Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS-1

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS-1

Merge branch 'develop' into feature/clang_modernize

7a0370ea27ff1f3ec33f463d2d036e9448749078 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update TOPPView.cpp

8385ab205dd3176634b09de4d91d438e1f376cb0 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update TOPPView.cpp

c311bf42f9655c86c1e5861a1dec30595fb23296 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update TOPPView.cpp

8124b5adbb024034974e7206ae2b1037ba2c66bf authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6430 from OpenMS/fix/plfq_idconflict

pLFQ keep only best scoring ID per consensus feature

1ef10686cb905e43fb7548f1b5f1332a07c92383 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
update tests

86e0abd5a57e41f84c81c2075726bfe9ba957e30 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
pLFQ keep only best scoring ID per consensus feature

fixes a regression

401f316dca70a329a14a00c89b100710de4af620 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
DL encoding added and AVG PPM error bug fixed (minus plus compensated before)

8a2a9044e50253960af63ab742b69d013be8eb05 authored almost 2 years ago by KyowonJeong <[email protected]>
Merge branch 'develop' into feature/clang_modernize

8c64e8968356d9e7fa5c2c89cc05199f945ee06f authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6268 from jcharkow/feature/OswImCalibOutput

[FEATURE] [FIX] Support for Ion Mobility OpenSwath Calibration

ac715864a0385985af1eedc02d361641f08a2006 authored almost 2 years ago by Hannes Roest <[email protected]>
Update Exception.cpp

e51c131ceb7e9e094bf7432a7f140c56296625d8 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[NOP] fix whitespaces

e6a85b8eb8fe6d37b47296dd3f2f092682d66824 authored almost 2 years ago by jcharkow <[email protected]>
Update Exception.cpp

f9f086080344a27b24d4520e5b1c38ed6243b414 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
make parameters const references if possible (according to clang-tidy)

a18eb8d78f90bdd51c9f11892f7589b718185adc authored almost 2 years ago by Timo Sachsenberg <[email protected]>
apply some clang-tidy fixes

40e6b194a6d0d66daa2736c67af7bd63e4d1a39d authored almost 2 years ago by Timo Sachsenberg <[email protected]>
fix

cd0e472a7d96ded6d24a937cc9793e887fe725f0 authored almost 2 years ago by rahul799 <[email protected]>
Merge pull request #6357 from axelwalter/fix/sirius-uncompressed-output

[Fix] SiriusAdapter adaptations to Sirius 5

e3e9db61d16cd352cf6aff8eae4cb976b813eee9 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge branch 'develop' into fix/sirius-uncompressed-output

5673dd8d68af53e9016e2223c6a36a41ca07f242 authored almost 2 years ago by axelwalter <[email protected]>
update test descriptions

82edb5295a4d1baeaec42fa2305e43c6f445214b authored almost 2 years ago by axelwalter <[email protected]>
modify whitlists

- remove whitlisting all masses and adducts in test 1 and 3
- add one mass for test 8

f5a4ad17d8723b55eadfc2e68088c6b63d36525a authored almost 2 years ago by axelwalter <[email protected]>
Add basic phosphorothioate ribos to Custom_RNA_modifications

d9f9a333a7da8ce76267f9d56b4db290a37fe751 authored almost 2 years ago by Samuel Wein <[email protected]>
remove explicit definition of thiol's from Modomics, update changelog

a3240bbd34f22a1c17a20ce8d741e774bbe54670 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge branch 'develop' into feature/new_thiols

bc2d7888470f4a2349cae7d51e06fb7b1dafe0c8 authored almost 2 years ago by Samuel Wein <[email protected]>
use apple CI test files as reference

b686199e0f0131fcc544ad0b48c21405297a17f5 authored almost 2 years ago by axelwalter <[email protected]>
pyoms docs

8b571fd367e72e41a3828e909df004855d71a856 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Pyopenms docs

9ac412c949bfa9d109ebbba7b77a85f62980d52f authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feature/FLASHDeconvOnly

d942fda3bb948236dda2dceaa6f51b0d20d0c5e9 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6139 from cbielow/refact_toppview

Refactoring TOPPView

573987ebdf832aa2a4dfffb1db3525dbc552f238 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[DOC] small pyoms doc fixes

d58895066e65121e3afe873ad653ccb4105efa48 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6422 from cbielow/fix_vs2019_version

up the minimum required VS2019 version

a3ede1f44d0154553911e4118bce9b2ecc54139c authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6421 from jpfeuffer/upd/knimepkgplugins

restructure and fix knime packaging. mainly on macOS

3decf8a82974d0ad6b6141c901935489a65b948c authored almost 2 years ago by Samuel Wein <[email protected]>
update whitelists

0b7b34c3c7d71d6c2f9346b22c43d872d0102d1e authored almost 2 years ago by axelwalter <[email protected]>
Merge branch 'refact_toppview' of https://github.com/cbielow/OpenMS into refact_toppview

43cc55cf2cd4a16b454cb30f90db827f309d5676 authored almost 2 years ago by bielow <[email protected]>
fix warning (unused typedef)

6d04e20faa31f17708395261a412ef1ec976d911 authored almost 2 years ago by bielow <[email protected]>
whitelists for Ubuntu specific tests

9dfdd33f21830cb3e303c8e9464ee7af345d2fe4 authored almost 2 years ago by axelwalter <[email protected]>
up the minimum required VS2019 version

959c743e33ca98488658f830d06f4b4627b384c4 authored almost 2 years ago by bielow <[email protected]>
Merge branch 'refact_toppview' of https://github.com/cbielow/OpenMS into refact_toppview

8582a101cbae10da8cf5b866a85e6d4632cb31ef authored almost 2 years ago by bielow <[email protected]>
fix linker error

698c98c9828d23e4f47b17b87dc64d85f4362ef8 authored almost 2 years ago by bielow <[email protected]>
specify Linux as UNIX but not APPLE

e64480e3492e7ea78207ae0737063832202ce8c9 authored almost 2 years ago by axelwalter <[email protected]>
dbg msg

051a048920423ed06473496e0116291917c5015f authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
debug msg

daeb97fee8f895c900c758bcb9b733b5b110c78d authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
restructure and fix knime packaging. mainly on macOS. allow Qt built with RPATH (new default in brew). remove Resampler since it pulls in GUI libs.

cdcb131ec3c8f4090c23a8fa8e40e66ef0702f4a authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
check for OS Ubuntu in sirius tests

4276657e2886474f811861f49b41fba3132f6e02 authored almost 2 years ago by axelwalter <[email protected]>
test SiriusAdapter 8, 9 and 10 on Linux only

b630f6a8d4f8c9e0a1f35099d7d6006f89d18bcf authored almost 2 years ago by axelwalter <[email protected]>
reverted some changes to sirius related files that should not be on this branch

aa715b9c714a5e7081c1eff22246dfd2529e9ff0 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge branch 'OpenMS:develop' into feature/new_thiols

c43d6768dfdccf3a8b15c7d0d1185d726bfc90fb authored almost 2 years ago by Samuel Wein <[email protected]>
change OS name to UNIX

66fed11af3a03a1db12fc77aa8b94a8d71ebfe8e authored almost 2 years ago by axelwalter <[email protected]>
test SiriusAdapter 1 and 3 spec only on Linux

34720cf186a017a1f23413d22df9af03eb163509 authored almost 2 years ago by axelwalter <[email protected]>
add sum formulas again

0b19a1509ab97c10fc23da87f3e10cbbf0b2f5bc authored almost 2 years ago by axelwalter <[email protected]>
more whitelisting

78eb90d262d7d786febaa2ae812cd363d6378588 authored almost 2 years ago by axelwalter <[email protected]>
Merge branch 'develop' into refact_toppview

36c52d61db127322571bf7636c02ef4cd6b4d8fd authored almost 2 years ago by Timo Sachsenberg <[email protected]>
add more whitelist items

135258a4412230c4f1e2ba1a4ae36e305f4e3e9c authored almost 2 years ago by axelwalter <[email protected]>
Merge pull request #6420 from OpenMS/update/linux_buildinstructions

Update linux build instructions

5f8bfdb19cdcb1b8ed6e62d626a65883cdc1617c authored almost 2 years ago by Timo Sachsenberg <[email protected]>
sirius test whitelist updates

3e9c3ea8432189d42ddca22f0cc1efc773a1a048 authored almost 2 years ago by axelwalter <[email protected]>
Merge pull request #6415 from OpenMS/fix_mac_signing

Remove signing for mac dmgs, as it is broken

4a8835662d7f71290eea21c888c08772a702bc79 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6114 from hendrikweisser/idfile-json-export

JSON export for OMS (SQLite) files

961f4167ee0c25e7b954982e671e8c5bc9a974ec authored almost 2 years ago by Samuel Wein <[email protected]>
update sirius test whitelists

307b260dfca3a53e300c386175b3bf262cc14165 authored almost 2 years ago by axelwalter <[email protected]>
Update package_dragndrop_dmg.cmake

Try to keep pretty cpack

fe07d37af16f9828cc109f95414960e165f34abc authored almost 2 years ago by Samuel Wein <[email protected]>
Revert "Update package_dragndrop_dmg.cmake"

This reverts commit 9a96697c18f35b3923c361bc804ca47cbf76aa0b.

f92a2a7322e830d0013a80f095d6396444a93dcb authored almost 2 years ago by Samuel Wein <[email protected]>
Update install-linux.doxygen

b7b134c03b28ad10d723398796dc165c85d36f5b authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into idfile-json-export

da3106cb680b9926cd7d5149e8ada4c1de1525bc authored almost 2 years ago by Samuel Wein <[email protected]>
Update package_dragndrop_dmg.cmake

Remove unused parts

9a96697c18f35b3923c361bc804ca47cbf76aa0b authored almost 2 years ago by Samuel Wein <[email protected]>
Merge branch 'develop' into fix_mac_signing

06a5ae19b476ba5acb894c8dcf6891d8be182195 authored almost 2 years ago by Samuel Wein <[email protected]>
Update package_dragndrop_dmg.cmake

comment out signing behaviour

8bac6894a133bb3558259288211e5e73f3b73f22 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6416 from OpenMS/poshul-patch-1

Fix install-qt-action

051d6f90829b33051dcf4ee5a46020d5a8676801 authored almost 2 years ago by Samuel Wein <[email protected]>
Success in using libtorch inside FLASHDeconv.cpp

30ff7e85117de21f867eb34a9158c6465fb9d4ec authored almost 2 years ago by KyowonJeong <[email protected]>
Merge pull request #6414 from OpenMS/fix/pyoms_docstrings

[FIX] pyopenms docstrings

2da1067140598fc2e8823f3bb8a05e303a2ad2ed authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'refact_toppview' of https://github.com/cbielow/OpenMS into refact_toppview

c96cc4f17fb53a8be63e04c1efc144656b66fd6e authored almost 2 years ago by bielow <[email protected]>
fix more compiler warnings

61b954cc862c68c3fb33fcc6f74ea4315d40095f authored almost 2 years ago by bielow <[email protected]>
Merge branch 'develop' into fix/sirius-uncompressed-output

5688f8d1fd760f9fac697f80890011c4603a7d6e authored almost 2 years ago by Samuel Wein <[email protected]>
Update package_dragndrop_dmg.cmake

dd5c4b504aefcc4ac522673af02223ec431ae6f6 authored almost 2 years ago by Samuel Wein <[email protected]>
Update pyopenms-wheels.yml

add qtbase to archives

3cbf25df3e9ae3800a29d5b2ee8ce8cf8dcb9305 authored almost 2 years ago by Samuel Wein <[email protected]>
Update pyopenms-wheels.yml

More changes to pyopenms-wheels.yml

57fe56793c6f4469729fb12f2878e0eed0120287 authored almost 2 years ago by Samuel Wein <[email protected]>
hotfix for jurplel/install-qt-action/tree/v3

jurplel/install-qt-action/tree/v3 changes the `cached` keyword to `cache` for... reasons. Update...

50674e6627157a4da36da179fe7dc78c7a9fc319 authored almost 2 years ago by Samuel Wein <[email protected]>
estimateFromRNAMonoWeight and estimateFromPeptideMonoWeight are implemented in CoarseIsotopePatternGenerator.cpp

0cb05f4f10fc090053c65e5568e071da03073f91 authored almost 2 years ago by KyowonJeong <[email protected]>
update SIRIUS test whitlists

925d6d1f5de2f5bf004db7868e8c58f54a66467d authored almost 2 years ago by axelwalter <[email protected]>
[FIX] pyopenms docstrings

d901857ad922725b37c88723afadcbda7dc499d0 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into fix/sirius-uncompressed-output

aaec4d5749837bec406cbd052bd2b01aaaeaf1f5 authored almost 2 years ago by Samuel Wein <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Isolation windows crawling reimplemented

5ab422a626485607e5d829d6e44b670ad41d5fdd authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Isolation windows crawling reimplemented

fe2abd77a016b52a8248a3e8cb9c52d396333732 authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Isolation windows crawling reimplemented

9afbc077beb57c197af93c30dc30d9c78db01309 authored almost 2 years ago by KyowonJeong <[email protected]>
Merge pull request #6390 from jpfeuffer/tmt18plex

Tmt18plex

4e56919175af4bdb1a4146195a1fbd0da4e846ce authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6407 from poshul/fix/bump_cmake_min

[UPD] Bumped min cmake version to 3.15 to match with pyopenms

b4f3d95564df231a4737b6faf08d550db19b7d6b authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Isolation windows crawling reimplemented

52cf3cd32a124e8fcd536372b63263d5f227d7b7 authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Isolation windows crawling reimplemented

92f1f7844355ea9e7fdb6b6cffe5e9a966b12138 authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Upper bound bug fixed

593b8bec965a9e39a38c31bc4a8a3eed065c07ec authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Upper bound bug fixed

67acfe2879dd2a1cdf70feb1ac14046c1215e76a authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Upper bound bug fixed

d9bfdc75cce3bcfac7b4a5d11ea00aa5ffac8048 authored almost 2 years ago by KyowonJeong <[email protected]>
add new test

7e8375116660b3dbedd9ad16c6fb373c36f59c43 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Target mass bin bug fixed..

174007edcebddd69ce7f5e12acd42085d9d66f6f authored almost 2 years ago by KyowonJeong <[email protected]>
Fix 18-plex isotope correct test matrix.

Note that I'm still not confident about the correction matrix itself. This commit just adjusts t...

510582ebd8bc9ff44fdfca4ad53a12b2b858a52c authored almost 2 years ago by Radu Suciu <[email protected]>
Add missing includes for documenter

3f818837f68075c50b3496dcbf786d9da0245d9b authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h

Co-authored-by: Chris Bielow <[email protected]>

62ca9f0a196a0d0f2f824a53c3954c86e0d7e776 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
code review

6ae258944924f17a17f7ae6c7166ca873a89e6cf authored almost 2 years ago by jpfeuffer <[email protected]>
fix docs

c71ce3fa1ceef6a1612da292f69f0da12c651887 authored almost 2 years ago by jpfeuffer <[email protected]>
fix pyopenms

c59093235cec76c890763ec1f7d5185c7cab73b7 authored almost 2 years ago by jpfeuffer <[email protected]>
fix last tests

fe6f1f562181ed95bcc8e31c672871f5bfe77ae5 authored almost 2 years ago by jpfeuffer <[email protected]>
First crack at adding 18-plex support

73bd096042392c6d2f3516135989f5bf73011062 authored almost 2 years ago by Radu Suciu <[email protected]>
allow any number of corrections

d5cefabaf8953ed8cfa2d13a0c99b1a376a3e546 authored almost 2 years ago by jpfeuffer <[email protected]>
more fixes from code revie

e52e4ee639fa87f35125a543e511b1950d07d1ac authored almost 2 years ago by jpfeuffer <[email protected]>