github.com/OpenMS/OpenMS-1 commits | Ecosyste.ms: OpenCollective

[API] IdentificationData: made ref. to input file required in struct 'Observation'

8a4931b08d9e16c7760267e81325ad95d461a060 authored over 3 years ago by Hendrik Weisser <[email protected]>

[FIX] add missing include

d6e58da28525a197c19bc9c8cd309fc95978ee12 authored over 3 years ago by Hendrik Weisser <[email protected]>

Update IdentificationData.cpp

62a39e06d2fca00d5499c5dc2c6f3734b6a9201b authored over 3 years ago by Timo Sachsenberg <[email protected]>

adding defaults

7989a03b8a11ea4106d582e38fff8c3b474734dd authored over 3 years ago by bielow <[email protected]>

re-opening the box...

1a2abd8031458d2201d69bf425f7efb4b8c38d91 authored over 3 years ago by bielow <[email protected]>

force check of input file name

4a1bbb8d3e6aadf2591d651c9764df9bae5f633d authored over 3 years ago by timosachsenberg <[email protected]>

reverting Pandoras' Box...

0c27d1b980fb4e881d1a3ad647708adee2fd45c6 authored over 3 years ago by bielow <[email protected]>

revert Precusor changes since rule of 0 for Precursor prevents noexcept move-ctor for MSChromatogram in VS2019 ...

6047e1fa89b776a0e501386c1ae20aeca6b556a2 authored over 3 years ago by bielow <[email protected]>

add more test cases

bb221376bc917f031fb3c516f2bf6ba4eef1868c authored over 3 years ago by bielow <[email protected]>

Merge remote-tracking branch 'upstream/develop' into fix/hendrik_idfile_integration

9e597a6c0c9378b5dc8b01f368bb062bf5ae96f1 authored over 3 years ago by timosachsenberg <[email protected]>

fix compile error

4e98ccfe935ca801255e46d71b1c6a436f05feb6 authored over 3 years ago by bielow <[email protected]>

rename function

ce959278378624798c46ee5c57462be14dc054b1 authored over 3 years ago by bielow <[email protected]>

rename to coform to coding conventions

ed3ab2f5c2a1b151064d426a848509026d1d11de authored over 3 years ago by bielow <[email protected]>

Fixed error of extracted fuctions

42410fc5048936e1a51a18c970ecae56d0e9c56e authored over 3 years ago by valentin-noske <[email protected]>

seq-align working but not yet optimized

213b6a66952dcb14b4cdfdcfd04dc06e714c6fd1 authored over 3 years ago by Nora Wild <[email protected]>

small fixes regarding empty fields

0dddb18d4dcdb65fab81e55222a70d3add99a2e6 authored over 3 years ago by timosachsenberg <[email protected]>

Merge pull request #5317 from jpfeuffer/fix/ProtQuantWEmptyProts

[FIX] ProteinQuantifier error with empty protein ID.

3608aabc6397cfa8c385c2e5b6546ec85fedb489 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

adapt test output too

967f02ad73f7e493d7d07dbf9100b54f54b83634 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

adapt tests to fake inference.

ff98b2ef014198abcc46475a74c06e093ac6ff32 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

[FIX] ProteinQuantifier error with empty protein ID. Also fixed a code warning.

e69043f51afb080026e858f3ce748646f0a85a04 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Merge branch 'GUI-fixes' of https://github.com/cbielow/OpenMS into GUI-fixes

297197c29850cf253cdf2bf465c93dbcdf2594ee authored over 3 years ago by bielow <[email protected]>

preliminary refactoring

14b29c27ca83045624f08e683213abb2eb3acbac authored over 3 years ago by bielow <[email protected]>

support flexible sorting by arbitrary metrics for MSSpectrum

d923c305c075a8c6362713b4854f74fbb8ce9c43 authored over 3 years ago by bielow <[email protected]>

pep_hits_ neu

5548a9b7d98eb01c04a317217abdc97ad7e460df authored over 3 years ago by Vincent Musch <[email protected]>

Merge remote-tracking branch 'hendrikweisser/idfile-integration' into fix/hendrik_idfile_integration

3d8157a29554d8adf2bfd1c82939cfb5188f40c4 authored over 3 years ago by timosachsenberg <[email protected]>

additional debug output in exception

2f48bf09dc525e8a4a8c13a5955e8427c74d774c authored over 3 years ago by timosachsenberg <[email protected]>

Merge remote-tracking branch 'upstream/develop' into fix/hendrik_idfile_integration

74fddad286027494dae2db4c62983d73efaab2ea authored over 3 years ago by timosachsenberg <[email protected]>

seq-align not yet compiling

5502882ac6a20e1e4c46c7091e50e463ca47a11f authored over 3 years ago by Nora Wild <[email protected]>

renamed operator+= and more error messages

3611ef01a5150c6a4cafa350a585acd4cadb91f1 authored over 3 years ago by Timo Sachsenberg <[email protected]>

bug fixing

a4264d1e7f65422485ac4753ed256f22a56d65e7 authored over 3 years ago by Vincent Musch <[email protected]>

seq-align not yet compiling

ca23e076a943eb8dc739eb31b517ababc4473741 authored over 3 years ago by Nora Wild <[email protected]>

expand Histogram

406941c730a78fde4974ca00df56a49d33f6478e authored over 3 years ago by bielow <[email protected]>

Merge branch 'maxQuant' of https://github.com/vmusch/OpenMS into maxQuant

e7e22193b8c7de08db757aab6ab9a7972d7d65c0 authored over 3 years ago by Vincent Musch <[email protected]>

outsourcing of fillConsensusPepIdMap

b160ae535dc2985f5bdd4e958c733254360efb81 authored over 3 years ago by Vincent Musch <[email protected]>

add the correct test?

d749e1285b1c48f7126c8184e5b2dab073c824eb authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Bit of cleanup and some debug comments

98d99834952d20148d4e93a209b35d21b5306cbf authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Completed class test

b3ca48296b584a31f1bf91bdbcbe01d9742a687a authored over 3 years ago by valentin-noske <[email protected]>

test

fc5551d6460d6a0bfdb025d5ac12bd59efb97014 authored over 3 years ago by Vincent Musch <[email protected]>

Merge branch 'develop' of https://github.com/OpenMS/OpenMS into GUI-fixes

1193159a3380ff6f1a8dfe512d9e5542315b3604 authored over 3 years ago by bielow <[email protected]>

renaming members

769c9c110ebf3138da3b6075dbe5d1dc20c75e16 authored over 3 years ago by bielow <[email protected]>

convenience method

34a1d63c2d626a427a5bb931f1aa5eea9cd20919 authored over 3 years ago by bielow <[email protected]>

Precursor cleanup

740904351baa2b6e062571214919698b037e487c authored over 3 years ago by bielow <[email protected]>

error handling

95c01e411533836cf9a619970b8ff88afa779d83 authored over 3 years ago by Vincent Musch <[email protected]>

Merge pull request #5312 from OpenMS/hroest-patch-1

Fix Discord widget

38716bcd1b900edae1848bc0da3b772eb89400be authored over 3 years ago by Hannes Roest <[email protected]>

Update README.md

27d70836fe60404b767f0f230cca8dc1846ffdb5 authored over 3 years ago by Hannes Roest <[email protected]>

Fasta Reader (#5308)

* added myself as author

* FASTA-Reader-Files without using Seqan...

a10988a18c86a218c2c7cc24f84c0d5af1ea70b9 authored over 3 years ago by noraw61 <[email protected]>

id & potential contaminant fix

7355b3fddd50dd2dae92efbee4b0dcee79557044 authored over 3 years ago by Vincent Musch <[email protected]>

Changed id

41a0f1ffcb96ac5b78bb4eedbfd57000331026d7 authored over 3 years ago by valentin-noske <[email protected]>

Deleted using namespace std and refactored includes

d9dfa4ed90b1d948041d4b342585cd9f6a0bdae6 authored over 3 years ago by valentin-noske <[email protected]>

test

8fd274ab93d8e497a4f5d04b158188d9f03e5ce5 authored over 3 years ago by Vincent Musch <[email protected]>

fehler behoben; fTc eingebunden; raw_file aktualisiert

352a6d31952c4ffcd327c3e067160d8b487ffa9a authored over 3 years ago by Vincent Musch <[email protected]>

Overlap removing bug fixed (last mass ignored before) + topFD output per charge in peakgroup

5239f521181ffbd21a946ba5c59b52558bf44c97 authored over 3 years ago by kyowonjeong <[email protected]>

Overlap removing bug fixed (last mass ignored before) + topFD output per charge in peakgroup

5b89eafeb9576a820736a447ce5f4811ad345827 authored over 3 years ago by kyowonjeong <[email protected]>

Added type column

435c17947a2d01e4cf0f19c390819a336731f999 authored over 3 years ago by valentin-noske <[email protected]>

Overlap removing bug fixed (last mass ignored before) + topFD output per charge in peakgroup

aa845e1f0dd6ea2ac25cd4fd7051c0ab89a09eab authored over 3 years ago by kyowonjeong <[email protected]>

minor

5d5b6a285a800759cdcf7eb59c8aae9a159552dd authored over 3 years ago by bielow <[email protected]>

remove example from doxygen

90412f0c52b37beef43da8886f1eef0578d48a86 authored over 3 years ago by Timo Sachsenberg <[email protected]>

funktioniert noch nicht Toppas crasht

d85d1ec109439d3331d3250142b0be48b9ecea5f authored over 3 years ago by Vincent Musch <[email protected]>

style changes

c9893a975afaf2e4ed6d65887f0fb865776a9fe4 authored over 3 years ago by Nora Wild <[email protected]>

[PY-Bindings] add some doc to MSExperiment and MzMLFile (#5225)

* add some doc to MSExperiment and MzMLFile

* Update MSExperiment.pxd

* Update MSExperimen...

8570f04ec5346542be2fda76cf83563460e614f7 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Derive from runtime_error for pyOpenMS error messages (#5220)

* attempt to derive from runtime_error for pyOpenMS error messages

* Update Exception.h

* ...

fccd664659d5ef58fc7159339387dc13ff5e1e11 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'develop' of https://github.com/OpenMS/OpenMS into GUI-fixes

# Conflicts:
# src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp
# src/openms_gui/sourc...

a118bd65d3a662816b19a4a12d4193194e7a942a authored over 3 years ago by bielow <[email protected]>

save

a1778074b3aa8131c98a358f0b042b5221105415 authored over 3 years ago by bielow <[email protected]>

style changes

82e3769b7d01dc9e04fcd4e58affffd94d9c1a9d authored over 3 years ago by Nora Wild <[email protected]>

exceptions

09ef524dfd27f191439df42dc654ec05f6921795 authored over 3 years ago by Vincent Musch <[email protected]>

cleanup

95732b6a31a7e27917cba451dfdee31cacd4750c authored over 3 years ago by bielow <[email protected]>

Overlap removing bug fixed (last mass ignored before) + topFD output per charge in peakgroup

0cc8b701667e72f592c9705a49891e175d4d5bac authored over 3 years ago by kyowonjeong <[email protected]>

match time diff & QC

d2a3c6d4e9e349636646d794e38535ddbac171f4 authored over 3 years ago by Vincent Musch <[email protected]>

fasta-reader

fcc4d045faba32ba6a3408820ffac59f86fb6b04 authored over 3 years ago by Nora Wild <[email protected]>

fasta-reader

ad3292252da25dd81087c78145ecd9e29e016f33 authored over 3 years ago by Nora Wild <[email protected]>

fasta-reader

fa81f81e9fc16b801e07aa1c72f76a45f2bf3aac authored over 3 years ago by Nora Wild <[email protected]>

Merge branch 'testbranch' of https://github.com/kasrat93/OpenMS into fasta-reader

a62c4f6d137cbef441cd39c71e1fffbcd9647d94 authored over 3 years ago by Nora Wild <[email protected]>

old-test-version

25e85704c2a6d6e1ac977da06174130be8829079 authored over 3 years ago by Nora Wild <[email protected]>

testPos()

7360aa58c7d3182d0038ef2f0cb9cb291584a116 authored over 3 years ago by kasrat93 <[email protected]>

Merge branch 'fasta-reader' of https://github.com/noraw61/OpenMS into testbranch

a7b2cf29619829bc7fe06ae51fb1d9607c0584e6 authored over 3 years ago by kasrat93 <[email protected]>

merge-conflict

52062e997ee846f16206b5bb3ec4181963c68f4d authored over 3 years ago by kasrat93 <[email protected]>

fasta-reader

c59d49198fa3bc6b9a2629d69809cf3f779169ed authored over 3 years ago by Nora Wild <[email protected]>

folder

92da9b3084a74861a797bde7b560e962eae32f5a authored over 3 years ago by Vincent Musch <[email protected]>

error fixing

598c208d790c043d3791912df08c4f3b596b8b38 authored over 3 years ago by Vincent Musch <[email protected]>

Merge

b3cea629c92076f7cbec8d60c2fde7070a08794d authored over 3 years ago by valentin-noske <[email protected]>

convenience functions

1511bb592fbbc7a41520869a43cb0585b50126f8 authored over 3 years ago by bielow <[email protected]>

just playing around..

1dde2ad5bb119d64e7735f72bb422db811d1b5d3 authored over 3 years ago by bielow <[email protected]>

Small changes

04d4fb0bf1dd92f998b498512d980b68e6b447f3 authored over 3 years ago by valentin-noske <[email protected]>

Fixes OpenMS/OpenMS#5232 (#5303)

f2904bc371dc72e7f7a27a6d48fc6bc55c0254f7 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #2 from OpenMS/develop

Update my fork

e9a8010e6e4d8f1c5635309212772c3f912db4f4 authored over 3 years ago by emilpaulitz <[email protected]>

delete_tmp

5eb9ab5aa03b7e81f98f4d2bf87d88849a20de3e authored over 3 years ago by kasrat93 <[email protected]>

test position

662920eea454027b96a7b93f830511efd3875ea6 authored over 3 years ago by kasrat93 <[email protected]>

pointer

4c3a40ad84e1837d660890f5f3e3c5057d446b22 authored over 3 years ago by Vincent Musch <[email protected]>

Update FAIMSHelper_test.cpp

5fe7aec09ea7983db205ec64345b24d2004d6628 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Feature/split by faims cv (#5302)

* [FEATURE] get compensation voltages from FAIMS experiment

* [TEST] class test for FAIMSHelp...

c80f2653ade781851f5a7ee52ea657de6ffd6b38 authored over 3 years ago by Chris Bielow <[email protected]>

fix warning

46882359bde6445ec1d5b5a14ae978061b2a1cc8 authored over 3 years ago by timosachsenberg <[email protected]>

dies und das

acb608d143398d31fe77c554f6d199a26a4fc378 authored over 3 years ago by Vincent Musch <[email protected]>

eof

b545d8833f635c9dc155a8b4a8d066fcfb0d077a authored over 3 years ago by Nora Wild <[email protected]>

\r

a633f58f9210d5ba4d369b79132ba7d5dd566174 authored over 3 years ago by Nora Wild <[email protected]>

ProgressLogger

40626c037c8663b991f9b06715ad791cd554158d authored over 3 years ago by Nora Wild <[email protected]>

[FEATURE] filter unmodified sequences by regex in id (#5301)

Co-authored-by: timosachsenberg <[email protected]>

646133936f290b9fdb08d7832f102dd1b2231988 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Horrible if_clause

9a05145e4f32136a9e1071c95a576a4257a9e5cd authored over 3 years ago by valentin-noske <[email protected]>

Merge branch 'develop' of https://github.com/OpenMS/OpenMS into fasta-reader

83d84294e5d36b197ad4e38739a5aba2b72cad11 authored over 3 years ago by Nora Wild <[email protected]>

merge-conflict

dcfc2705ecefd18dee5638aef50d58204e64f530 authored over 3 years ago by kasrat93 <[email protected]>

restructure menu

314cea1b2e4b91194e870bccbf386075e9b607ed authored over 3 years ago by bielow <[email protected]>