github.com/OpenMS/OpenMS-1 commits | Ecosyste.ms: OpenCollective

Merge pull request #6542 from jpfeuffer/fix/packaging

[Fix] packaging

94ddac45635ffbb750e62ce17f1d299c52f17539 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Fix py versions to newer ones on manylinux action

015ce1e1e57f934b8c6d650c770b6ca337403604 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

little win fix

b95a3319e397c361e8c118b1ac8bacb227ab704a authored almost 2 years ago by jpfeuffer <[email protected]>

Smaller fixes on mac and notes.

e8f54ec6b3af3a2f935b5867a5baf1fab0491cbf authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

add codesign identifiers to bins and libs

6846be04c1c852ce4b60e5d8ad962ff9af170317 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Update package_dragndrop_dmg.cmake

28b892ba86927dc8a19c17465ebd6759f44b1649 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

smaller fixes

c3132f67d06d718b8ae89640c6c4c73b2b1299d4 authored almost 2 years ago by jpfeuffer <[email protected]>

Merge branch 'fix_TV' of https://github.com/cbielow/OpenMS into fix_TV

2d91748516fd931529639da90c7087f78e83031b authored almost 2 years ago by bielow <[email protected]>

fix intensity mode issues in TOPPView

135434874509037a5623c9b063d365488465e6e0 authored almost 2 years ago by bielow <[email protected]>

support query for range of current 1D data (spec/chrom/ etc)

7d5f891ac550e99c367c97587ec8bd6321717f37 authored almost 2 years ago by bielow <[email protected]>

rename method to what it actually does

06d5f779d38a9ec0f8a5d81ac0f2cddac7ad79e3 authored almost 2 years ago by bielow <[email protected]>

return mapped reference

5783424a79c54e761d2007fcc9b2594bd6ce9145 authored almost 2 years ago by bielow <[email protected]>

Merge pull request #6523 from OpenMS/revert-6518-revert-5688-feature/FLASHDeconvOnly

Revert "Revert "FLASHDeconv (only)""

87781ac029e4022224f10cf77f5112ce7ea6ce25 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'develop' into revert-6518-revert-5688-feature/FLASHDeconvOnly

f863567269837c74e52306910a305ec1fe3d9dd6 authored almost 2 years ago by JihyungKim <[email protected]>

Merge pull request #6540 from cbielow/fix_docwin

Fix docwin

9a00e236294c4a6f48955b00f1796e5d61420aa4 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'develop' into fix_docwin

8e6e42bed8ae7e38004f3ae089814e8f17f9e1f9 authored almost 2 years ago by Chris Bielow <[email protected]>

avoid hyperlink

132fbedd2c4bf1255ded9f0f8facace7fc0928a5 authored almost 2 years ago by bielow <[email protected]>

fix a few doxygen warnings

b24d9b9a99ed84e83b2fc3da62b1aa1c80eebee1 authored almost 2 years ago by bielow <[email protected]>

fix Doxygen clumping together text (avoid pipes!)

b45f69858424d7af6c274c6fe4a265fdcff70cd1 authored almost 2 years ago by bielow <[email protected]>

remove if-statement that will never be true

9299f8aa4b5f8c42942cb81decc1570ab6797617 authored almost 2 years ago by JeeH-K <[email protected]>

fixes and features for Win packaging and doc building

45a47181d13919cbddf8811cef6938cca95df7e5 authored almost 2 years ago by jpfeuffer <[email protected]>

Merge branch 'develop' into revert-6518-revert-5688-feature/FLASHDeconvOnly

682feaa85997301e8e8085137279e3328b07d127 authored almost 2 years ago by JihyungKim <[email protected]>

Merge pull request #6537 from OpenMS/timosachsenberg-patch-1

remove qt sql from findExternalLibs

3afcbf9c10efd41b6cfbce9d58c6911b168acbda authored almost 2 years ago by Timo Sachsenberg <[email protected]>

fixed openmp issue

7e74fecc1b5815296cbbcdcc178ad093c2e0a351 authored almost 2 years ago by JeeH-K <[email protected]>

Merge pull request #6539 from OpenMS/timosachsenberg-patch-2

add missing header file

42fd55ffdd46051141694c9db6045d24063e8307 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

add missing header file

dead61b06e652b4ccbf5f32f92520f918eaa88e8 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'develop' into revert-6518-revert-5688-feature/FLASHDeconvOnly

56b31280869d45ba7d7a79b85c0250607e91fe72 authored almost 2 years ago by JihyungKim <[email protected]>

Fix all kinds of packaging issues on non-Win.

ba1608cb790dbf932853f893fdbbee8460368557 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

remove qt sql from findExternalLibs

b6eb5e2598a16151c19c1b298e2319cd8422ddae authored almost 2 years ago by Timo Sachsenberg <[email protected]>

revert setting build type in gitpod cmake settings

this cannot be the way. It needs to be choosable in the UI

4fe5a2169ac7c22158b281721b2fac927fa5efa3 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Sync gitpod cmake plugin settings with prebuild command

9b24216c464f0e7d067b405fc586c5fcdf5d2716 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Update cibuild.cmake

ab33e4799f2e60742025fdeb77cc5248d817bea4 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #6531 from Telomelonia/patch-1

[DOC] minor typos

8f450a2166d756e1560fbee811e1df29884c5035 authored almost 2 years ago by Samuel Wein <[email protected]>

Merge pull request #6532 from OpenMS/poshul-patch-1

Update download-artifact

ba039c673956bee04790595cf17848d093f15e23 authored almost 2 years ago by Samuel Wein <[email protected]>

Update download-artifact

Download-artifact v3 downloads to a different directory by default than for v1. Making path expl...

e642a8c61ceb8b67f7ab07ebc6a1e86d143f0401 authored almost 2 years ago by Samuel Wein <[email protected]>

Merge branch 'develop' into revert-6518-revert-5688-feature/FLASHDeconvOnly

ef1468cf01ef54b163384b6a1ac4469a30d20bfa authored almost 2 years ago by JihyungKim <[email protected]>

Merge pull request #6530 from OpenMS/poshul-patch-1

Update Uni-tuebingen pypi url

ee1da3bfe2b9050ed40fd54535b5fecafe5cee3d authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Merge branch 'develop' into fix_TV

2e4b3c10d5d4c63fd60e939edf2194234666d261 authored almost 2 years ago by Chris Bielow <[email protected]>

undo automatic guessing of MS_level in AreaIterator. It leads to weird artifacts when scrolling through a region in TOPPView's 2D view, which has MS1 and MS2 spectra in it (even though the MS2 may not be visible).

61af926c3d4e5bd2b7081c06528bc54f8b17f6e9 authored almost 2 years ago by bielow <[email protected]>

minor typos

c2a77e0e1664579f7dd28f38b08c81c329b2f659 authored almost 2 years ago by Aryan Shukla <[email protected]>

fix "saving IDs by press on save ID button rises exception in ID view" in TOPPView

83580fb35e65a12d062a3b40c031da84fe4d04a2 authored almost 2 years ago by bielow <[email protected]>

Update openms_clang_format_add_and_commit.yml

bump tj-actions/changed-files@v33

cc2ec7388b76598da6949e8c5518606a2b2bbd18 authored almost 2 years ago by Samuel Wein <[email protected]>

Update openms_clang_format.yml

bump tj-actions/changed-files version

f0e0b3311ca62a026abfe9d8b6aa36b351e475b4 authored almost 2 years ago by Samuel Wein <[email protected]>

Update pyopenms-wheels.yml

fix pypa/gh-action-pypi-publish version

b150d5a7a3672c7b3e6dd169d6de02138b9d198a authored almost 2 years ago by Samuel Wein <[email protected]>

Small changed

38736bbcbf7c1fbc5da9b3c8859cac3ef86293b5 authored almost 2 years ago by KyowonJeong <[email protected]>

Update Uni-tuebingen pypi url

Update to the correct URL

b2d3656eb79fecd2b7ebcab9e63b8ceb7f2a1000 authored almost 2 years ago by Samuel Wein <[email protected]>

Changed for windows

16f8558fad97f707715ed315074b9f78b8a7e32f authored almost 2 years ago by KyowonJeong <[email protected]>

Removed all warnings and tested.

8e64503d74c1d759f4b4f40fa8ff31dba97d1aae authored almost 2 years ago by KyowonJeong <[email protected]>

Changed for windows

560d8a7b9286f7d7556fc45a69217f04cd2d9855 authored almost 2 years ago by KyowonJeong <[email protected]>

Synced with FLASHDeconv branch

491609a88b2494c4bba663da03b2f0270a1be9b5 authored almost 2 years ago by KyowonJeong <[email protected]>

Merge remote-tracking branch 'upstream/develop' into revert-6518-revert-5688-feature/FLASHDeconvOnly

d1891bb8c246d910812c897d704561b1d568962a authored almost 2 years ago by JeeH-K <[email protected]>

Merge pull request #6527 from OpenMS/fix/macdepscript

Fix/macdepscript

c6dd4f67dfcbd4db786b8064a6de548e7632cc4c authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Nit

0f2960ea12b261b97e5d7983c811047c36518dcd authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

fix the script again

d2d7ff93ee004df38b31e7c520780cc0bf6cb521 authored almost 2 years ago by Builder <[email protected]>

Update src/openms_gui/source/VISUAL/Plot2DCanvas.cpp

Co-authored-by: Timo Sachsenberg <[email protected]>

4ca9fb47edf569a8cb70a93482f8a678d3b8eed3 authored almost 2 years ago by Chris Bielow <[email protected]>

Merge pull request #6512 from OpenMS/jpfeuffer-patch-4

Try ninja on GHA Win

2db8e16deda1f2c1cff00ff52703e61e2c7f86de authored almost 2 years ago by Timo Sachsenberg <[email protected]>

forgot some files

7c5d45dd43c23c87afaa2bf0716124eb1a9443f3 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

apply fixes from https://github.com/OpenMS/OpenMS/pull/6522

a1d1084864056bcebf864a9368a8c051a6c15ee1 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Revert "Revert "FLASHDeconv (only)""

10b1bff776c7f2373348919b171317daa878fa88 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Changed more classes from DOCME to DOCME2

dce1cc9b0e34a10244e523bdf0cfc0028e6926ce authored almost 2 years ago by AmandaWein <[email protected]>

show intensity when mouse-hovering over a data point

89d60e9cdec35bcf29e9f0b59951253b78ae650e authored almost 2 years ago by bielow <[email protected]>

Merge pull request #6518 from OpenMS/revert-5688-feature/FLASHDeconvOnly

Revert "FLASHDeconv (only)"

39e2704019e554e21440a4ccca78b0ccc9c3a0fc authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Revert "FLASHDeconv (only)"

6886281b1cb2d3dec213d4804aa9a70ae745c6f7 authored almost 2 years ago by Samuel Wein <[email protected]>

Merge pull request #5688 from JeeH-K/feature/FLASHDeconvOnly

FLASHDeconv (only)

c73839e0ddbe3df187d5ec2cd7a3f86d6c6a64ab authored almost 2 years ago by Samuel Wein <[email protected]>

bug fixing on test

5d0e89d9dff97126f3656bf5974bf0d985c4d336 authored almost 2 years ago by JeeH-K <[email protected]>

bug fixing tests

d141462a8744368afa67b15ea3ed3cfc5c582db2 authored almost 2 years ago by JeeH-K <[email protected]>

Merge branch 'develop' into feature/FLASHDeconvOnly

62fc6271c6e7c6e70bf206fae8bb8edaeabbf729 authored almost 2 years ago by Samuel Wein <[email protected]>

Merge pull request #6517 from OpenMS/update_contrib

update contrib hash

5758fa72fb713d1b5e331ee84aafc657433363fa authored almost 2 years ago by Samuel Wein <[email protected]>

update contrib hash

f0bdc5acfee82198864f063c92f225e45318c542 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

fix plotting of precursor positions in 2D View

18ac15501f6a314ff27f0adb283100186bbcb03c authored almost 2 years ago by bielow <[email protected]>

Merge remote-tracking branch 'upstream/develop' into feature/FLASHDeconvOnly

f13c4c41a668a9f4a917f97a40b24f08d83609f3 authored almost 2 years ago by JeeH-K <[email protected]>

PeakGroup_test.cpp bug fixed + FLASHDeconv charge off by n artifact removal added

9d1ed4bfc07824a4833a8a19b9c133ced4ac8c6f authored almost 2 years ago by KyowonJeong <[email protected]>

testing DOCME2 for some classes

38020597e94f89215dc6035ac00f7c7ffdeac643 authored almost 2 years ago by AmandaWein <[email protected]>

Update .github/workflows/openms-ci.yml

54a5c8984123bfe3fa9e07b5aff17c8322b4753b authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #6493 from AmandaWein/patch2

Changed precursorMassCorrector to accept negative charges.

7ab4dd86478ed6d85fb4519f6cc23c58489bd11d authored almost 2 years ago by Amanda Wein <[email protected]>

Merge pull request #6511 from OpenMS/timosachsenberg/boost-spirit-karma-6507

might fix karma issue

e7d08ce5a313e9cb0cac30f3d62117fe1bff4fb2 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

try limit concurrency

5984a3567b7ccef23c9235deefed835388d8a71c authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #6487 from jcharkow/fix/pasefCachedFiles

[FIX] cached file loading OpenSwathWorkflow

1d872ff64274745a81aefd11fa2d271ae8d9bf89 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

build flags probably not valid. ninja should multithread per default anyway

6e7c332adea01ffc95d99aa95442fc512baa985e authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #6505 from OpenMS/cmake_fixes

use automoc only on openms libs, fix asan flag propagation

8e5678486751eecf346bb7b8f96dc5608177e53d authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #6500 from OpenMS/jpfeuffer-patch-1

Try collecting GH job status to display overall status

e953dcb34f3fae357126ce9e7c56c255a28d2548 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Try ninja on GHA Win

9c87571650093820d4fa3477c3b0de2dda781707 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #6510 from OpenMS/fix/installcmakedir

Use INSTALL_CMAKE_DIR variable

ecdb5064fdc1047eb331d26e9b0b325215e456bf authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Fix rest of messed up SqliteCPP

42d5f3d53bb5b01523bf19a60920dc91eb2802f2 authored almost 2 years ago by jpfeuffer <[email protected]>

use automoc only on openms libs, fix asan flag propagation

1a5c4b7a2d406fa2c71cc07cc15450388025bcb1 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

enable address sanitizer at target level

1154de527e51767d6df9ac1bbe3483b2e5120034 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Update AddressSanitizer.cmake

119fc2498a60a878f96b347476194aeaa0a32d52 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

might fix karma issue

9b6fce4ad026477fb0006d802beede7e512483b0 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Use INSTALL_CMAKE_DIR variable

367c0ac0db2e69dec6bcf7824c9e451daf29f1bd authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Update openms-ci.yml

274cb714f098b5e6aa459741e29d6b84c42401ae authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Merge branch 'develop' into feature/FLASHDeconvOnly

83e61aba3b37c8caf4c40a16d9437ff1a2d1c567 authored almost 2 years ago by JihyungKim <[email protected]>

Update openms-ci.yml

2fa6c6a57609283e0c60e45e890ab7a5f6279a7c authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #6494 from jpfeuffer/feat/pkgInstAndLessLatex

[FEATURE] Add pkg installer and faster, less latexy documentation.

467d5f94ecb348d2583c6aa40e73a183a0c529fd authored almost 2 years ago by Julianus Pfeuffer <[email protected]>

FLASHDecon for OpenMS3.0 Sam's PR is reflected. Need speed up a bit + buf fix

2c8f58d3e127613b238a6aca541b4238baeb6ed0 authored almost 2 years ago by KyowonJeong <[email protected]>

FLASHDeconv Only for OpenMS3.0 Sam's PR is reflected.

f09d9642ce94bb347a7142dff556dbe409573c3c authored almost 2 years ago by KyowonJeong <[email protected]>

Merge branch 'develop' into feat/pkgInstAndLessLatex

11ca5454821f3750f2ddd2e71d28ce2dfbfb615c authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'develop' into fix/pasefCachedFiles

4a51759397fd9e34ce2b4be0f95b726d94802f4b authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'fix/pasefCachedFiles' of github.com:jcharkow/OpenMS into fix/pasefCachedFiles

bf1e76b173d4ef3329de137cb398fb6ab406b492 authored almost 2 years ago by jcharkow <[email protected]>

[NOP] remove debug print statements

2472874910bc13b92444ade6569d38e1a4678d78 authored almost 2 years ago by jcharkow <[email protected]>

Update dockerdeploy.yml

Update login-action

e92616748a099f859b22d4041a198f173ab5a757 authored almost 2 years ago by Samuel Wein <[email protected]>