Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS-1

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS-1

TOPPView: fix selection and name of chromatograms (#6673)

* fix deprecation warning

* fix bug which leads to segfault when storing visible 1D spectra/c...

293755fd96d2f8da2c9abb988472282566ae82b2 authored over 1 year ago by Chris Bielow <[email protected]>
[FIX] Variable order in knime packaging

2342b8dc29c72ff55654519abb096de20e998bfb authored over 1 year ago by Julianus Pfeuffer <[email protected]>
use "de.openms" as knime plugin ID to be backwards-compatible

12987bb2b47f28bca6215c3bff3e33ecea300dc8 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
[FIX] All Zero MS1 Feature Scores (#6664)

* [FIX] empty MS1 Feature Scores

* [FIX] Remove unnecessary brackets

13b285e97ab7aeb32aeb297a72096b480e2a140d authored over 1 year ago by Justin Sing <[email protected]>
Merge pull request #6662 from poshul/fix/DPHD_fix

[fix] added missing includes

be2814f4cb9cb0d69641537166f9cc8b9ec9b450 authored over 1 year ago by Samuel Wein <[email protected]>
[fix] added missing includes

3de724127d083b7f8133f5b41a248419161a5a03 authored over 1 year ago by Samuel Wein <[email protected]>
No prebuilds until we decide what to do with gitpod

2c846986462a47157cbd3cc93d9fad80fc6c3f96 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6660 from matteopilz/develop

[Fix] pyOpenMS Plotting Documentation Errors & Warnings

427e582860006be06b1e86652cc4c9a352df9f97 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
adapted function docstrings to sphinx format

1ea7504835bfe20e42e555ec774249bcf21aab08 authored over 1 year ago by matteopilz <[email protected]>
Merge remote-tracking branch 'matteo/develop' into develop

911edec445e11088129e2e84849717bf9e34210a authored over 1 year ago by matteopilz <[email protected]>
adapted function docstrings to sphinx format

827c96b8281982caba4bef67231c9522f4db7875 authored over 1 year ago by matteopilz <[email protected]>
Merge branch 'OpenMS:develop' into develop

f90005f999ff0ab0e09eb379178b8d418d2c3d6b authored over 1 year ago by Matteo Pilz <[email protected]>
testing module docstring

beab4d43500a26ff55f4488a25e19c45ae33cda2 authored over 1 year ago by matteopilz <[email protected]>
testing module docstring

ccaf3827471e9bd395d33f9a1c8c4bf8338fb318 authored over 1 year ago by matteopilz <[email protected]>
Merge pull request #6466 from AmandaWein/patch1

Updated DefaultParamHandlerDocumenter.cpp

599a0832fec1d5a421624cebaf05b73cb2027763 authored over 1 year ago by Samuel Wein <[email protected]>
Output FAIMS information in FileInfo (#6640)

* Add files via upload

* output FAIMS CVs in FileInfo

* add FAIMS output test

* only ou...

828ef952d2f2281ebd4a85b19a4a57c6f5339bc4 authored over 1 year ago by Timo Sachsenberg <[email protected]>
return mutable peptide sequence (#6644)

613f34359d8ccfc1a4669c3fbfdccfec4a9e4d34 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Fix TOPPView 1d store bug and some warnings (#6641)

* fix deprecation warning

* fix bug which leads to segfault when storing visible 1D spectra/c...

a1213b93fa646e71d260771d78b7f918587dd60e authored over 1 year ago by Chris Bielow <[email protected]>
testing module docstring

c49123015861ad5e1383446e995b31e2426b94fa authored over 1 year ago by matteopilz <[email protected]>
testing module docstring

9f9217adc33c139566d8f058f8174da0732873c9 authored over 1 year ago by matteopilz <[email protected]>
Merge pull request #6645 from OpenMS/revert-6615-jpfeuffer-patch-1

Revert "fixes #6614"

7531454cd5255de98dd5c5e0ad4d42fc7662aa35 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Revert "fixes #6614"

53824c4c66748448bfd76267d16d3332b91a5c2a authored over 1 year ago by Samuel Wein <[email protected]>
testing module docstring

274f7c3d8f4fa49d6943616c7ead42d2b11cc015 authored over 1 year ago by matteopilz <[email protected]>
testing module docstring

e568feed73182677ac8850e14b6dc6cbc909faa4 authored over 1 year ago by matteopilz <[email protected]>
Merge pull request #6632 from cbielow/fix_doubleparam

Fix duplicated parameters

6fe12cf05b207e53ec5c0bcb912b7809bfa16612 authored over 1 year ago by Chris Bielow <[email protected]>
Merge remote-tracking branch 'matteo/develop' into develop

dbedf4ef1b13a43ce7f98efe05522beffb44ca03 authored over 1 year ago by matteopilz <[email protected]>
testing module docstring

7d63fbbfddb437cb74320f702b279a0ebfeef931 authored over 1 year ago by matteopilz <[email protected]>
Merge branch 'OpenMS:develop' into develop

e04ccc95e7fa217d51ac00b6d05149290222cc05 authored over 1 year ago by Matteo Pilz <[email protected]>
Merge pull request #6615 from OpenMS/jpfeuffer-patch-1

fixes #6614

48bd8eb1428c5f0a0a88ffe96f105f0087a3930c authored over 1 year ago by Samuel Wein <[email protected]>
Apply suggestions from code review

Co-authored-by: Julianus Pfeuffer <[email protected]>

f4b6654ce9cc4688024b3596136b983a5b8b784e authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' of https://github.com/matteopilz/OpenMS into develop

c5f070cb715eac78db4b5e9f08e2fba240700dc9 authored over 1 year ago by matteopilz <[email protected]>
Merge branch 'OpenMS:develop' into develop

78f4f755d546a7d30c18b8f652e9fac470068a28 authored over 1 year ago by Matteo Pilz <[email protected]>
testing module docstring

2d49f49ac11b41df275fb106ed27f28849a18d86 authored over 1 year ago by matteopilz <[email protected]>
Merge pull request #6635 from jpfeuffer/feat/splitKNIMEpkg

[KNIME] Split KNIME plugins into TOPP, lib and thirdparty

aa37d393474379a47774537f1b0435285936a62d authored over 1 year ago by Samuel Wein <[email protected]>
testing module docstring

c836865e990662affeba1d2e635584deed78756e authored over 1 year ago by matteopilz <[email protected]>
Merge pull request #6627 from OpenMS/fix/wininstAllUserNoDocs

[FIX] WinInstaller Default Alluser and no docs

979fa3bcdf5c62e8c03a3d5965c07706b648cefe authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into fix_doubleparam

455f0963245e64250c227493906950e85525522b authored over 1 year ago by Chris Bielow <[email protected]>
fix test

05892d354bfad5332a2854c9a62b597dbba99dee authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #6634 from OpenMS/timosachsenberg/file-download-broken-6633

use http in test

91f0d45b759bd2ce2ea2bc5982af6dea11f8f815 authored over 1 year ago by Chris Bielow <[email protected]>
small fix and comments

fd26556d3130e64844ebfd7d7f887d878e6cba36 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
rewording

a8304ca9753e25bb89d36766a6724e0a47fcf8ad authored over 1 year ago by Julianus Pfeuffer <[email protected]>
First working version of the split

41b87142968b19293b9a7903b6893807e7323cb1 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
switch to http (because SSL might not be compiled into qt)

ff77847c1390b6885e4a5e553cdc1a40b31bb43b authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6630 from OpenMS/fix_cibuild_exit_code

Update cibuild.cmake

b5044cdda21bc01a78a46ad2c4e7e21ccf32e510 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update citest.cmake

89d6df70cc2723e2456588cbdd925079545eadb7 authored over 1 year ago by Timo Sachsenberg <[email protected]>
remove duplicated flag

7e2822c9393be29649658ac8c39c7117caa8c941 authored over 1 year ago by Chris Bielow <[email protected]>
remove duplicated flag/option 'post_processing_tdc'

a9f7f0cfb11947cbac5ef55e1d98051a5087b6b0 authored over 1 year ago by Chris Bielow <[email protected]>
modernize a bit

3b614c7522ed89f7196f4f64dbb5c4ac0b6d1cec authored over 1 year ago by Chris Bielow <[email protected]>
remove duplicate parameter from FFMetabo

d4a0c7e338a3c328abdfaf172fece19c1b3a4ab0 authored over 1 year ago by Chris Bielow <[email protected]>
format

d14c62667cac19c48bedd19259f65c3e0c994331 authored over 1 year ago by Chris Bielow <[email protected]>
add for test

2e334b47d79cc23faccbf0e1185de72a7856da19 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update cibuild.cmake

da3ac232080c83e58175bdcb9f326364457da9ef authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6612 from OpenMS/feature/QuadtreeFeatureOverlapFilter

* [FEATURE] Add a filter class that can filter FeatureMaps on overlaps

* Replace the FFMID O(...

346646db051985f2af038be241aa51bbfd52b1f8 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into jpfeuffer-patch-1

85a44567d0d6a169aa92b0799473e20835280361 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6620 from cbielow/fix_warnings

Fix compile warnings

2dbfcf7b1e0984f1790ea998ed0775face218d66 authored over 1 year ago by Chris Bielow <[email protected]>
fix more warnings for implicitly deleted functions

c5bcf0537b5c3b2dfdff4f448152c5364b12c58f authored over 1 year ago by Chris Bielow <[email protected]>
minor docs

01152836aa164284922cf5e97771915c18cd3eb5 authored over 1 year ago by Chris Bielow <[email protected]>
make dtor virtual

e0436744850f110ed5913bfcaafecb41f9e09cc6 authored over 1 year ago by Chris Bielow <[email protected]>
fix non-virtual desctructor warning

72eae325450a64fe1daa65afd52bd93484561655 authored over 1 year ago by Chris Bielow <[email protected]>
fix binned spectrum test

c3935c4593af8bacf2e38cb4ae66bb6177b22af3 authored over 1 year ago by Chris Bielow <[email protected]>
fix compile error

e6be7f29e3cf16ffa88c2c0b0b305ed8b56336ae authored over 1 year ago by Chris Bielow <[email protected]>
[FIX] WinInstaller Default Alluser and no docs

7cd656e65a02c36722685d995548ac98c5168dc4 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
[CI] remove Win parallel limit on GH actions (#6623)

After test memory usage was fixed

475270c90926c50a91961ead6aadd22014ebb011 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fix last test

82d72a75ce32c4f0b4bc242b7292a0c307a8a0e8 authored over 1 year ago by Timo Sachsenberg <[email protected]>
attempt to make sorting stable

271147ae136f55e6bb2f709de12578fd77a6c255 authored over 1 year ago by Timo Sachsenberg <[email protected]>
add another default for the feature comparator

574514a2d76b210f278ddcd65a539887a967f188 authored over 1 year ago by Timo Sachsenberg <[email protected]>
annotate removed by overlap

bbdf2e00e848d0282fa02ad21f4c12ae7fd6f790 authored over 1 year ago by Timo Sachsenberg <[email protected]>
add back information on ambigious ids

4c5e79edd833ffd58cda0f88d199ae325ee75a24 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/QuadtreeFeatureOverlapFilter

c6f8aefa6aaaf8099e1b9871b670a03561026592 authored over 1 year ago by Timo Sachsenberg <[email protected]>
additional test data to generate overlap cases (#6622)

0b1312c88c84eff367c1946dfa0547206fce3be9 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/QuadtreeFeatureOverlapFilter

31a8d34b03a95a11e9e7fb5dbc4162090b73f672 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Replace the FFMID O(n*n) overlap check with an efficient, quadtree-based approach (#6619)

* attempt to replace the FFMID overlap check

* produce same result as old method

* update ...

527e9b253672c1a98cc5565f893081d9d01fffc2 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6607 from matteopilz/develop

Update pyOpenMS plotting

341fc54d1e005cb80ff30ced6287b68332e18e1e authored over 1 year ago by Matteo Pilz <[email protected]>
Merge branch 'develop' into develop

61f8185efbb655554e90237f755d89c9f0a8cdb8 authored over 1 year ago by Matteo Pilz <[email protected]>
start splitting knime package into folder struct with topp,tp,lib

26d0deb65012357bf4484ebab44dd86ea02c3e09 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
remove defaulted move ctor/assignment because they are deleted in the base class for correctness (diamond + double move problem)

e15382feee195b6be5bcb177fafade245c2f11d4 authored over 1 year ago by Chris Bielow <[email protected]>
fix conversion warnings

f79f553d9e52ef66a0acdb38794c76c315b29d9a authored over 1 year ago by Chris Bielow <[email protected]>
fix warning "-Wbitwise-instead-of-logical"

d191a9e5f2d72bd0145be30a190e9e75556ecbf9 authored over 1 year ago by Chris Bielow <[email protected]>
fix conversion warning

c3516abab6ae5e044d7585f9a4e7e11a965c3902 authored over 1 year ago by Chris Bielow <[email protected]>
fix uninitialized warning

7480a381908f1e2e8c96e73c0653af93343d7a58 authored over 1 year ago by Chris Bielow <[email protected]>
fix conversion warning

da6d2f74fe663bd7762db77029b273baf108ebb1 authored over 1 year ago by Chris Bielow <[email protected]>
minor

64c3bf6f19fd3c95b9946c80d6baa92775d7cffc authored over 1 year ago by Chris Bielow <[email protected]>
TOPPView: fixes 3D view zooming (#6616)

* remove useless overrides

* make goto-dialog independent of axis mapping

* simpification
...

5588117a027d0ea563f631332a12a16b0e3370b5 authored over 1 year ago by Chris Bielow <[email protected]>
Apply suggestions from code review

2205ecd5adc57ebef98e36321f914b10c5b2c86f authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #6477 from poshul/fix/revertTransformWrapping

reverted commenting on getDefaultParameter

b597256aa8b9be766b09b81a90ff2b5e0c76639e authored over 1 year ago by Samuel Wein <[email protected]>
Merge branch 'develop' into fix/revertTransformWrapping

0ce2597f3fbb81693f3afe7b771d56310a1aa43a authored over 1 year ago by Samuel Wein <[email protected]>
Merge pull request #6618 from cbielow/fix_classtest_RAM

Huge test compilation improvement

9c8fcb880ef8f01716c9947211d023ff1de06932 authored over 1 year ago by Chris Bielow <[email protected]>
move code from macro to function; this saves a LOT of intermediate code when compiling; thus uses way less RAM and compiles much faster.

ef5a5d95211b11fbc70fbe62ec3f1a6ea125f888 authored over 1 year ago by Chris Bielow <[email protected]>
added module docstring

e75d8e1075bc895d875b72efc783cca8f878a997 authored over 1 year ago by matteopilz <[email protected]>
Merge branch 'OpenMS:develop' into develop

3e1dcf73a593e765166214b1ee23a09c4b9a1676 authored over 1 year ago by Matteo Pilz <[email protected]>
[pyOpenMS] simple helper to update scores from a previously exported dataframe (#6613)

* pyopenms update scores from dataframe e.g. for ML

* update tests

* fix tests

* Update...

1f3aeb409997b009936e75e49683a8e0c5dfb1bc authored over 1 year ago by Timo Sachsenberg <[email protected]>
fixes #6614

23bfae5b70ff389a4281f8132deb1b83de7214d4 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into develop

e2000939d6a71c15e66feeb678ceb0cc6ef7e08c authored over 1 year ago by Timo Sachsenberg <[email protected]>
disable some scores not used for MS1 transitions; set max iterations … (#6608)

* disable some scores not used for MS1 transitions; set max iterations for faster EMG fits

* ...

f57a12e1103af6a94b4999e797a5306c1da55940 authored over 1 year ago by Timo Sachsenberg <[email protected]>
[FEATURE] Add a filter class that can filter FeatureMaps on overlaps

ddfdebfeb3feb298f492f294481e0da84166c53d authored over 1 year ago by jpfeuffer <[email protected]>
Merge branch 'develop' into fix/revertTransformWrapping

13d13a5bddb8ed131d43b9c9229b4ae2bab934f1 authored over 1 year ago by Samuel Wein <[email protected]>
disable update check on gh actions

f60393791f05f4e9dc6d8bc1035aa9a7882ff873 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update plotting.py

removed leftover #

6793e7f44d9001917585e3ab9c343b221816b1a1 authored almost 2 years ago by Matteo Pilz <[email protected]>
Merge branch 'OpenMS:develop' into develop

65beb0527d18663dacfa944b364ba7c67de644ca authored almost 2 years ago by Matteo Pilz <[email protected]>
alignment parameter - top & bottom spectrum needed to be switched

df419b59823346e739ccf60f1f1a89256fa702fe authored almost 2 years ago by matteopilz <[email protected]>