Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS-1

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS-1

[HOTFIX] Array OOB

1468c9c3514448e60e51a06ae0986c5e8878713c authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'idfile-integration' into fix/hendrik_idfile_integration

e5a553c8a6029c3d29fd54d7e7a5e7717b4409e0 authored over 3 years ago by hendrikweisser <[email protected]>
[FIX,TEST] fixed 'FFIdAlgo::extractTargetID_' for ref. strings with '#' (multiple RT regions); added test

f06ba216da1f30ff239212609f25499dd7ebaa44 authored over 3 years ago by Hendrik Weisser <[email protected]>
[fix] Added missing virtual deconstructor to SiriusAdapterAlgorithm (#5244)

213daa4b6ca61d0eb0a0e02eb19c5a594a588c95 authored over 3 years ago by David Voigt <[email protected]>
Update cibuild.cmake

cf3e0df199c542cd1faa7004e1c1e0b0871f682c authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Update cibuild.cmake

637469ea086b6acc00bb928778601f507561bd80 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
cleanup

d3c7f41835a6bf35d087e8460f89e0582281bedb authored over 3 years ago by oliveralka <[email protected]>
use add_compile_options

1c29d9efce24f7a83ca07433411d40c9703f350e authored over 3 years ago by Julianus Pfeuffer <[email protected]>
disable optimization

2cdd0c5a6b795380a65887cd6647b21ee8b03ddd authored over 3 years ago by Julianus Pfeuffer <[email protected]>
revert to release on win

d1f44e935fcee2bccfd36c0a4678b18034983da6 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Detailed summary too slow

43188e2e6c75540ceb6dc39dc0dd2fe4636af225 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
[Fix] plfq cornercases and exp. design checks (#5243)

* [FIX] check experimental design more thoroughly and avoid unnecessary work in plfq for single ...

b486f77a3bdfc4d5d1f1efc528c47b687acd6f07 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Update openms-ci.yml

2b7f39621a91e2d79fddb475f309881d3d30072e authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Add detailed summary and Multiproject compilation on win

fd858ec4b3d70c1b7c746c818d865c4cd6205908 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
mass global target rt added

466c0dbbf35fc51b239ed87a32013449120cf10d authored over 3 years ago by kyowonjeong <[email protected]>
Merge pull request #5239 from jpfeuffer/feature/OpenMSModEnzInfo

[FEATURE] Add OpenMSDatabasesInfo Util to list supported Enzymes and Mods in tsv

ee508d9cc033c9ca2c4372967fac4d7cd7c8d78f authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Use the nr threads from the official GH actions docu

6b820de7823d0c2bae943d4decac916368551123 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
[FIX] Remove unnecessary CMAKE_FIND_LIBRARY_SUFFIXES

The suffixes we set were the default anyway and with BigSur, macOS switched to dylib stubs (.tbd...

045f51610423cce93da3a151da3f44912dd922da authored over 3 years ago by Julianus Pfeuffer <[email protected]>
mass global target rt added

dd06a665d2009f2064930ef2fa1371e8d00749f4 authored over 3 years ago by kyowonjeong <[email protected]>
return val

39d6370e1c3230a1448fd3b756c9257f073ba486 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
mass global target rt added

f1495e372a2ffd0b9ee875a3f4bb0f4ce4770dde authored over 3 years ago by kyowonjeong <[email protected]>
mass overlap bug (no log binnumber) fixed.

25ed76e8a0f8a1e75f277ca19cd3c74aea8f96c1 authored over 3 years ago by kyowonjeong <[email protected]>
Update src/openms/include/OpenMS/CHEMISTRY/ModificationsDB.h

Co-authored-by: Timo Sachsenberg <[email protected]>

43e780fb3378d8964c7c5818b5a3b2af9971eb4c authored over 3 years ago by Julianus Pfeuffer <[email protected]>
tsv changes

071ad797074829a245abf61ddd0d10851363d213 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
mass overlap bug (no log binnumber) fixed.

2a3f16b742682c16ebebeb4dcb71ac6e4b2be86a authored over 3 years ago by kyowonjeong <[email protected]>
use cmake action since everything else is crap

7f4c52ce1c9e1e943782c34517c592632831c97a authored over 3 years ago by Julianus Pfeuffer <[email protected]>
mass overlap bug (no log binnumber) fixed.

4c1d83fda204cf17c0d7851f532f0bbfebb1d89a authored over 3 years ago by kyowonjeong <[email protected]>
Update openms-ci.yml

02d4c0a34e833ce20c4d2602adef4d7e794e79c9 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
CMAKE_DIR

7a8f11cdb2523e7967598678fd5c6d808a1d61c9 authored over 3 years ago by Leon Bichmann <[email protected]>
CMAKE_DIR

9f35ca6dfeb96df2f2be99607dbb40166b276c6a authored over 3 years ago by Leon Bichmann <[email protected]>
chocolatey already installed + bash syntax

c398c95969022dcf362b75fbba8813000706b25d authored over 3 years ago by Leon Bichmann <[email protected]>
FLASHIda global target

8dc8e89049fe17dec907dbccf16a193d577479b3 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda global target

be775fb52cf8229c4a08588072a3a4c94a2c60b2 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda global target

4e74f9c7e12874baa1f0c84258c8383852ea8d8f authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda global target

a3eefb51b9508fec4cebff0de8711838b1250f51 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda global target

738056c832b8672469db09b17dbcbb22b72ada4f authored over 3 years ago by kyowonjeong <[email protected]>
add move constructor and fix some warnings

ab2690a54a07d3d77bb1e58cb65fa400569416f6 authored over 3 years ago by Timo Sachsenberg <[email protected]>
FLASHIda global target

36bac56aed2ffbb724d624cc89a0a417c955e702 authored over 3 years ago by kyowonjeong <[email protected]>
docu

4fbc681962b55642a133c34f48c802cdb45de5d0 authored over 3 years ago by Tom Waschischeck <[email protected]>
FLASHIda global target

45b617e9efadfc0dac9b1960e1910570bff5f333 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda global target

1162db9aff93fdcc256e4c2c67f73cdebfee463c authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda global target

1ab30bfd1c977b1ac74f2073f9799d6a4eaab3ce authored over 3 years ago by kyowonjeong <[email protected]>
FLASHIda global target

00a4316a2ff5c32e40a5d29e00a11938df369f8b authored over 3 years ago by kyowonjeong <[email protected]>
try windows syntax

543b263abe9a1c337ed9a680a28f9824db490ed5 authored over 3 years ago by Leon Bichmann <[email protected]>
cmake path

b042ac933c6ece3319dd4e875f94761e40a8ab93 authored over 3 years ago by Leon Bichmann <[email protected]>
use chocolotey to set cmake 3.18

8182685db327d49858bf444f6c973c7b840604a0 authored over 3 years ago by Leon Bichmann <[email protected]>
try cmake swiss army knife gh-action

69b5fb3c9fbb9ee50a8a0b3db65dc390cbcdf748 authored over 3 years ago by Leon Bichmann <[email protected]>
address issues pointed out by reviewers

fd39e7432393c031467770a78e4571538944ab2f authored over 3 years ago by axelwalter <[email protected]>
allow consensusXML with all psms and doc fixes

72f14a30b0fbea87f8eb6c9e7b6868424326b6c2 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
try to fix gitpod caching

e1146d4f20c09238791a9d2cc7a9e72c21529db4 authored over 3 years ago by jpfeuffer <[email protected]>
Update settings.json

5a3ec8d55d8481983a4d4121bb7c52bb27d26224 authored over 3 years ago by Timo Sachsenberg <[email protected]>
Update settings.json

3cb7d9ddaaa44ba80ab6a8f71d1fa46d6746f1f8 authored over 3 years ago by Timo Sachsenberg <[email protected]>
merge gitpod changes

783b9b2f9290a808dde577229dce62bad350e0ae authored over 3 years ago by jpfeuffer <[email protected]>
gitpod fixes to skip rebuild

2c3b9dfff5f97745f948bbb051a1cebde93dc7c6 authored over 3 years ago by jpfeuffer <[email protected]>
[fix] Implemented multi-site searching for RNAses using vectors of regexes

391cc829dc783019f6824b1edc5a7306c028aea1 authored over 3 years ago by Samuel Wein <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop

3d55aa05fb321712edbeddac152751470659f142 authored over 3 years ago by Timo Sachsenberg <[email protected]>
attempt to fix gitpod delete of build folder

36f7e6c0bd9d2dc3e97f85be31aebd9deb031460 authored over 3 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop

9d8b27685817af4d34880108f14ec085f2525a4e authored over 3 years ago by jpfeuffer <[email protected]>
remove kit compilers to force re-use of CMakeCache

bbea675c973c2d04e74fa0f0835b01f25ab87448 authored over 3 years ago by jpfeuffer <[email protected]>
Merge pull request #5235 from OpenMS/jpfeuffer-patch-1

Add some other redist finding methods and arbitrarily use first redist in case multiple are found

272177777bbf9e00b2c45646730287c57fe54600 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
tested changes

ceb2d5c60155f69e85ecc9819aa41f883fda6174 authored over 3 years ago by jpfeuffer <[email protected]>
[FEATURE] Add OpenMSDatabasesInfo Util to list supported Enzymes and Mods in tsv.

bcafbb1fdc952f36820b7a7d079cc85f49fb10d2 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
double slash

fd5a89e6761368e270bdb0df4dfe0b7abb502934 authored over 3 years ago by Leon Bichmann <[email protected]>
dash

bd7805086f51583375242e2ef917e79e6717b321 authored over 3 years ago by Leon Bichmann <[email protected]>
CL_MPCount

3fc3ae7da2a9509f258ecbcbc54f92de7f9e309f authored over 3 years ago by Leon Bichmann <[email protected]>
add variance storage to docu

4709602cc821a922c0b5c82453a5518954b36057 authored over 3 years ago by Tom Waschischeck <[email protected]>
add basic QC metrics

3fa4a490fd582d1f69ac2bf5ea7f7f556488d63b authored over 3 years ago by axelwalter <[email protected]>
[REFACTOR] separate mzQC and qcML algorithm files, both usable by QCCalculator

f44a523e796ff4a49bbacd5987710bd70ae8a442 authored over 3 years ago by axelwalter <[email protected]>
update nlohmann/json and add mzQC basic scaffold

3ab967ea06ba50391567299bdb24358ce6544682 authored over 3 years ago by axelwalter <[email protected]>
add mzQC to FileTypes

6e1b163faa26b52917d519d0fd21db2e25eece1b authored over 3 years ago by axelwalter <[email protected]>
add files for independend QC Calcualtor with mzQC output

copied QcMLFile.cpp to MzQCFile.cpp
copied QcMLFile.h to MzQCFile.h
copied QCCalculator.cpp to M...

84ab8b80454fcddaa49467b9fb0f920565b8a0e4 authored over 3 years ago by axelwalter <[email protected]>
added mzQC export for the QCCalculator

28d0800f3a0d607c634e20dcde542d0455bc7d2a authored over 3 years ago by axelwalter <[email protected]>
Revert "added mzQC export for the QCCalculator"

This reverts commit d834313d204f510362300eff543dc9d48ae167fb.

84d06d9234e99f2424745207af40c9009ac8c028 authored over 3 years ago by axelwalter <[email protected]>
add branch to actions ci

2ec86a6f36067d5897987dda968d32ce76a436ed authored over 3 years ago by Leon Bichmann <[email protected]>
reset to build flag param

8884c7a28a1cd6ba714faca11aa7515532a5d52e authored over 3 years ago by Leon Bichmann <[email protected]>
change pr name

b80d822e72f73d106d9b7f78256c22558858db59 authored over 3 years ago by Leon Bichmann <[email protected]>
boost debug off

cc16e15e126b91cf8fe7d3d8ba99693623f5442e authored over 3 years ago by Leon Bichmann <[email protected]>
reamde

82d9d1266c474d0e2c6cd85b6575f39dcb686252 authored over 3 years ago by oliveralka <[email protected]>
Merge remote-tracking branch 'origin/feature/FLASHDeconv' into feature/FLASHDeconv

5f68be2e0b268024decb14b279f8cd42e8766d87 authored over 3 years ago by kyowonjeong <[email protected]>
FLASHDeconv 2.0 beta release version. Parameter problem fixed

d286f66a56e1867175cc426c46726d16abc0f077 authored over 3 years ago by kyowonjeong <[email protected]>
[FEATURE] Add OpenMSDatabasesInfo Util to list supported Enzymes and Mods in tsv.

3fc3f1f67ba8b561849ab4502eb233e114dc2142 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Fix and make safer?

f294ace41c8134983dab2fb5dc2cbf620ab374b0 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
forgot commit CMakelists

9781c4f28c45cf9e48f2423a129172c82d4a4ee8 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
[FEATURE] Allow exporting all PSMs to mzTab (ID-only for now)

9d57cbd00606f8db4f1d1c45fa40979fe3710f33 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
add check

126f744327ac5ef8bdae1dc26ed706ebd1b2fe43 authored over 3 years ago by oliveralka <[email protected]>
check if existing

5215d0d14544e273897d10c5f1410a99b30c940b authored over 3 years ago by oliveralka <[email protected]>
Additional fixes NSIS

be2debd4c78894d842f066dd23b1800953214bec authored over 3 years ago by oliveralka <[email protected]>
greater

6ff165d6d2e02c77c4f5684b235c72e5bebbbe70 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Add some other redist finding methods and arbitrarily use first redist in case multiple are found

4279065b9188a52a8df141f926fc14a6bd415fc4 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Add fixed testfiles PLFQ3

d398538e0ef43e3ce8bf0572f5a8cc830d0548b4 authored over 3 years ago by oliveralka <[email protected]>
set setLoadedFilePath as fix for PLFQ_3

8a9a993e6b6a86d23c10ec3c81403a62f3877325 authored over 3 years ago by oliveralka <[email protected]>
changes testfiles proteomcisLFQ

0591cbc63145d43099c3102d3f82437f5f42eb17 authored over 3 years ago by oliveralka <[email protected]>
Comment: 'dummy' peptideidentification

c91a5cb1f2c2fa11752ad486a0a561a0645bbadd authored over 3 years ago by oliveralka <[email protected]>
Merge pull request #5233 from OpenMS/jpfeuffer-patch-1

[FIX] remove potential source for multiple def. error

c417f3e4c305fdadcf46dc9185d9dc7c7973d1b8 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
[FIX] remove potential source for multiple def. error

5bb9782b846abf168be77cec7f02c44718698317 authored over 3 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #5227 from oliveralka/fix/sirius_jenkins

Test: Sirius Tests Jenkins

3bcd22517b2fa5512e9f64384084256b2e2b45fc authored over 3 years ago by Julianus Pfeuffer <[email protected]>
bug fixing on handling file path with white spaces

f04482102b1c987bced1f40164b6cac1f662a1f7 authored over 3 years ago by JeeK <[email protected]>
Update THIRDPARTY master; Whitelist sirius test 9,10 '522.38'

c6d2cbb03bb1b6b69d3e6a783b36374d70f5245b authored over 3 years ago by oliveralka <[email protected]>
adding FLASHDeconvScript

bcd9ff978053c76fbcd6b654275a6ba3a5e57a71 authored over 3 years ago by JeeK <[email protected]>
bug fixing on moving FLASHDeconv from utils to tools in ToolHandler

0cd84336f56735098a1548d32d45dda8e7d82a87 authored over 3 years ago by JeeK <[email protected]>