Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS-1

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS-1

a change based on Sam's review

4d99dceb2bbc0ed2020b63d66cbc6f530033352b authored almost 2 years ago by JeeH-K <[email protected]>
Merge pull request #4 from poshul/fix/FLASHDeconvOnly

Fix/flash deconv only

411705a9572e33e84a0a52818c254adea8c88842 authored almost 2 years ago by JihyungKim <[email protected]>
Merge branch 'feature/FLASHDeconvOnly' into fix/FLASHDeconvOnly

f4da9ff2691c9c08485194b4f4402a5e13874681 authored almost 2 years ago by JihyungKim <[email protected]>
fix error in mac dependency script when plugin dir is not given

8af41ad0e11f46fdcbf1664238f05837a152979e authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
remove FLASHIda related codes and bug fixing on tests

63a8ad209b9de422955d4c2b38e50fa2094d3e85 authored almost 2 years ago by JeeH-K <[email protected]>
Merge remote-tracking branch 'origin/feature/FLASHDeconv' into feature/FLASHDeconvOnly

b7973192acfc6b801f8310ff700bcdd87ce32171 authored almost 2 years ago by JeeH-K <[email protected]>
Merge branch 'develop' into feature/FLASHDeconvOnly

fcc099dba718458dd35f024cc731fcd9f1b17455 authored almost 2 years ago by JeeH-K <[email protected]>
Merge remote-tracking branch 'upstream/develop' into feature/FLASHDeconv

3dc75d53ac8882c2cd8b42a59800ee38483cd73e authored almost 2 years ago by JeeH-K <[email protected]>
Top FD feature file output per ms level recovered. TopPIC needs them all.

85c2dfd9fc0648e3913a94e1f0b8a923bc39a3b2 authored almost 2 years ago by KyowonJeong <[email protected]>
For FLASHDeconvOnly

37caddd74b1311a8f09da367cb0f7acbc21b4183 authored almost 2 years ago by KyowonJeong <[email protected]>
For FLASHDeconvOnly

8721c8577e0d6bdaa0a6828d26969d26f29e780a authored almost 2 years ago by KyowonJeong <[email protected]>
Merge pull request #6450 from OpenMS/ci_add_clang

Update openms-ci.yml

ee1d1bcd8c1a04639629f02c7d8a2f956c87d0f4 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6452 from AmandaWein/AmandaWein-patch-1

Clarified bug/feature reporting in CONTRIBUTING.md

6e9182ac8277f18c44ce12f5b330a23a7204bb45 authored almost 2 years ago by Samuel Wein <[email protected]>
Update openms-ci.yml

fae2ce8ae3a89a4bf563f095f361d085ffbd6e54 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update openms-ci.yml

42e2806cb35643a39a8fdbf9b6fee24185d06acd authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update openms-ci.yml

2c64fb58e45a696e636e509054c1aaf3f657d9f9 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6428 from OpenMS/feature/clang_performance

Feature/clang performance

8befb000f9f7f9b380efdb362f880cfcde52e49b authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update openms-ci.yml

5483c7d326118a3598fcf4dfa5f9e9572126786e authored almost 2 years ago by Timo Sachsenberg <[email protected]>
QScore trainer from decoy

5bbd1ea4f197c584c1b1ac81988228b57e73daaf authored almost 2 years ago by KyowonJeong <[email protected]>
fix

af942e33eaa5a8dfbc49267bcd9268a02fad90b6 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update openms-ci.yml

70cb4ec0a83dd998c4252df78ac6dea6245d36cf authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update openms-ci.yml

390db47816be738994cd3b0124c9141c4f5933a9 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6449 from poshul/fix/macCLFIx

Fix/mac clf ix

a058b8a24855bdeacc310567212d5c8327dfa5e4 authored almost 2 years ago by Samuel Wein <[email protected]>
Update openms-ci.yml

1be43e0310b1a8b2e7a27436e831759514109b64 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update openms-ci.yml

df9ff2dba5ff4e62b4feb5f55903e792bc04fcf4 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
QScore trainer from decoy

6c50996526f2f65b25b5d5b582c5266422249798 authored almost 2 years ago by KyowonJeong <[email protected]>
Update BayesianProteinInferenceAlgorithm.h

b3c99e12bce5de89f4251f49c3f2c2ded8977945 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update openms-ci.yml

1267692345db59296ed51d3422416c2388f80f1d authored almost 2 years ago by Timo Sachsenberg <[email protected]>
QScore trainer from decoy

6d11a8aa458d3187811d8bf7314393549a452311 authored almost 2 years ago by KyowonJeong <[email protected]>
Update BayesianProteinInferenceAlgorithm.h

c562817039c7bf4724c4707eeae1825325a3b4a8 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update openms-ci.yml

5c55edb56eb751e4623c8a36e51a97483e60841a authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into fix_int64_xml

70827b7aabd20c85e06fa4d1b47786107e7b696b authored almost 2 years ago by Chris Bielow <[email protected]>
Merge branch 'develop' into fix/macCLFIx

39eb6c87426cd86a2198fec34c7ab8475c3344a5 authored almost 2 years ago by Samuel Wein <[email protected]>
Update openms-ci.yml

c20ac57c664473c8781895cf1d8f0a9b97817809 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update openms-ci.yml

12d91110a6b9665b508c54ea50a9c6007976f006 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update openms-ci.yml

8721a70dac5f04cb086c29c92be708aaaab34261 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
refactor code into XMLHandler, where it belongs

39da94135f9284771bc7ece5c329ce1eacc29562 authored almost 2 years ago by bielow <[email protected]>
Update BayesianProteinInferenceAlgorithm.h

5262fa15e0bc68fc0b06f45db1c6c58b1378edb9 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update openms-ci.yml

769d46a1dd52d7c96f1d4f08981e1d0cc38983a5 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
also fix other parsers

a94936af855bbb765fd0a6a9ab28eca64eb6ca8d authored almost 2 years ago by bielow <[email protected]>
Update openms-ci.yml

0e4962c990d95fe6d2cc6102fc697ee82417c9b2 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
fix mzMLHandler to use the correct types

ab337545980648944d7acbbae03c96209da3f737 authored almost 2 years ago by bielow <[email protected]>
add 32/64 bit integer conversion

0b030bacc73b235147434c60108d67055585da90 authored almost 2 years ago by bielow <[email protected]>
Update AUTHORS

Added Amanda Wein

6975926b527740c0d0fcf4f1183dbda6aeb8fe36 authored almost 2 years ago by Amanda Wein <[email protected]>
Merge branch 'develop' into feature/clang_performance

c9091c52eb21fd1c2950971fa34c88015558f9d9 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Added a link to open a new issue.

The new link is in the section "Reporting a New Issue".

3d51aa01d745376ed89afd2139ee65e064e468da authored almost 2 years ago by Amanda Wein <[email protected]>
Update openms-ci.yml

186f06083ccf952731737226a578ac1f0e58f213 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6446 from OpenMS/restrict_nr_processes

restrict number of spawned processes

b18cddad4d67a0b233902f712d2abdcc1ef2681d authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6409 from OpenMS/feat/update_uc

update updatecheck url to new cs subdomain

cfa86d80f46ebdfe262f1f3b44586cb1c2fd7418 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[fix] moved qt.conf install to the correct cmake file

9034a14eeb2d3276b35a8d683e0602c859053df0 authored almost 2 years ago by Samuel Wein <[email protected]>
minor

8bf3f8b6173e98d6367175878f8ebf9822796c72 authored almost 2 years ago by bielow <[email protected]>
differentiate between in32 and int64 in mzML

5203480630a89c9062f5918617cebee356adb8ad authored almost 2 years ago by bielow <[email protected]>
[fix] add permissions explicitly

a4206ad18d910a7d87babffe949fa06f50bf8f59 authored almost 2 years ago by Samuel Wein <[email protected]>
[fix] manually copy qt.conf

abb20cc0bb0dfb19031eb6f08ff60b7ce729f4bf authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6436 from axelwalter/feature/sirius-official-5.6.1

[Feature] SIRIUS 5.6.1 official release

63531b1fa6f73c491983aab255add18a9f43ebed authored almost 2 years ago by axelwalter <[email protected]>
Update TOPPViewBase.cpp

c6493c103dfdfa7cb0120b6e2191ed86a4871c36 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6426 from OpenMS/escape-underscores

Escape underscores and other special sphinx characters

0c63cf81338df0bfbc96c1296507836cc85fad74 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
fix

841724b2790ff9ae92805839334569d98cfb192e authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/sirius-official-5.6.1

e20d74c51ca8875da81d684e1808b6c26424e3ca authored almost 2 years ago by axelwalter <[email protected]>
Noise power calculation became a bit conservative. Max signal /10 intensity ones are considered

0e543d98fa065195d353d2a1ac81fa71db4fb8f9 authored almost 2 years ago by KyowonJeong <[email protected]>
Noise power calculation became a bit conservative. Max signal /10 intensity ones are considered

3a1d195c868e5a315cc5ac557e69ccfe623cba0a authored almost 2 years ago by KyowonJeong <[email protected]>
Noise power calculation became a bit conservative. Max signal /10 intensity ones are considered

b4b16ce5bea2046808b3e6d0c3a2e2101074bead authored almost 2 years ago by KyowonJeong <[email protected]>
pass verbosity parameter down to tool discovery

06dbeac4999bf41ac548b988251d3631ed39e705 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
prepare toppview for debug (verbose) option

87cdaf1e691e06b886eb14758c06924540ca753c authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Apply suggestions from code review

Co-authored-by: Chris Bielow <[email protected]>

9696a9eabb247a8d142dca5f66cd06e34e86f23f authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[fix] move qt.conf file creation into the DMG build

38a099fcd1876104a5219b5e21a3f2969e2b9e86 authored almost 2 years ago by Samuel Wein <[email protected]>
restrict number of spawned processes

8458e9219444df81fab457b89bcdb5edbdfa314b authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[fix] add qt.conf for Mac

de65ac27c789577677992dbcf438888918c6ba00 authored almost 2 years ago by Samuel Wein <[email protected]>
First pass

db8abf89b08268d52b09a69f203e66d672f182fa authored almost 2 years ago by Samuel Wein <[email protected]>
DL scoring training implemented.

78605b62090c6606b21b07c0a52b70b1a85447e0 authored almost 2 years ago by KyowonJeong <[email protected]>
Merge pull request #6445 from OpenMS/fix/MzTabSkipIDs

[FIX] Huge bug where empty IDs led to silent cancellation of export

91314f74662df9384e8d823657f776dcc75cc992 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[FIX] tests for mztab

f04c112ed67d4544229ff904bb99aebb28bb7a6a authored almost 2 years ago by jpfeuffer <[email protected]>
Merge pull request #6441 from OpenMS/jpfeuffer-patch-1

Update install-macs.doxygen

a8223f3dcee4135624ec56c2ad81f7183a32b1ad authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[FIX] Huge bug where empty IDs led to silent cancellation of export

d88a2414d0508799ce3d73af5bbee64d6b055f5b authored almost 2 years ago by jpfeuffer <[email protected]>
fix clang-tidy error

3b209be05e2605cd7885a4636dabbb8adbb848de authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/clang_performance

392b843c2797bc78f155dbf67b620d94929563c6 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update TOPPView.cpp

1af55a2162c87c6cf493d7d165b34bfbf8b5db92 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6442 from OpenMS/jpfeuffer-patch-4

[FIX] PLFQ mztab config bug

af09810aaa3d0e5bfe997719fd2bea5d2957b35f authored almost 2 years ago by Timo Sachsenberg <[email protected]>
small clang tidy correction

4864b2b580d08133f8baf21f238ac03168b98225 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6435 from OpenMS/feature/tv_optional_tool_scan

Update TOPPView.cpp

99e0cbbe632dd00c21718e2cc7c7a0865b06377c authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[FIX] PLFQ mztab config bug

86902d09c1b6f2276b7484c4ab24f0436f9dc2c1 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feature/clang_performance

a5f57b8bea465d06b8015d7e4a25dad3438aa022 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6425 from OpenMS/feature/clang_modernize

apply some clang-tidy fixes

8cccc06db5131147e32c3af7c110877283ff425b authored almost 2 years ago by Timo Sachsenberg <[email protected]>
not sure what the default build style in contrib is only add when from brew

cd8f39900b6fc6ee007a4ea985a39b6afbf5ed97 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update install-macs.doxygen

d2f6f4910d68837da8c66406841f697d13deb9d4 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feature/clang_modernize

a6ae00c8a991cff8e8b5d4201cc49181986ce14b authored almost 2 years ago by Timo Sachsenberg <[email protected]>
ignore ssl in ctest

979e293cd381e933ce490cd05726c9a0ba065e9a authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/clang_modernize

a805dd514b4138d4c14d16bb036bc70edbd88570 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
disable ssl check on upload of results

b5d55b59b89b0d50532d38a05fab7e9e3d4af37e authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6439 from cbielow/fix_vs2019_version

move unused vars to OpenMS target only to prevent pyOpenMS build failing

dc59267284d5590498a7161e9cb5008d990a0473 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
move unused vars to OpenMS target only to prevent pyOpenMS build failing

7c6d9d54a3a85dc5f211e7098d51fe89e1bc7ef5 authored almost 2 years ago by bielow <[email protected]>
update sirius version in files

de1a772558d021013964fe2d228945360dab5847 authored almost 2 years ago by axelwalter <[email protected]>
update to sirius 5.6.1 official release

c60baf48e6d849af9de40a88b456fc198c687585 authored almost 2 years ago by axelwalter <[email protected]>
update sirius to 5.6.2

96a0e1134eeed82fd37946bdd48cac92e630f76e authored almost 2 years ago by axelwalter <[email protected]>
Update knime_package_support.cmake

b85f7c99abca0af0a231ee41bd84bf925e6ed9af authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update knime_package_support.cmake

80c210171a947d4b20719350a2a9ec6d9bfbcdef authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6438 from jpfeuffer/feat/betterKNIMEpkg

[FEATURE] better KNIME packaging. Ship redist on Win and strip on lnx/mac

52cea87daaa3e4f36a8d13978936a029ebf8f030 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update cmake/knime_package_support.cmake

Co-authored-by: Timo Sachsenberg <[email protected]>

1620799c5667e5d0624ba449483904a07caa9bb1 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[FEATURE] better KNIME packaging. Ship redist on Win and strip on Lnx/mac

8c9a7fda4a377985d58ad7a8515e86a41ad3b26a authored almost 2 years ago by jpfeuffer <[email protected]>
some style corrections

f2e1c1e9074edf5dfee3cba4d8e32f2a7b945482 authored almost 2 years ago by Timo Sachsenberg <[email protected]>