github.com/OpenMS/OpenMS-1 commits | Ecosyste.ms: OpenCollective

Fix docstrings

4e41abd4a49052549aa9f4547fb8ed1bd534b14d authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #6394 from OpenMS/win_install_fixes

Win install fixes

0d54c0f29309e60a729aa9b819a5f9a76315a645 authored about 2 years ago by Samuel Wein <[email protected]>

Merge branch 'develop' into win_install_fixes

0fe7b9a96a23f7cf902933d91c660bb4ec8eb285 authored about 2 years ago by Samuel Wein <[email protected]>

more fixes

7a70dc3c49c0aa9207e50a8adc6425a73596ab76 authored about 2 years ago by bielow <[email protected]>

[feature] enable 3' cyclophosphate as a RNA mod

93e5cbf3640194bedb8f0bb4a378cdb36984b301 authored about 2 years ago by Samuel Wein <[email protected]>

[fix] remove trailing slash in nsis builder

d38393251707d4329d0a74492212ac0bfb840fe5 authored about 2 years ago by Samuel Wein <[email protected]>

Add default to be compatible

1d08aa229fad8b4c2d666ddcd8a8958e1c852ef0 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

fix interface for new autowrap version

6feb5a88aaa790de65cf21fed2ade216f52e9389 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

support newest autowrap

c1f258367453b2f2e9151bc624cb2a6d910812fc authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update CMakeLists.txt

f1711f1fb590eb04329911dba57230fa7c05bf46 authored about 2 years ago by Samuel Wein <[email protected]>

Update NSIS.template.in

12a4f5e6656f257036191170966699c36414fa89 authored about 2 years ago by Samuel Wein <[email protected]>

[fix] correct plugins dir for qt, copy over qt.conf

8bf7e77012343b4184471013b89d8b38c148657b authored about 2 years ago by Samuel Wein <[email protected]>

[fix] fix destination folder for qsqlite

da7bdb92853308a4e2576a429f53213bd2b64f21 authored about 2 years ago by Samuel Wein <[email protected]>

[FIX] Fixed CMake error where user set VC_REDIST_EXE was ignored

5197259e4b4379037480d72702dc0b5b6a103b1f authored about 2 years ago by Samuel Wein <[email protected]>

[fix] add qsqlite dll to cmake list

8e48e2c4dfd916fb8af0f28c3c8c3dfb7a0c380f authored about 2 years ago by Samuel Wein <[email protected]>

fix compile errors/warnings

5bf78ab6c418ae1d020bd613e10318f2c86b251a authored about 2 years ago by bielow <[email protected]>

fix more compile errors

dc7f293ad7900347e0ef27caa53a3e985f34cd46 authored about 2 years ago by bielow <[email protected]>

Merge branch 'refact_toppview' of https://github.com/cbielow/OpenMS into refact_toppview

f4278aca07c8eabac2638d6d6750d9179526d0a9 authored about 2 years ago by bielow <[email protected]>

fix compile errors

3460829c6a3b46f6a1b85a165a689f275c67a9ed authored about 2 years ago by bielow <[email protected]>

write identifier in SSE

94e4e98610079140459be0be05658b8109e461bf authored about 2 years ago by timosachsenberg <[email protected]>

Merge branch 'develop' into refact_toppview

bfdc9a486d9291d5ed5d993fb605da40032455ed authored about 2 years ago by Chris Bielow <[email protected]>

make public member variables private

a5775c2d36f92fd3395da26f1decbfeca2415174 authored about 2 years ago by axelwalter <[email protected]>

Update src/pyOpenMS/pxds/FeatureFinderAlgorithmMetaboIdent.pxd

Co-authored-by: Timo Sachsenberg <[email protected]>

00ea1df1c04f6e0e74ed926e0b6973e8f61b456a authored about 2 years ago by axelwalter <[email protected]>

Update src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMetaboIdent.h

Co-authored-by: Timo Sachsenberg <[email protected]>

c74ec21758983eb51f2495dd603a0a4f5c1d3392 authored about 2 years ago by axelwalter <[email protected]>

Merge branch 'develop' into fix/FFMI_segfault

1b374799685dbb9adf48405be814967bf2c76cd7 authored about 2 years ago by Samuel Wein <[email protected]>

Update package_deb.cmake

94ec9af36b31f67a85ac7ae4c50ec8d6d00f24a9 authored about 2 years ago by Samuel Wein <[email protected]>

add getters for FFMIDCompound attributes

3ee63b3757aa0af3d1408e2bdfe10db5a3ea2872 authored about 2 years ago by axelwalter <[email protected]>

Fix deb dependencies for qsql

Add dependencies for qt5sql.

a6ab60af3c1114f7ddb2af9a5a4a1f1567d9da5b authored about 2 years ago by Samuel Wein <[email protected]>

gitpod yml fixes/cleanup

93625e74fee8dea5e3722d7660836a0947e40158 authored about 2 years ago by jpfeuffer <[email protected]>

missing extensions gitpod

a52698cae352a50c110999fd7795a3e2575a82f1 authored about 2 years ago by jpfeuffer <[email protected]>

Try to trigger gitpod rebuild

60b56dc00ea243a08cd99a94b90f63dab897d61a authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update .gitpod.Dockerfile

11e7705d748d7d7ee6dfa12c2dfffea006919bf8 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

try to fix link in pyopenms special docstring

cf459cd9c3fb9b77ba3472df5545b484b8136a13 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #6379 from cbielow/fix_doc22

[DOC] fixes

17063929f01304a15d5f77dd016e2686cfd2e197 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #6384 from jpfeuffer/upd/submodules2

update contrib

b787c7c8d03a8df94940089d188c99cd50a8e34e authored about 2 years ago by Julianus Pfeuffer <[email protected]>

update contrib

339e0b52aab0714c36849c59ed0d560294ca44e6 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #6264 from vrossow/maxquant-output

[FEATURE] support initial msms.txt MaxQuant output

510595e4fffc27f8f9b5e593a19ed8c86677f7b6 authored about 2 years ago by Chris Bielow <[email protected]>

[feature] updated Modomics.tsv to include standard thiol bases.

7185e2b4609fee952d60f90e7aae6b9a6c2cf091 authored about 2 years ago by Samuel Wein <[email protected]>

Merge branch 'develop' into fix_doc22

0d69188e6ae6f1cbbcf6f90993b8eb3d1759ad4b authored about 2 years ago by Chris Bielow <[email protected]>

Merge branch 'fix_doc22' of https://github.com/cbielow/OpenMS into fix_doc22

ec6a1736b7e3f968b584c13ac6eaf3d889e5ad75 authored about 2 years ago by bielow <[email protected]>

prevent line breaks within words in blocks of <code>

c692da31063a3417bc55966743216b2fe49c71f6 authored about 2 years ago by bielow <[email protected]>

Merge pull request #6380 from jpfeuffer/upd/submodules

update submodules

1bfec7e92e91f3e5a8b58b902488f478909a2830 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

update submodules

7b5e4491173e8a0aeecb3d9dc7f6f918e80f14c8 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update FeatureFinderMetaboIdent.cpp

a0862065f6af5647a01331aeb58b7cb2dc3e64c9 authored about 2 years ago by Timo Sachsenberg <[email protected]>

Update FeatureFinderMetaboIdent.cpp

43753a9944ca98262918f4703b2557ffe2e9f9a8 authored about 2 years ago by Timo Sachsenberg <[email protected]>

Update FeatureFinderAlgorithmMetaboIdent.cpp

c26bf001445909d995a7525ad45a39fd8829ecb6 authored about 2 years ago by Timo Sachsenberg <[email protected]>

[fix] add override option for FeatureFinderMetaboIdent. Added printing of filename in FeatureFinderAlgorithmMetaboIdent in warning

c01096427094fcad9500328fbbf633ece7c00de9 authored about 2 years ago by Samuel Wein <[email protected]>

Merge branch 'develop' into feature/new_thiols

868b3c6939c03ab67f3272de6f3cfbef6020a7fa authored about 2 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'develop' into fix_doc22

41eea7f66fcd784459b3c5d74fa3ec315368e1d3 authored about 2 years ago by Chris Bielow <[email protected]>

fix API docs

64eef4fd50650e9cad3fcec2a6586396d39f58ef authored about 2 years ago by bielow <[email protected]>

fix documention errors (links etc)

e952c043a81a575c16e7101c49691e053a70da44 authored about 2 years ago by bielow <[email protected]>

fix mangled output due to misaligned section

0e63535b614a98b4d7cb35408a844795fe97e7c3 authored about 2 years ago by bielow <[email protected]>

Merge pull request #6362 from OpenMS/jpfeuffer-patch-1

[FIX] only use TARGET_RUNTIME_DLLs on WIN32 otherwise its empty

032b6e59af17137a37ce40e93623e8564348b926 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

[fix] added warning when trying to run FeatureFinderAlgorithmMetaboIdent with data that has no MS1 scans. Run function just returns input map in this case.

2e242f378915864a3b28b0680941fadd40b431e3 authored about 2 years ago by Samuel Wein <[email protected]>

remove section with same name in coding-conventions.doxygen

beeb249d88f9e1018c9f8a83c7430f8852f19366 authored about 2 years ago by bielow <[email protected]>

remove duplicate section

c9112da38565e08ad37885c0255e5b1d8c445bde authored about 2 years ago by bielow <[email protected]>

doxygen does not support <nobr>

d850a394935b2d78666ce78253e3daf94e7dd382 authored about 2 years ago by bielow <[email protected]>

Merge branch 'develop' of https://github.com/OpenMS/OpenMS into refact_toppview

# Conflicts:
# src/openms/include/OpenMS/KERNEL/DimMapper.h

4af56c07896a74c20a54e94a30fdf42f9d0dc678 authored about 2 years ago by bielow <[email protected]>

Merge branch 'develop' into fix/FFMI_segfault

8796a5e81b4f735f6abd187005daf44e7cee1756 authored about 2 years ago by Samuel Wein <[email protected]>

[fix] fix segfault when passing data with no MS1 scans

40c33ec25753a9879d7371dd58a6bea7e4685f3b authored about 2 years ago by Samuel Wein <[email protected]>

Merge branch 'develop' into maxquant-output

9f6d37bfacc8fa72c446b9e1b501dd742ae14a09 authored about 2 years ago by Chris Bielow <[email protected]>

Merge pull request #6370 from OpenMS/upd/WM5toGTE

[UPD] WM5 to GTE and include headers

e597d7950d4558d44951b2d20465660de6c15d88 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge branch 'develop' into maxquant-output

cd03c063ca18c39a644f4ba03cb52934b10ddf90 authored about 2 years ago by Chris Bielow <[email protected]>

add template to init list

61691d921b5c966edcfdeafb3254fd6b4214957c authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge branch 'develop' into upd/WM5toGTE

a37e018bdd757a1a68c3c341981982a14bd1aae7 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #6371 from OpenMS/fix/glpkRealOptional

[Deps] make GLPK really optional

4cb1010d49a0e3c38afc45dbd20663bdea8e6c22 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update cmake/cmake_findExternalLibs.cmake

09686e6ac61c01618129ae84504bf6832a50d824 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge branch 'develop' into upd/WM5toGTE

fd4242205cd40aa68aa4c1145e360d48597202d3 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update CMakeLists.txt

17f7ce72dab4784ab571c621f9889c69710e55dd authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update cmake_findExternalLibs.cmake

ebabcc897dcfebd3116431a27d297ed9f69b7ba7 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

[Deps] make GLPK really optional

c5f620d646b8ae10b14ba428d28540d1a76c9213 authored about 2 years ago by jpfeuffer <[email protected]>

[UPD] WM5 to GTE and include headers

8ba08da2e15d6b3f04446291f3f6778b80a176f1 authored about 2 years ago by jpfeuffer <[email protected]>

Merge branch 'develop' into fix-docstrings-2

1d852d2abc77215e3288ee8dda7ce6bb1073ce69 authored about 2 years ago by Rahul Agrawal <[email protected]>

fixing docstrings

8ab2517e4106782968cb8ba8881cf46fa5f6bd32 authored about 2 years ago by rahul799 <[email protected]>

Update .gitpod.Dockerfile

33c808614cde6fae086cfacb0403d3d8119cce7b authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Create GitHub readable license file. (#6366)

2ca59aba1a8699f57dd9d5f31197bb8ccbd7efc4 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

fix :returns

ccd3c96383a1e2a03240a53cd3a6f23e829da20c authored about 2 years ago by rahul799 <[email protected]>

limit original spec size. implmented well.

74cfe2dac0063764e73b86691af307bacee44ac2 authored about 2 years ago by kyowonjeong <[email protected]>

fix-2

b1f5417d5caf2223dcc06417c6bfc95099583cb6 authored about 2 years ago by rahul799 <[email protected]>

Removing "Parameter heading"

4c7246ffa2cd185f152470147626d0d7b6e5ab28 authored about 2 years ago by rahul799 <[email protected]>

limit original spec size.

Implementation should be redone.

53336c26e093cb534eebb63aff53e2917ae924e7 authored about 2 years ago by kyowonjeong <[email protected]>

TopPIC frag masses are sorted by qscore when their count exceeds 500

de830d5179d57dc60202c29207edc3370bcd133e authored about 2 years ago by kyowonjeong <[email protected]>

TopPIC frag masses are sorted by qscore when their count exceeds 500

b6ed18b3021acd019763225a816c62efa25fcadb authored about 2 years ago by kyowonjeong <[email protected]>

TopPIC frag masses are sorted by qscore when their count exceeds 500

64718a85c3c2ca68d7d4e0270f5564759e52d940 authored about 2 years ago by kyowonjeong <[email protected]>

TopPIC frag masses are sorted by qscore when their count exceeds 500

4775e234f1cac15b254eb51bafe02590c6740b81 authored about 2 years ago by kyowonjeong <[email protected]>

missing occurences

412a948f92c1340f29efbde98c48f4d4ea883f59 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

underscores in cmake

986d39b0866785353f8a5f75689124fcf2e99eda authored about 2 years ago by Julianus Pfeuffer <[email protected]>

missing underscore

568ad8480e478c8d89576efd22af1b994a47e2be authored about 2 years ago by Julianus Pfeuffer <[email protected]>

TopPIC frag masses are sorted by qscore when their count exceeds 500

11214b8ca84cb9ce62d2ff3f612e2b4bb9d592f5 authored about 2 years ago by kyowonjeong <[email protected]>

[PYOPENMS] cleanup interfaces

228c6e9dc61f412d0a741a4880b500b4dd23e073 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

only use TARGET_RUNTIME_DLLs on WIN32 otherwise its empty

a111ef58bc772e84e5b0a7bef4f0e57e2bb7d887 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge remote-tracking branch 'remote/fix-docstrings' into fix-docstrings

4272d40449bfceb47d6fac92d76a06fd20af4fea authored about 2 years ago by rahul799 <[email protected]>

fix

e2c0bc959e6a739204146bd5cf415034d5abbd1a authored about 2 years ago by rahul799 <[email protected]>

Parameters added

bf17c7eff28706463769c5a196eb133463d44a3b authored about 2 years ago by rahul799 <[email protected]>

Merge branch 'develop' into fix-docstrings

1ab7b7b0f2cfe596c849e26fa7ecb995fd5fc87a authored about 2 years ago by Rahul Agrawal <[email protected]>

Merge pull request #6360 from OpenMS/nightly

Update pyopenms-wheels.yml

e1aed809e067e6ffc4cae2b7988eb2fff7ccb8f3 authored about 2 years ago by Samuel Wein <[email protected]>

fixing docstrings

4c358697714ed57b356c9c7c727971aa2865405b authored about 2 years ago by rahul799 <[email protected]>

Update pyopenms-wheels.yml

[fix] fix nightly repo url

531cea668655fddacf9559656f12f80171a8a255 authored about 2 years ago by Samuel Wein <[email protected]>

[Feature] MetaboliteSpectralMatcher optional spectra merging and export of native spectrum IDs (#6349)

* MSM parameter for optional merging of spectra

* add optional output of merged spectra as mz...

d3863c4dbbe9b873ab98408dd14b58a0f89baa7a authored about 2 years ago by axelwalter <[email protected]>

TopPIC frag masses are sorted by qscore when their count exceeds 500

e27101065c23cfc9c542a5b9e7b932aae9f4b9fa authored about 2 years ago by kyowonjeong <[email protected]>