Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS-1

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS-1

Update openms_clang_format_add_and_commit.yml

22ce99cffbc55d4aeae09b7a6e2b4d05b32d5e6a authored over 2 years ago by Timo Sachsenberg <[email protected]>
Addressing Chris' comments - ing

877328f90437a4f97aaa295cb3100d7ac42b61c3 authored over 2 years ago by kyowonjeong <[email protected]>
Update openms_clang_format_add_and_commit.yml

2d524406e96b4fb07e5d2e6ed43f0ccf315d0969 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update openms_clang_format_add_and_commit.yml

71efa1c6614946ac5ee181b9987fba6c15a00443 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update openms_clang_format_add_and_commit.yml

ff84792010afbed77986a52b26d10b1f5fa934e5 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update openms_clang_format_add_and_commit.yml

cb2356609328b27be708a611e1b43edceb4b7faf authored over 2 years ago by Timo Sachsenberg <[email protected]>
[FIX] made OpenPepXL output compatible with conversion to OMS format (#6034)

* [FIX] made OpenPepXL output compatible with conversion to OMS format

* [TEST] updated OpenP...

887d1f3056ae1e7bbc1733a910dba5df33502e0e authored over 2 years ago by Eugen Netz <[email protected]>
added WizardHelper class to be shared with other Wizards (#6033)

* added WizardHelper class to be shared with other Wizards

* Update src/openms_gui/include/Op...

d5d3d7e81aa05bab1cd8868a7356ca67b8f71c7c authored over 2 years ago by JihyungKim <[email protected]>
[FIX] BasicStatistics: reasonable results with vectors of zeroes (#6029)

* [FIX] BasicStatistics: reasonable results with vectors of zeroes

`BasicStatistics` `mean_` ...

e7445b02ce539f7344bccaf0ef1c38aa79de3587 authored over 2 years ago by Eugen Netz <[email protected]>
Addressing Chris' comments

ec3950b306a8f3fa9086ef1b7cbaab53c33addbc authored over 2 years ago by kyowonjeong <[email protected]>
Addressing Chris' comments

5c358718a2853de8001345fcef7a789a144d0c13 authored over 2 years ago by kyowonjeong <[email protected]>
Update openms_clang_format_add_and_commit.yml

f325721b95ac62ba512158e50169dea16ae0925e authored over 2 years ago by Julianus Pfeuffer <[email protected]>
[TEST] move DimMapper to OpenMS lib; add test

78b3508a79456c1bd6e59ccdf51da40e11e64481 authored over 2 years ago by bielow <[email protected]>
added some convenience functions

c3cc31c2c53380cc9bb461f37baf7cfc7c87c6c2 authored over 2 years ago by bielow <[email protected]>
extend ClassTest with simple TEST_TRUE / TEST_FALSE macros

dc4a5669b3f45a43eab3a73b448c6f462f1cebe1 authored over 2 years ago by bielow <[email protected]>
Merge pull request #6023 from Waschi97/feature/TSGDialog/EmpiricalSpectra

[Feature] Added Metabolite Isotope Calculation to TSGDialog of TOPPView

0f624db7513e5b94f554eb91de6fc6f23edcc086 authored over 2 years ago by Chris Bielow <[email protected]>
added metabolite support to changelog

9dfae921ba930465195a3f2f6c40709e96b22499 authored over 2 years ago by TomW <[email protected]>
push changes in clang-format commit action

11cf8f7b1acb8d16ba47753398e0bdb6bd60c506 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Update openms_clang_format_add_and_commit.yml

33774fd9b3f9633a7f6f9b0015fefb6f11588fce authored over 2 years ago by Timo Sachsenberg <[email protected]>
update clang format action

0930c1ad9d4cd6608a91ea204a16a9147e0f33e1 authored over 2 years ago by Timo Sachsenberg <[email protected]>
[LOG] fixed typos

6f995504eff432ba24bdd83652674ea9d82645e7 authored over 2 years ago by Hendrik Weisser <[email protected]>
remove FuzzyDiff with FLASHDeconv_test

bd254914dc242fb1c9c39c76424612881e5ef3e7 authored over 2 years ago by JeeH-K <[email protected]>
updated test files

601aa1ec542ec7f50d9b1691550661e2732b900b authored over 2 years ago by JeeH-K <[email protected]>
revert to "mass_error_da_" version

c09d98a168d7bbe16318454018b6b4fa47f74337 authored over 2 years ago by JeeH-K <[email protected]>
wrap static methods as free functions

484475b0c6a95bbd6094c043e75b2a05177aa778 authored over 2 years ago by axelwalter <[email protected]>
Merge branch 'feature/wrap-IIMN' of https://github.com/axelwalter/OpenMS into feature/wrap-IIMN

07e7a7c00b3c43820f08f13675a9d4f4774b92c9 authored over 2 years ago by axelwalter <[email protected]>
test: removed unnecessary argument, moved some code out of loop

78b520077af63c7832424bb02328b1bcfd461f13 authored over 2 years ago by Tom Waschischeck <[email protected]>
removed setting combo box in Ctor, comments

3735cea505af8bf06d26b13948a15ae4e4ad81f9 authored over 2 years ago by Tom Waschischeck <[email protected]>
added isotope settings to isotope model group box

4de07e21f5e1cdb2376563acfa3c80f417a784e7 authored over 2 years ago by Tom Waschischeck <[email protected]>
some QV to QV2 with message, re-added seqTypeSwitch_() in constructor

b68fc06cda7087bb9f129017aad4c227647eafe6 authored over 2 years ago by Tom Waschischeck <[email protected]>
[CMake] Add newer boost versions to search for

3f681140946b14b457eaa8c62a85159f5d3f126d authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feature/FLASHDeconvOnly

9dd5cab7ddd7ac7f074cca2823e0af7d5cc3c9ee authored over 2 years ago by Timo Sachsenberg <[email protected]>
wrap IonIdentityMolecularNetworking

21e5840a9d97b48a6cc704ca2de085c64afd6da7 authored over 2 years ago by axelwalter <[email protected]>
add pyopenms test for IIMN

470caf644ef6d77aa69253967432d9d313e7ac78 authored over 2 years ago by axelwalter <[email protected]>
Merge pull request #6021 from enetz/fix/linear_transform

Fix/linear transform

2a4ab5baf6c2fa65e72a6088a831e88a92ca84b4 authored over 2 years ago by Eugen Netz <[email protected]>
minimal revert attempt to fix SVMWrapper_test (#6022)

* minimal revert attempt to fix SVMWrapper_test

* full revert of test

6a4c2349b113e280e978c5e4c16895f04e96e206 authored over 2 years ago by Timo Sachsenberg <[email protected]>
some comments

59b22c424352f7603a6f51cf9b64be205d4ae479 authored over 2 years ago by Tom Waschischeck <[email protected]>
comments to doxy, some renaming, new enum for seq type, const members

f555d501db180e26c1589d5c4692bc0d71912684 authored over 2 years ago by Tom Waschischeck <[email protected]>
Merge branch 'develop' into feature/FLASHDeconvOnly

b1a4485e50d44b4451bc189d7d24f313a8db25d1 authored over 2 years ago by JihyungKim <[email protected]>
changed isotope probability label

853afd2b56562790843dc26e50d5af5db62268d9 authored over 2 years ago by Tom Waschischeck <[email protected]>
updated CHANGELOG file with FLASHDeconv description

df9ec862fed0771d1d76f57f6f3933cf30a097ae authored over 2 years ago by JeeH-K <[email protected]>
Change used progress logger to OpenMS ProgressLogger

eb4f1966e74a0c4c633fb32b3d0bb13e5675e235 authored over 2 years ago by JeeH-K <[email protected]>
add pyopenms test for IIMN

1667d2153d694b3c096be50679981a188b9df955 authored over 2 years ago by axelwalter <[email protected]>
polish test files

7a2a5d1410f561f8db3777c7cf3461fe244b77d0 authored over 2 years ago by JeeH-K <[email protected]>
test adapted for new data structure, also fully testing new input methode

db1600f2a4e90ba144da0fb7cbcf7b2ba24c12a5 authored over 2 years ago by Tom Waschischeck <[email protected]>
new data structures for checkbox-spinbox-correlation

fb7605c25898de9ca35315a0ca0d9c65ec5119f0 authored over 2 years ago by Tom Waschischeck <[email protected]>
TransformationLinearModel: refactored manual exact solution

8ba9e85caf94edf75a44b6c9ad2d5581e2e22ea8 authored over 2 years ago by Eugen Netz <[email protected]>
Using exact solution instead of least-squares fit

Also added exception in case the solution doesn't work.

573dceedf894176c81c404af7aa51b670f57c402 authored over 2 years ago by Eugen Netz <[email protected]>
[COMMENT] updated authors

4b4842d610d89b522df73b9749aa25ecab990349 authored over 2 years ago by Eugen Netz <[email protected]>
[FIX] added a special case to linear model fitting

Least-squares fitting with `Wm5::HeightLineFit2` can fail with two points that are too close to ...

5eb2d6f60e40538a94f8ae5c4c84a9ab53765d3e authored over 2 years ago by Eugen Netz <[email protected]>
wrap IonIdentityMolecularNetworking

f402d2f825c1f464944196e68e7c47b6403c8bed authored over 2 years ago by axelwalter <[email protected]>
isotope size 0 check added to getApexIndex etc. in FLASHDeconvHelperStructs.cpp

671d045b7fc4271e7b1e43134bca781865bde166 authored over 2 years ago by kyowonjeong <[email protected]>
merging develop

76bfd581a7cac0cb7986ba6c527ebfdde7449047 authored over 2 years ago by Tom Waschischeck <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop

ac4a97ef235f9c27ad89f011b4d35a7ae83710d3 authored over 2 years ago by Tom Waschischeck <[email protected]>
remove rebase action (now provided by github)

114144fe5c0b5ab0b1d623b055a4e45034e194c3 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update VS22 second try (#6020)

* reset contrib

* array includes

* update contrib to master

6db36146ff779d2b19c79fd8960ebc524cf7f6d7 authored over 2 years ago by TomW <[email protected]>
fix url (#6018)

c4fa7f37d90d5de088ff08639e0a92a4b21c6af4 authored over 2 years ago by M Bernt <[email protected]>
updated SpectraMerger changes from feature/FLASHDeconv

c50de2624ecd2f636cf9339509065e0c7d487c32 authored over 2 years ago by JeeH-K <[email protected]>
Merge branch 'feature/FLASHDeconv' into feature/FLASHDeconvOnly

# Conflicts:
# src/openms/include/OpenMS/ANALYSIS/TOPDOWN/FLASHIda.h
# src/openms/source/ANALYSI...

5789efdd5ff943548db9a573d7a1bd775f8b0260 authored over 2 years ago by JeeH-K <[email protected]>
Timo's comments are being addressed 2

ebcbe883c58733e2c66f79c4c301a1f6455c1876 authored over 2 years ago by kyowonjeong <[email protected]>
Timo's comments are being addressed

7f43eb935e4da8d09c26fe2ebf1a410092372d94 authored over 2 years ago by kyowonjeong <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop

0b9f8a1cd45d60d9302388713a585f83fa3bc23f authored over 2 years ago by Tom Waschischeck <[email protected]>
reset contrib

74c1ac4a8a2a1aa6a622bd8c649b8cce1b53ea50 authored over 2 years ago by Tom Waschischeck <[email protected]>
Cleaning

f8323b568145dc12b354857caff33ae7702ce8c9 authored over 2 years ago by bertrandboudaud <[email protected]>
Deconvoluted -> deconvolved rename done.

2f1082b91af59bad5739e3b22f49d5f40be90208 authored over 2 years ago by kyowonjeong <[email protected]>
Target mass bug for all MS levels

79c4e3d64fe161d862221d920dc12bd963be63f6 authored over 2 years ago by kyowonjeong <[email protected]>
Merge branch 'feature/FLASHDeconv' into feature/FLASHDeconvOnly

feature/FLASHDeconv version: 9e83c9e

6786c987d483e73aa3029bc5cc446d08faea365b authored over 2 years ago by JeeH-K <[email protected]>
Fix failing IM tests (issue #4339) (#6017)

* Fix failing IM tests

IM tests that failed was the one that had 0 MS1 and 0 MS2 transitions
...

4644b57c60a511d448447929e394aa113f3286b8 authored over 2 years ago by Joshua Charkow <[email protected]>
saving preliminary state

ea586499bf479d13ff9984a5dab21bce07dcecab authored over 2 years ago by Tom Waschischeck <[email protected]>
Merge pull request #6016 from OpenMS/fix_external

fix external project

f74f3eed0bdcc4e03f96142f34e7e85efdd6107f authored over 2 years ago by Chris Bielow <[email protected]>
Merge pull request #6002 from Waschi97/feature/TSGDialog/Test

[TEST] GUI test for TheoreticalSpectrumGenerationDialog

c7d2a3490bb411d9c61400cd1c043e6ce4b49ec7 authored over 2 years ago by Chris Bielow <[email protected]>
fix external project

4b17789411fb47f629b81e6f9fd3741b1b8f6b41 authored over 2 years ago by Chris Bielow <[email protected]>
Merge pull request #6015 from OpenMS/jpfeuffer-patch-5

fix and move pyopenms whls before they get deleted again on lnx

aca4ce313076272f318effeb6d25c091c92029bc authored over 2 years ago by Julianus Pfeuffer <[email protected]>
fix and move pyopenms whls before they get deleted again on lnx

db058fb8b137574408df0afa0e6297a5c587322f authored over 2 years ago by Julianus Pfeuffer <[email protected]>
revert romval of arginine loss

9abfbe3eef88ea1c2a948e825c864714e3f60059 authored over 2 years ago by Timo Sachsenberg <[email protected]>
prototype dim_mapper

0dc6351672906d44639379bbb48009c8296f8f11 authored over 2 years ago by bielow <[email protected]>
fix warning

e3ba8d901d01d5f7a21fc27051b53c7fa5dd5ead authored over 2 years ago by bielow <[email protected]>
move noise filtering into canvas

179da72928bc72aab631a48967438ecee8908b91 authored over 2 years ago by bielow <[email protected]>
some simplification

3662f7afbf787bb19f08dda5c50c70287bfd1c55 authored over 2 years ago by bielow <[email protected]>
Merge branch 'update/VS22support' into feature/TSGDialog/EmpiricalSpectra

833817dd7d2340d1df4ccef847b69f243d663d33 authored over 2 years ago by Tom Waschischeck <[email protected]>
fix warning

c52ec9d010f5be8166e4f77290bee6d20397d10d authored over 2 years ago by bielow <[email protected]>
String QString conversion

775ed12de2012761fcfb8509727781d9bcfcd400 authored over 2 years ago by Tom Waschischeck <[email protected]>
Store retention time in msp files

b3754e5fdd433afc92c884fa5e0aaafe99175488 authored over 2 years ago by bertrandboudaud <[email protected]>
Store MSP: do not store spectrum with no peaks.

0bc944378b9a0c4f4b9e3685052bdef30a14ddf0 authored over 2 years ago by bertrandboudaud <[email protected]>
Added one option to return unknown feature in searchSpectrum

f221055deb1304a2d70fb5b3ab208db52f7d91ca authored over 2 years ago by bertrandboudaud <[email protected]>
Removed debug traces

a8de3f79492333f381a7693017a00623a0f0b904 authored over 2 years ago by bertrandboudaud <[email protected]>
Store retention time in msp files

d2dbfcbded04b71e4a28e1a364f92bd1bd11d126 authored over 2 years ago by bertrandboudaud <[email protected]>
Added one option to return unknown feature in searchSpectrum

94a8d5250dbffaf816ee4934e7fdb83dd6179f33 authored over 2 years ago by bertrandboudaud <[email protected]>
Removed debug traces

0dbc87d60f7329520c429ff709539a61184fcaed authored over 2 years ago by bertrandboudaud <[email protected]>
Store MSP: do not store spectrum with no peaks.

514cd713a0b32efd1df35547749bf12c753a5b53 authored over 2 years ago by bertrandboudaud <[email protected]>
storeSpectraTraML renamed constructTransitionsList

429c5f04ee2bfc3f25e9ab08cb67a40821b076d1 authored over 2 years ago by bertrandboudaud <[email protected]>
Added new extractSpectra method for DDA

946808467670a3638f4d1e37a991ca1952d300fa authored over 2 years ago by bertrandboudaud <[email protected]>
Fixed doc

9e1a02729a60f3aa61dca691d9fd6ad8a3c86791 authored over 2 years ago by bertrandboudaud <[email protected]>
Merge pull request #6013 from OpenMS/jpfeuffer-patch-5

[FIX] Make plotting.py more robust

4fe1d96c5a03eea86d3059feb967b03dcc439380 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
fixes https://github.com/OpenMS/OpenMS/issues/4448

removed
arginine->addLossName("");
arginine->addLossFormula(EmpiricalFormula("CONH2"));

8464efb2debf9c3be1ca237968a5bcc6c5333c86 authored over 2 years ago by Timo Sachsenberg <[email protected]>
[FIX] Make plotting.py more robust

53dee72d99fb1e8540c72598bf3a31563436394a authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6007 from OpenMS/pyopenms/typehints

Add type hints to openms conversion providers

13a4908faae4c6e814168ff6617b81bc92edca82 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
fix Typo

fdc1ad28962cd0ec85bdcc84fb30c401e9d9339f authored over 2 years ago by bielow <[email protected]>
some speed improvements in plotting

5b0dcbde3b5bdf6cd1cfd64e52b7aa86d9fabe4e authored over 2 years ago by bielow <[email protected]>
coinor and boost updated

cfadeac691dafe013ce4694e5570666810cc7122 authored over 2 years ago by Tom Waschischeck <[email protected]>