github.com/OpenMS/OpenMS-1 commits | Ecosyste.ms: OpenCollective

several little changes vol.2

7d44a38427d4918f6fbc88b7d8d53dc4cd1b211a authored over 3 years ago by Vincent Musch <[email protected]>

severel little changes

9baa2c9a790284270f07d6e380137fcb73762fbc authored over 3 years ago by Vincent Musch <[email protected]>

FIX path

d8934524f0b44fcf573db84cec97b450b7d53f32 authored over 3 years ago by oliveralka <[email protected]>

test

166f796fdb21ce23370a33d043123dbd52944ec8 authored over 3 years ago by oliveralka <[email protected]>

Merge branch 'py_nightly_test' of https://github.com/OpenMS/OpenMS into py_nightly_test

ada8128e1c814bfe4040ef650056f7d1602c2744 authored over 3 years ago by oliveralka <[email protected]>

test cmake then path

72a62c4e03eb9c8f8ddc3dc8d6c4856790d452cc authored over 3 years ago by oliveralka <[email protected]>

try reduce path further

50333a61f68a63cbaccf6fc5d0e83a80f87fec8c authored over 3 years ago by oliveralka <[email protected]>

comments and refactoring

5d3a06a97fd1529728ca76296a769a9ddd1cb26a authored over 3 years ago by valentin-noske <[email protected]>

finaly?

08416b78935ee2eab7c9630af21978801e6b197a authored over 3 years ago by Vincent Musch <[email protected]>

seqalign

3084b220493cdd852f4cb728dc3510197ae674b2 authored over 3 years ago by Nora Wild <[email protected]>

Modified test and formatting

828258b1f865adf23db2ac80ee11637ff9c3a3fc authored over 3 years ago by valentin-noske <[email protected]>

[REFACTOR] moved modified peptide generator to chemistry folder

ed25f68f1c774abc37dabc32a054911f63ebf1ca authored over 3 years ago by Timo Sachsenberg <[email protected]>

rm choco install build tools

2502feea28585c882ac0f2276b8801dd7809901b authored over 3 years ago by oliveralka <[email protected]>

install build tools

637d6908f433c2a14e9372603c2114f665a70fa2 authored over 3 years ago by oliveralka <[email protected]>

merge with upstream

3857cca799c123b89d1d2c4b888ba3eeb1e5f088 authored over 3 years ago by Vincent Musch <[email protected]>

export umbenannt

66ba0a3abb0702719e46e13cd36caa742e05d684 authored over 3 years ago by Vincent Musch <[email protected]>

add reverse

410a680f2b9b3e34a98f2cb474871328e21fee6d authored over 3 years ago by Vincent Musch <[email protected]>

Merge branch 'SeqAlignNew' of https://github.com/kasrat93/OpenMS into seq-align

e332e0a10583a1d45eb792c4891f736c806cb3a2 authored over 3 years ago by Nora Wild <[email protected]>

executables.cmake

5ab8334328b2a5c5d75d65ea120a7afa22ee470b authored over 3 years ago by Nora Wild <[email protected]>

Added coments to PeptideIdentification

97a5e8991a0406ba8341fc0955f4d041ddd6e798 authored over 3 years ago by valentin-noske <[email protected]>

test

e6e5c6f70217a772eaa7c1544e3c514d59b4f85c authored over 3 years ago by oliveralka <[email protected]>

Replace getIndex() && insert final Matrices[26][26]

c09a0524d5149239c33d275ea5fdb898fa53578e authored over 3 years ago by kasrat93 <[email protected]>

Merge pull request #5200 from poshul/RNA_enzymes

[feature] added more RNA digestion enzymes

efcd5afc74e10d103a1e7b6bde40f9fd93330375 authored over 3 years ago by Samuel Wein <[email protected]>

Merge branch 'maxQuant' of https://github.com/vmusch/OpenMS into maxQuant

581e5b041fe67831fbd7139abc9fdac886a3411d authored over 3 years ago by valentin-noske <[email protected]>

Modified test and comments

b1d6987ab8d2c0d34a94ee67374a4cfebc4f813a authored over 3 years ago by valentin-noske <[email protected]>

PeptideIdentification test finish

9f21b62009ea78a4415fd3cd7d4be8e291c820c8 authored over 3 years ago by Vincent Musch <[email protected]>

fillConsensusPepIDMap test fertig

a79f20b277a2bd0a9b29c039fe35ce279e1ef4e3 authored over 3 years ago by Vincent Musch <[email protected]>

Update README.md

e07904a8c569a265f859b8f8f41bc836ce3fcbe6 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Rscript

ac094144b4b195db2478be251d386690f8407655 authored over 3 years ago by Vincent Musch <[email protected]>

Rscript

51604a1966bde6f9e4bc1dfe9533463ad2b5de47 authored over 3 years ago by Vincent Musch <[email protected]>

Merge branch 'seq-align' of https://github.com/noraw61/OpenMS into SeqAlignNew

ec37a2c5016dbb2046da303e07184a396d3f917c authored over 3 years ago by kasrat93 <[email protected]>

set C++17 compile arg win

3d50a16321bb53a34fcab4c457eae3f2125a10f0 authored over 3 years ago by oliveralka <[email protected]>

positive penalty and updatemembers_()

7fc9be655891aa404eaaa2daac4a3c4e19f20a0a authored over 3 years ago by Nora Wild <[email protected]>

set C++17 compile arg win/mac

5430bd065f6aec48f3e25db427dec5aad4c67bd3 authored over 3 years ago by oliveralka <[email protected]>

Merge branch 'RNA_enzymes' of https://github.com/poshul/OpenMS into RNA_enzymes

c3dc3567ce434ade7121e51eb311b0b1ae1ae3eb authored over 3 years ago by Samuel Wein <[email protected]>

Code cleanup and comments

96faf3a89a71dd07f697aa7517d12485d43d79ad authored over 3 years ago by Samuel Wein <[email protected]>

pyopenms set c++17

c2baad260cd781590e0e20a1d69264836721778f authored over 3 years ago by oliveralka <[email protected]>

Merge branch 'develop' into RNA_enzymes

25be7812dbf85962da8328046767746c8d51f32d authored over 3 years ago by Timo Sachsenberg <[email protected]>

Fixed error of potential contaminant

82be1f3fdc895e0194560a78bc4f34273ed5386d authored over 3 years ago by valentin-noske <[email protected]>

fix readlink implementation

f10cda837b2d75eb94e6f9bfba484a756c98d18b authored over 3 years ago by Timo Sachsenberg <[email protected]>

exporter fertig

fcbe9475c9de68b300d57ed3839dd3c7e923b3b0 authored over 3 years ago by Vincent Musch <[email protected]>

check cmake version

c3c76d828813db0073e464b7a3a74b52a5c0a338 authored over 3 years ago by Oliver Alka <[email protected]>

Merge branch 'maxQuant' of https://github.com/vmusch/OpenMS into maxQuant

6df871bbf31000d80fc1bcc4a43f81d6c3b7876c authored over 3 years ago by Vincent Musch <[email protected]>

merge

2b32fcc802db453dc508a7625291354e33142924 authored over 3 years ago by Vincent Musch <[email protected]>

PeptideIdentifications are sorted in QualityControl

078e6572d2b0afe3f8d1e1c7adc4e4c21dae3abe authored over 3 years ago by valentin-noske <[email protected]>

PR fixes

a830b3a649b09c80ce62703d1322b0e92dc432bb authored over 3 years ago by Vincent Musch <[email protected]>

add break

edb665ee595cb889e45687110e2e583fb5848413 authored over 3 years ago by kasrat93 <[email protected]>

getIndexNEW_ for Matrix[i][j]

b8c37163a94f1d06f3da9040101769b71f029d20 authored over 3 years ago by kasrat93 <[email protected]>

[FIX] errors from merge

4346c892369fdd264045dba41ebb04d0b9f7c0f3 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Merge branch 'fix/hendrik_idfile_integration' of https://github.com/OpenMS/OpenMS into fix/hendrik_idfile_integration

cf77512aba3109433f24f3e7fcae0081bbfbd65a authored over 3 years ago by Julianus Pfeuffer <[email protected]>

[FIX] PLFQ new IDdata: Register transferred IDs with Observations from temporary consensus features.

50193edbb78de3692cb606da51eac7fdee2e0d92 authored over 3 years ago by Julianus Pfeuffer <[email protected]>

WIP: Added some comments

eb49370886c2d453df7aaf0d42291ec1c0ef88d8 authored over 3 years ago by valentin-noske <[email protected]>

'DatabaseSuitability' from utils to topp tools in 'ToolHandler' (#5322)

* DatabaseSuitability from utils to topp tools in ToolHandler

* constructor flag

b4bd89fbbcc0d56143eb5a0145ba847210fb3aaa authored over 3 years ago by TomW <[email protected]>

include Test & edit Vector

eb9bb99ee96bf6e31460eca6a52408a1959cd578 authored over 3 years ago by kasrat93 <[email protected]>

[FIX] Support multiple file origins per ProteinID Run in IDDataConverter

12dc5fa3f14bd0aa31c7bbd79609d43c447bfcba authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Vector

f433bc9300e15a54dc3c4f9d8b7c5ed49bde4fb3 authored over 3 years ago by kasrat93 <[email protected]>

FIX additional string

87d80c75248bb24aac43951c20f64926bf36b9b4 authored over 3 years ago by Oliver Alka <[email protected]>

revert PATH; add cmake at later point

75c5cd978cef460cfd6f8bcb6d657fd5417d5560 authored over 3 years ago by Oliver Alka <[email protected]>

Merge pull request #14 from OpenMS/fix/hendrik_idfile_integration

Fix tests; some improvements to IdentificationData

578f76d2538a7e1ea746f727638c473844fc3de2 authored over 3 years ago by hendrikweisser <[email protected]>

rm Cmake from PATH

1396dcce61981e60128b500ef42eed3bb01a7606 authored over 3 years ago by Oliver Alka <[email protected]>

überlauf fehler gefixed

91f2e51f28698be4ad2dfb4d461fe58b39a4355b authored over 3 years ago by Vincent Musch <[email protected]>

udpate param_ will follow

c4d402a9d9c6721e8bef6150d3d6253108efb9ce authored over 3 years ago by Nora Wild <[email protected]>

neue Matrizen

e200a996dc42dff542d5b4a36dad5f807e5d32c0 authored over 3 years ago by kasrat93 <[email protected]>

Merge pull request #5316 from cbielow/GUI-fixes

a step towards better IonMobility support

6828fc8f79d48685352eab5ce8c40562be493d81 authored over 3 years ago by Chris Bielow <[email protected]>

Add extra CMake config settings to Gitpod VSCode

7952a256b0f72d86e5dead6795e2cd9ad359498e authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Update src/openms/source/SYSTEM/File.cpp

c6e070dc3ce505e469c150fd4083650ef7dafa1a authored over 3 years ago by Timo Sachsenberg <[email protected]>

Update .gitpod.yml

fa07736c0474fb4815087e4e3622c2cb92116dee authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Test cmake win; change fix

45304b75d06931df8f1421dd9fe8f3f970f718f0 authored over 3 years ago by Oliver Alka <[email protected]>

Update .gitpod.yml

9e00733fc3b0333e186c0e7d5054394867e1c68c authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Update README.md

4e9990fd628b3f76eff9b684ae235893cedabd63 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Update .gitpod.yml

b9cca10ee2d7bc76cc21aa8b84fadb70957d871c authored over 3 years ago by Julianus Pfeuffer <[email protected]>

Build lib only during gitpod prebuild

5c47edd1abfd58ff32a2ab0f9f21f57ddb174a2f authored over 3 years ago by Julianus Pfeuffer <[email protected]>

diagnostic message

87f5e7f58db340d28251a1179d9741d7fdf249f5 authored over 3 years ago by bielow <[email protected]>

test: fix necessary

02cd857fa324612d6e8891fd49d1e733eabe3e4f authored over 3 years ago by oliveralka <[email protected]>

Exceptions

0547ce9fa82a880af1fed8021e68682a4f4507e2 authored over 3 years ago by Nora Wild <[email protected]>

simple rename

f96491c1b866f20ccb8b5dc02305dd444005062f authored over 3 years ago by bielow <[email protected]>

Fixed QualityControl.cpp

f9f6c48a9a6f6de1697d98bb5627a363d3c7b6c3 authored over 3 years ago by valentin-noske <[email protected]>

Merge branch 'maxQuant' of https://github.com/vmusch/OpenMS into maxQuant

bb33d025620d1b6b357c84e955e9716d13cda816 authored over 3 years ago by valentin-noske <[email protected]>

Modified comments

ea86e8e2f9a13201ff19a1d760d61c1f3816a964 authored over 3 years ago by valentin-noske <[email protected]>

Merge remote-tracking branch 'upstream/develop' into develop

4a056dbbf7ca99d146e63b853084049ff4ed75df authored over 3 years ago by oliveralka <[email protected]>

Merge branch 'maxQuant' of https://github.com/vmusch/OpenMS into maxQuant

38be50a00cca1fc48937c94523bf609bab9c1b3f authored over 3 years ago by Vincent Musch <[email protected]>

PeptideIdentifications fertig

dc2cd4418e1f74d999c192ff411b562c78970944 authored over 3 years ago by Vincent Musch <[email protected]>

Added comments to the functions

e85b2ffdc3a5d75ddea693dbbdc6d54ee5ef4e76 authored over 3 years ago by valentin-noske <[email protected]>

Merge branch 'maxQuant' of https://github.com/vmusch/OpenMS into maxQuant

c370f19ae246b7b7621365b7fd87f07eeda6fd19 authored over 3 years ago by valentin-noske <[email protected]>

ModifiedMQEvidence source and test file

d53bb64de53522ed48e68abf890e3fb5dee43011 authored over 3 years ago by valentin-noske <[email protected]>

NeedlemanWunsch class test

fa95d5fefe68c509ddde42583133da4f84b7a1b1 authored over 3 years ago by Nora Wild <[email protected]>

amend File::path/basename tests

9337fc6227462ca64a41042128c7fa6eacd904ad authored over 3 years ago by bielow <[email protected]>

force users to accept license terms (#5313)

* force users to accept license terms

* disable check if test flag set

* Update MSFraggerA...

c6074d46961b96426093a0ae91e7750f6841530a authored over 3 years ago by Timo Sachsenberg <[email protected]>

fix compile error

92343cb4d0cc1864221748fde14f3330ce636d0e authored over 3 years ago by bielow <[email protected]>

change implementation of basename and path

b52ed8e9a45033701539d49761272277b6770253 authored over 3 years ago by bielow <[email protected]>

lamda in peptideIdentification

1b8168e008aad445ec17f3eacbeebc257dc4bec0 authored over 3 years ago by Vincent Musch <[email protected]>

seq-align working but not yet optimized

5b15e72bbd0690deb353bdac6641eafecb105c33 authored over 3 years ago by Nora Wild <[email protected]>

Update IdentificationData.cpp

cc9d262b067e7858fa65885909c12831e5d9513f authored over 3 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'idfile-integration' into fix/hendrik_idfile_integration

a49803c24b34bba3e4287d30131f24fe1b403935 authored over 3 years ago by Timo Sachsenberg <[email protected]>

Merge remote-tracking branch 'hendrikweisser/idfile-integration' into fix/hendrik_idfile_integration

1c7022b869ca8d9c5230298363da86881910da68 authored over 3 years ago by timosachsenberg <[email protected]>

[FIX] fixed compiler erros in parameter handling

a0b8aa3c7bdd278fbd1f29d0fad2cb445af018be authored over 3 years ago by Hendrik Weisser <[email protected]>

[FIX] fixed compiler errors in parameter definitions

0a326f96149c47a2b9125a42ebd24aeb051ca9e3 authored over 3 years ago by Hendrik Weisser <[email protected]>

Merge remote-tracking branch 'upstream/fix/hendrik_idfile_integration' into fix/hendrik_idfile_integration

86a1c891b0caecf9623d1a368da812855b111332 authored over 3 years ago by timosachsenberg <[email protected]>

make inputfile mandatory in observation

66774fb5b6defb2f40eede1a18d17d602a9b4c78 authored over 3 years ago by timosachsenberg <[email protected]>

Merge branch 'develop' of https://github.com/OpenMS/OpenMS into idfile-integration

567f0cc93c32a1a3bb436ac1db4d8e8f3fa50330 authored over 3 years ago by Hendrik Weisser <[email protected]>