c authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #46 from jpfeuffer/updateDeps

gitignore completely ignored my new libs

84c106f4bb1f712d6bd81df78889ecb18f65085e authored about 2 years ago by Julianus Pfeuffer <[email protected]>

gitignore completely ignored my new libs

411452fb888a36d512d999438855ed851c481640 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

update url to dep installer

6dad374a80ed8ce972fb934b89c3f8c74597040b authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #45 from jpfeuffer/updateDeps

Update dependencies

d07d4b70edf24f3c107b6dd5e8427015710ec571 authored over 2 years ago by Julianus Pfeuffer <[email protected]>

use exported for classpath

ff534d9cb80185efb331d47ae255a5def1283c01 authored over 2 years ago by Julianus Pfeuffer <[email protected]>

[UPDATE] Remove unnecessary imports and update dependencies.

73613d5d339d48aef977564e31c65f68917ef7a7 authored over 2 years ago by Julianus Pfeuffer <[email protected]>

Fix TextReaders for new start, end pos columns (and more)

20a5ff91a226b0503aa33772880f9815a5dcd2ac authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Update textexporter to add new start/end cols

ff4e2e3f8431415d2be32251f410c852a0fbf612 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

switch all buildprops to target/classes

990a84759a6ab0929bb59c5a4b661892a5f38828 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

remove bin from build path in importers

4bb831c06011b04b54b979fbba33bc00304175eb authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Better fix

dcf4490a573baaeeb0f99986c0d05d9c5e1229d5 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Update .classpath

2c0ab466e90d167b8b1a20db5d0dc968f89276d1 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #44 from jpfeuffer/fix/importerclasspath

fix importer classpath

2ab5f9ae181ba19c9af28c02776a06fdc68799d0 authored almost 4 years ago by Julianus Pfeuffer <[email protected]>

fix importer classpath

b81d446863b030f521a4b1af4760d93223ce49b0 authored almost 4 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #43 from jpfeuffer/fix/se_score2double

[FIX] correctly parse (best_)search_engine_score.* to double

f59c62f363a321c7406084de246bccb2c3871682 authored almost 4 years ago by Julianus Pfeuffer <[email protected]>

[FIX] correctly parse (best_)search_engine_score.* to double

2b97d520cf1481830fb5dace7b0dd6bf689abb8e authored almost 4 years ago by Julianus Pfeuffer <[email protected]>

Added FileType check and fixed equality check of colnames

437b2fa259839730129ee64bdeb7a977939cbcef authored about 4 years ago by Julianus Pfeuffer <[email protected]>

[NOP] correct comment

33d346b43a75175bbcd7fa9116ee8ae85cf1d377 authored about 4 years ago by Julianus Pfeuffer <[email protected]>

variable reuse

486fd51b1be6e5c53109ce619d2e9477178e13a6 authored about 4 years ago by Julianus Pfeuffer <[email protected]>

More enforcements of mzTab standard column types

84a6b21a4d26cf22f8aff6180746201936bd7197 authored about 4 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #42 from genericworkflownodes/jpfeuffer-patch-1

[FIX] Forgot if-cases for splitting of ListCells in MzTabReader

5243776abaa294f99460ed8440fe3b9e27295d0b authored about 4 years ago by Timo Sachsenberg <[email protected]>

Forgot if-cases for splitting of ListCells in MzTabReader

bf6e191b19bf0b26b2bce9380df320092738beb0 authored about 4 years ago by jpfeuffer <[email protected]>

Merge pull request #41 from genericworkflownodes/jpfeuffer-patch-1

Adapt mzTabReader to upcoming changes in OpenMS 2.6

bf4e5cb39d5fbe66f66511c6a71b96e2089d922b authored over 4 years ago by Timo Sachsenberg <[email protected]>

Adapt mzTabReader to upcoming changes in OpenMS 2.6

f66ecc82dafd7b08e5df4a12e191ac7e6255b73d authored over 4 years ago by jpfeuffer <[email protected]>

Remove bin from importers .classpath

f4d64baee3d12a0b89a0008f535022d92cf329c0 authored over 4 years ago by jpfeuffer <[email protected]>

Fixed pom version numbers

683be06a69a9deb06c7c666a362b753b7261dfb4 authored over 4 years ago by Julianus Pfeuffer <[email protected]>

remove nonexisting importer buildproperties

39e356853dedc724bda3cb359ee39f6cea2b9003 authored over 4 years ago by Julianus Pfeuffer <[email protected]>

remove bin from source package importers

1263b38f835082d3d41cb05a04fa13b8d4ce1278 authored over 4 years ago by jpfeuffer <[email protected]>

Merge branch 'develop' of https://github.com/genericworkflownodes/de.openms.knime into develop

05c2f9fdb5a200b262afce955aafb297e9a70776 authored over 4 years ago by Julianus Pfeuffer <[email protected]>

forgot new files

29baf6c5320e4c90e5e84a3d2cdd260d887c0b7f authored over 4 years ago by Julianus Pfeuffer <[email protected]>

Added maven compatibility

d1db35f935a2729701a596effdbd97e1df3a7e15 authored over 4 years ago by Julianus Pfeuffer <[email protected]>

Remove VS2005 as requirement and add comments

84174f522cb86831592e8c7f66f27794942ff30c authored almost 5 years ago by jpfeuffer <[email protected]>

Update OpenMSStartupMessageProvider.java

4ad226c0518be46cdf3d9d4ff1001d653f9a76e9 authored almost 5 years ago by jpfeuffer <[email protected]>

fix startup check

a4c1bf874ead03d8186fe0f77cc8add8f748a52a authored almost 5 years ago by jpfeuffer <[email protected]>

Fixed hexadec parsing and added test for WinRegistry

80bf1930b8afdec9d61ba47acb181930e01bf054 authored almost 5 years ago by Julianus Pfeuffer <[email protected]>

Update WinRegistryQuery.java

1591c5eb6a171f29f8107875557b12e53c401039 authored almost 5 years ago by jpfeuffer <[email protected]>

Merge pull request #40 from genericworkflownodes/prereqs250

Start on updating the prerequisites check for 2.5

f3f388e75a37f208a52601ac0dfb99a145aa4cbc authored almost 5 years ago by Timo Sachsenberg <[email protected]>

Small fixes and added missing function. Should be finished.

b0297ec3ecb1688cacb66bfb02d92d69bb60ef59 authored almost 5 years ago by Julianus Pfeuffer <[email protected]>

Start on updating the prerequisites check for 2.5

471b03df3ca30e3aad655939f8d849771317ee90 authored almost 5 years ago by jpfeuffer <[email protected]>

Remove dependencies on help file generation for buckminster

a57221b332aaf293a320ac9d49ded61cf8575ee9 authored almost 5 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #38 from jpfeuffer/extendDependencyVersionRanges

Extends some version ranges for dependencies to be future proof.

df7e13f93263ca80a8fbad594079ae1d1ea2a707 authored over 5 years ago by jpfeuffer <[email protected]>

Extends some version ranges for dependencies to be future proof. Will be checked by CI if it breaks at some point when KNIME upgrades what they ship in their update site.

2aad45688fe6cc59732a8b782c54f292fef670fc authored over 5 years ago by Julianus Pfeuffer <[email protected]>

Support GKN 1.0+

50aa0ed6892161d2a24aa2beb9e1b620bb63d7a7 authored over 5 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #37 from jpfeuffer/feature/knime4

Allow and test KNIME 4.0

625bed0f4b4113f8dd8775e44c32d69891729200 authored over 5 years ago by jpfeuffer <[email protected]>

Allow and test KNIME 4.0

75fd63742cbe400eafc75c45a902e3fad7ceadcd authored over 5 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #33 from jpfeuffer/feature/MZTabSMReaderRemoval

Removed MzTab Small molecule reader.

a90838d860902fff707c4aa24c8f8addcb7c999c authored over 5 years ago by jpfeuffer <[email protected]>

Removed MzTab Small molecule reader.

ab3d703b24efae0aef9a49c27b4a2ff8a4124f27 authored over 5 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #32 from jpfeuffer/fix/mzTabReadRT

Fixed reading ret. time (window) columns which can be Double Lists

441617dd2d54a16f3bc1981cbddefb897e5c0a5c authored about 6 years ago by jpfeuffer <[email protected]>

[DOC] comments

6302155e36986127d0935825413fd74d3cd4b28d authored about 6 years ago by Julianus Pfeuffer <[email protected]>

Fixed reading ret. time (window) columns which can be Double Lists

aedc42f13a637ac30b336b2ebc37b0cb0a44b80e authored about 6 years ago by Julianus Pfeuffer <[email protected]>

Update .classpath

4a8820306c6562180dd7774a8a89ef0119c890e9 authored about 7 years ago by jpfeuffer <[email protected]>

Update MANIFEST.MF

c9cfaa81639cd79d58e14d45e7273e68965e7de9 authored about 7 years ago by jpfeuffer <[email protected]>

Git forgot the project file for the qc nodes.

08b9b0d8a96ec0d35d4e42bcaf038fe0fc30c88c authored about 7 years ago by jpfeuffer <[email protected]>

Merge pull request #29 from jpfeuffer/feature/Restructure

Restructuring of the repository

477a49c7ca92a3fbe98fdc8848d7b331ca8cf594 authored about 7 years ago by chahuistle <[email protected]>

Dependency cleanup, plus better error handling in mzML importer.

1e435492be09863442462c5a5b2b973cec5dbe45 authored about 7 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #28 from genericworkflownodes/fix/startup-look-for-VC14

Forgot slash in Registry query looking for VC14

64c4ffe6c8d9180a190d6bd2ef5bc50aefb5cc6b authored about 7 years ago by jpfeuffer <[email protected]>

Forgot slash in Registry query looking for VC14

24ab9f8b7c69e4a0ccd9017cb0e66491ac31a93b authored about 7 years ago by jpfeuffer <[email protected]>

Merge pull request #27 from genericworkflownodes/fix/prereqVC14

Update prerequisites check for OpenMS 2.3

7473dffb3706e1bdfe78b76f7834069eeabca388 authored over 7 years ago by jpfeuffer <[email protected]>

Update prerequisites check for OpenMS 2.3

Needs VCRedist14 now

b33495d11f5cd4961914416fceadb7331138aead authored over 7 years ago by jpfeuffer <[email protected]>

Merge pull request #23 from jpfeuffer/feature/mzMLDemanglers

[Dependencies] for jMzML. git ignored them

50f140328b0765237ad68079e39bdf110bc8bca6 authored over 7 years ago by jpfeuffer <[email protected]>

git ignored the dependencies.. what is wrong with the gitignore?

9cea0c482eb347dff10c358388a3313d5147c157 authored over 7 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #22 from jpfeuffer/feature/mzMLDemanglers

Added missing .project file. Made knime version not so strict.

40d49fc5e596ece56def39d7caa9e8e2033938dc authored over 7 years ago by jpfeuffer <[email protected]>

Added missing .project file. Made knime version not so strict.

a3bdf709b316907e168690ba3ac9240b3363dccf authored over 7 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #21 from jpfeuffer/feature/mzMLDemanglers

Added mzML Demanglers from @alexanderfillbrunn.

838cbae8ddd7897990a61a06a08dd77ccee7dbff authored over 7 years ago by jpfeuffer <[email protected]>

Adapted dependencies a little bit.

3818d50191fc94dc063c6e60a76dc88615b8146d authored over 7 years ago by Julianus Pfeuffer <[email protected]>

Added mzML Demanglers from @alexanderfillbrunn.

1b62c372e2df48c5e53ee7f2458039f91f84d8cd authored over 7 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #20 from jpfeuffer/feature/addUpdateSiteFeature

[Feature] Add update site feature

4212a805a881946447f7882885cad85284ea7edf authored almost 8 years ago by jpfeuffer <[email protected]>

Removed hidden svn files

0d8c7e0269af09dde2b1dfa243e6956d649c9450 authored almost 8 years ago by Julianus Pfeuffer <[email protected]>

Added feature to create an update site that we previously copied from KNIME

335a334f7224e5193b561fa8eeb0fd383b9f50e5 authored almost 8 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #15 from jpfeuffer/feature/mzTabLegacyMissingVals

Feature/mz tab legacy missing vals

5ed2b7aa7a34e7d2a0c74fff88dec3e5a5a20044 authored almost 8 years ago by jpfeuffer <[email protected]>

Merge branch 'develop' of https://github.com/genericworkflownodes/de.openms.knime into develop

58ff7fe176fa6bec425f232bc43eb68fd25ffa87 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Supporting a hyphen as missing value in number columns. Dont know if this is legacy behaviour or in the standard. But we are supporting - and null now. There should be no disadvantage.

aac4f1645f41084ba81f6599bb8a0487748a97b7 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #11 from jpfeuffer/develop

Added support for non-SMS column types

cc9005c739efed3994dc32ce4623baab91c89422 authored almost 9 years ago by Timo Sachsenberg <[email protected]>

Corrected handling of bools. Now trims all header fields first. Generalized search_engine_score pattern.

f123983cd252912758ceeb8229ea295491edd3d8 authored almost 9 years ago by Julianus Pfeuffer <[email protected]>

Added support for more col types

Column types of sections other than small molecules were added.

9454f3c5e52b59fe5c780f169d94619b3720f7da authored almost 9 years ago by jpfeuffer <[email protected]>

Merge pull request #1 from genericworkflownodes/develop

?

3421c0880bbd054f0588d0d94afb6bd2fa735afc authored almost 9 years ago by jpfeuffer <[email protected]>

Merge pull request #7 from epoyraz/develop

Add Support for Protein Section, Peptide Section and PSM Section

ac89cf83d556229b495b91e1a80d1a7e13feb7d3 authored almost 9 years ago by Timo Sachsenberg <[email protected]>

update Style, add createEmptySpec ( Empty Table )

0f5e58bc7dfe7d6e9bacbee9261f0f3189f0f7db authored almost 9 years ago by epoyraz <[email protected]>

Merge remote-tracking branch 'refs/remotes/genericworkflownodes/develop' into develop

88be652ffc632decbc537e8ba389fbe4bb726773 authored almost 9 years ago by epoyraz <[email protected]>

Changed manifests to support KNIME 3.x

71a8ff0609777b684671c079610377f729b67aef authored about 9 years ago by jpfeuffer <[email protected]>

Add Support for Protein Section, Peptide Section and PSM Section

5b1843f1865887484a3fe7d9ef408e805a933455 authored about 9 years ago by epoyraz <[email protected]>

Merge pull request #2 from FabianAicheler/patch-1

Update README.md to include current Knime Nightly build link

b31e473d3d69d1b0aabeeb69dae1fc8d95729600 authored about 9 years ago by Stephan Aiche <[email protected]>

Merge pull request #6 from hannesveit/feature/id-text-reader

Feature/id text reader

928fa7b9a13c8013b52d456917ac72c612cf6df9 authored over 9 years ago by Timo Sachsenberg <[email protected]>

[FIX] bugs in IDTextReader node

f84ee8a18aa474cc1b125fe24c150f8948684a9e authored over 9 years ago by Johannes Veit <[email protected]>

[FIX] IDTextReader node I/O specs and description

f6db7a66f5e7c862d41596404747e36302377138 authored over 9 years ago by Johannes Veit <[email protected]>

[FEATURE] added IDTextReader node

d6536aa00dd6d20fc51b04d6216b0886f8cbf518 authored over 9 years ago by Johannes Veit <[email protected]>

Merge pull request #3 from jpfeuffer/fix/win32_registrykey

[FIX] fixes problems with win32 not finding VSRedist

8e7e854638a9f7fbe880997304c7f2226ecbd21a authored over 9 years ago by Stephan Aiche <[email protected]>

Correct indentation

d6507eabfb165c304cf94ff62d275ce4ea02f83b authored over 9 years ago by jpfeuffer <[email protected]>

To be more safe I included the old registry as an alternative to look for.

e21995656e567f8072fdcdac9e18cdc03ef7f175 authored over 9 years ago by jpfeuffer <[email protected]>