Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS-1

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS-1

add MapRTTransformer step in GNPSExpoert docs

c2a2b6e2f84defa1ea8069fd6df879224e67a68a authored over 2 years ago by axelwalter <[email protected]>
added include for nan

609f43540c5f3362a963e07c0fd012c35feed29e authored over 2 years ago by bielow <[email protected]>
fix type

55e6354a4e4848a2924d7fe17c06d5888520ead3 authored over 2 years ago by bielow <[email protected]>
fix test

e82da92be4fc806b572fe895b226e78f31f80b52 authored over 2 years ago by bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into idfile-json-export

c460463b359ba51a375c4142488965a816ee2d49 authored over 2 years ago by Hendrik Weisser <[email protected]>
[NOP] added space in SQL query

268642fc41eab9e842e2ce51aeb8334ec8036697 authored over 2 years ago by Hendrik Weisser <[email protected]>
merge

36cb684e2b4900536efa02ebb1b7710bbf84825a authored over 2 years ago by bielow <[email protected]>
added MobilityPeak1D and Mobilogram

bfe2b6ddc361dadfeb358cb1fb01b2a6da98f0d5 authored over 2 years ago by bielow <[email protected]>
Some more cleanup.

e7d546d3101cc63d01502b48bef21f568f2e44bf authored over 2 years ago by Virginia Rossow <[email protected]>
added MobilityPeak1D and Mobilogram

0322986419beacef781535b39525b85b1b36b191 authored over 2 years ago by bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into refact_toppview

# Conflicts:
# src/openms/include/OpenMS/CHEMISTRY/EnzymaticDigestion.h
# src/openms/include/Ope...

ebf09aec5ee3657b5a0d2de01352b360229abfca authored over 2 years ago by bielow <[email protected]>
add mobility datastructure mockup

7ff8b5ba0a7542e681c6da16c7d0c9e0c55a29d5 authored over 2 years ago by bielow <[email protected]>
update test files

320c238b39edc96dcac82a495da2b9a889555cc0 authored over 2 years ago by axelwalter <[email protected]>
[pyOpenMS] fix modifiedPeptideGenerator

4d2768eb33055fdfb4301e94a5434e4bd84bd09d authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6207 from cbielow/compile_time_opt

reduce compile time

b93fab574bac7071efad8c6c00ca61fe61700a5f authored over 2 years ago by Chris Bielow <[email protected]>
write meta value headers function

af641bcf4d90b9fc9c9788a28824ff938e45097a authored over 2 years ago by axelwalter <[email protected]>
update tests

34e316b1f6ffdcd709645717a8253e5f37176c6b authored over 2 years ago by axelwalter <[email protected]>
add metavalue export for consensusXML

716dca076e6993b7ae498e20ed60c202539d86d0 authored over 2 years ago by axelwalter <[email protected]>
add assignement

2b8648b5095188d7daaedd14d4ccf537a70fe775 authored over 2 years ago by bielow <[email protected]>
Merge remote-tracking branch 'origin/origin/compile_time_opt' into compile_time_opt

befdf571ca3dfda9e2f48ecf064eb525e9f4e69b authored over 2 years ago by bielow <[email protected]>
switch to unique_ptr to avoid mem leaks and worse..

169eba70286539baf9fb4664f2b5f90c4cc72a9b authored over 2 years ago by bielow <[email protected]>
Update src/openms/include/OpenMS/DATASTRUCTURES/DateTime.h

Co-authored-by: Timo Sachsenberg <[email protected]>

064fd11c624f923429dfeac2bb5f89e828211438 authored over 2 years ago by Chris Bielow <[email protected]>
reduce compile time

e6fee28c231221969c11771fa9b031391a940fe4 authored over 2 years ago by bielow <[email protected]>
Merge branch 'refact_toppview' of https://github.com/cbielow/OpenMS into refact_toppview

60ed4593626de9eb120154e513e3a6ae2b3c34d7 authored over 2 years ago by bielow <[email protected]>
reduce compile time

d9cc6ffb8b344975eada8da4bcaec87498b16fb8 authored over 2 years ago by bielow <[email protected]>
fix projection and point scaling for IM data

62e140cac852a4b74d9d6352862e6098e9cfeae3 authored over 2 years ago by bielow <[email protected]>
some changes in MQExporterHelper

d776a9119e6ab3566a65f6d1df02861598e8195e authored over 2 years ago by beschorneh32 <[email protected]>
Merge branch 'maxquant-output' of https://github.com/vrossow/OpenMS into maxquant-output

582cd152d5096bdf23e84453a6842c2bfa26955a authored over 2 years ago by Virginia Rossow <[email protected]>
Implemented suggestions in Evidence and Msms

14540875b7f6cfeccee9e849c10c87ec4503bfa0 authored over 2 years ago by Virginia Rossow <[email protected]>
fix projection and point scaling for IM data

16762b296af48f924f9491685952401269e9bf6f authored over 2 years ago by bielow <[email protected]>
Big performance boost by introducing recurteAllPeaksInSepctrum in PeakGroup.cpp. Changing PeakGroup so scoring is included inside as private functions. Tested for dna, complex, histon, and standard

27046dd785c541ec742064b1b561fca52ae1231f authored over 2 years ago by kyowonjeong <[email protected]>
Big performance boost by introducing recurteAllPeaksInSepctrum in PeakGroup.cpp. Changing PeakGroup so scoring is included inside as private functions. Tested for dna, complex, histon, and standard

3300de5d5274b478637d5070c2e728e671263191 authored over 2 years ago by kyowonjeong <[email protected]>
Big performance boost by introducing recurteAllPeaksInSepctrum in PeakGroup.cpp. Changing PeakGroup so scoring is included inside as private functions. Many bugs on harmonic have been removed.

751b8778a95e794f3c0c94c1a20b8f74d2f66cb8 authored over 2 years ago by kyowonjeong <[email protected]>
support 2D IM Frames: zooming and selected_peak text

9ce615bb1343cfff300dd75cdeb889c3be48b983 authored over 2 years ago by bielow <[email protected]>
Merge branch 'idfile-json-export' of https://github.com/hendrikweisser/OpenMS into idfile-json-export

cb13c15014ee34539972a8179b24a5ad24cff82d authored over 2 years ago by Hendrik Weisser <[email protected]>
[TEST] updated JSONExporter test files to recent changes

ec88c800144a234f1b867ed3fee971621410c1fc authored over 2 years ago by Hendrik Weisser <[email protected]>
[FEATURE] include version information in .oms export to JSON

0b0995d4b6faf6ea47da38b4fafa00285e0d6a76 authored over 2 years ago by Hendrik Weisser <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into idfile-json-export

51fb503836dd6060927e86d0dca3fa96fa8dc603 authored over 2 years ago by Hendrik Weisser <[email protected]>
[COMMENT] add to-do comment (JSON export of protein groups)

9b45bbe586c7e781dabb02879c2a02bc29c90d61 authored over 2 years ago by Hendrik Weisser <[email protected]>
Fixed the Test, changed the filename of the additional_info_file and made some minor fixes in QualityControl

d4b169155facbb0e39416c16076a75ee045f82f5 authored over 2 years ago by lennykovac <[email protected]>
Big performance boost by introducing recurteAllPeaksInSepctrum in PeakGroup.cpp. Changing PeakGroup so scoring is included inside as private functions. 70% done.

730151e86d9a6451e7b43ffa03610b9e282ae7f3 authored over 2 years ago by kyowonjeong <[email protected]>
minimal support for IM Frame data in 2D

bf132c6d28eafb2826d1fff5a07d41020ad211d0 authored over 2 years ago by bielow <[email protected]>
Merge pull request #6196 from OpenMS/Delete-uncrustify-config-and-uncrustify_branch.sh-file

Delete uncrustify config and uncrustify_branch.sh file

23e67e187650b0b656d6343cf7c977da738d1b40 authored over 2 years ago by Samuel Wein <[email protected]>
Big performance boost by introducing recurteAllPeaksInSepctrum ins PeakGroup.cpp. Changing PeakGroup so scoring is included inside as private functions. 50% done.

ff855adcf17af05aa45e10e2df80e128616b80fd authored over 2 years ago by kyowonjeong <[email protected]>
Add CMake test explorer to gitpod

4643431f4026f02622b35d1154cd5c6e6ad617eb authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Big performance boost by introducing recurteAllPeaksInSepctrum ins PeakGroup.cpp. Changing PeakGroup so scoring is included inside as private functions.

35c188033b1dfabe175c086c785c08710d4469b4 authored over 2 years ago by kyowonjeong <[email protected]>
fix, wip: debugging spectral library matching

13a201d4407a07a7c1698b7c9cd1d0da27908160 authored over 2 years ago by dmccloskey <[email protected]>
Big performance boost by introducing recurteAllPeaksInSepctrum ins PeakGroup.cpp. This function collects all peaks from each mass before scoring. Fine tuning will follow.

da5512d3bac82582953fcbb956e4d879019b22bd authored over 2 years ago by kyowonjeong <[email protected]>
Big performance boost by introducing recurteAllPeaksInSepctrum ins PeakGroup.cpp. This function collects all peaks from each mass before scoring. Fine tuning will follow.

d2224d1a5ff6cc2810f35f4b6462e40c1e184560 authored over 2 years ago by kyowonjeong <[email protected]>
fix, wip: refining matchSpectra and library generation routines

d12d83330c3f4f7677fddfc93bb9bc92aa6858dd authored over 2 years ago by dmccloskey <[email protected]>
fix: cleaned up AnnotateSpectra to reduce reudandant code

f9733c175d99937a393fd99bfb8dda4fdae956d5 authored over 2 years ago by dmccloskey <[email protected]>
+ allow showing a single spectrum in 2D view (fix RT margins)

+ update axis when switching intensity mode

8a15772cfc9329b57705d66e0b65ceaceb20cae5 authored over 2 years ago by bielow <[email protected]>
support Chroms in 1D natively

lots of fixes and simplifications

d2621c3392e848d2331a206428778a62407c355e authored over 2 years ago by bielow <[email protected]>
fix: updated ConstructTransitionList transition creation logic to account for duplicate names and RTs

18e4ab03d2c757debdeccb9131131a06089b06e5 authored over 2 years ago by dmccloskey <[email protected]>
Merge pull request #6173 from OpenMS/fix/psmpepfdr_plfq

[Fix] PSM and Pep FDR in PLFQ

394b1492e732625f44b4036f8a873a22258d15cc authored over 2 years ago by Julianus Pfeuffer <[email protected]>
removed uncrustify_branch.sh

3ea5b86134d102bf2475f084476ebd286ef6d079 authored over 2 years ago by matteopilz <[email protected]>
Delete uncrustify.cfg

d9b392e1efd91de8fcfd879b398a15358fe9af1a authored over 2 years ago by Matteo Pilz <[email protected]>
Bug fixes in negative MS mode

844920b868457c285c3399b7e771c19129d06fbf authored over 2 years ago by kyowonjeong <[email protected]>
fix: bugs from merge

d1b04f5cf1f9fb4e2386d0a62d3bd1491c38c2a6 authored over 2 years ago by dmccloskey <[email protected]>
Merge pull request #6167 from tapaswenipathak/delete-dups

Delete: duplicate pages in openms rtd and doxgen

9905029a1d9b5e8e65c1387f322abd0f835e76c6 authored over 2 years ago by Samuel Wein <[email protected]>
Merge branch 'delete-dups' of github.com:tapaswenipathak/OpenMS into delete-dups

75e150f6dc6ad532b214357be068dd0d0abf0f55 authored over 2 years ago by Tapasweni Pathak <[email protected]>
Add OpenMS tut pages on RTD

7a704cc3b25282ab3b2acc101b86d028a2f05d25 authored over 2 years ago by Tapasweni Pathak <[email protected]>
Add TOPPAS Tutorial RTD link

602a9f50f56c551b09ac3d6a3a01a28ca5d5d9d0 authored over 2 years ago by Tapasweni Pathak <[email protected]>
merge develop

efb805ca3e7b5bc567558c3cbe179ff25c6b63f9 authored over 2 years ago by dmccloskey <[email protected]>
Merge branch 'develop' into delete-dups

588f514dc34f16189b3a662fda32ca02132393fc authored over 2 years ago by Tapasweni Pathak <[email protected]>
Merge branch 'develop' into fix/psmpepfdr_plfq

0add0f4b09a1220d6abc56e88bba135db8092a93 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6193 from bertrandboudaud/fix/pyOpenMS_storeSpectraTraML_not_found

Fixed pyOpenMS build: storeSpectraTraML has been renamed constructTra…

7fcfaf66fee9678713faf759b8b2dbda39610585 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Fixed pxd for extractSpectra

8d132e137c4a8814f6340b21295ccb042fa6dab8 authored over 2 years ago by bertrandboudaud <[email protected]>
Fixed pyOpenMS build: storeSpectraTraML has been renamed constructTransitionsList

fd4c8bef86cfc4e21f3622e23a6bba6d03a9e617 authored over 2 years ago by bertrandboudaud <[email protected]>
Merge branch 'develop' into fix/psmpepfdr_plfq

659e9c93f1a919b538e05fd701094a151db38b14 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
[FIX] some style and pyopenms

7295a715ec305f754e3c3c3edc2c62a79ef600a9 authored over 2 years ago by jpfeuffer <[email protected]>
[FIX] Last fixes for pepFDR in plfq

6aaaebff8030edf436741a93c8e446149b95a741 authored over 2 years ago by jpfeuffer <[email protected]>
Merge remote-tracking branch 'upstream/develop' into feature/FLASHDeconv

f8eab28b3ada5d570d4cebfafdf646be2711d2e9 authored over 2 years ago by JeeH-K <[email protected]>
Merge pull request #6182 from OpenMS/new_doc_categories_for_tools

Update TOPP.doxygen

851f10050549407512a42c1b87f90d9d8c49f83e authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into delete-dups

ce984968136806f59ae86f35426923a66e82d561 authored over 2 years ago by Tapasweni Pathak <[email protected]>
fix a grammatical error

Co-authored-by: Julianus Pfeuffer <[email protected]>

f14a897e31e76008c86e55384f4b72efd491e62c authored over 2 years ago by Tapasweni Pathak <[email protected]>
Merge pull request #6186 from greengypsy/fix_indentation_developer_faq

fixed indentation in developer-faq.doxygen by adding closing ul tag

7a84a045758b2704b60122a08614c7b4a2d40bdc authored over 2 years ago by greengypsy <[email protected]>
fixed indentation in developer-faq.doxygen by adding closing ul tag

4b71662e88ee048adbd6912e6ca664e02346604f authored over 2 years ago by greengypsy <[email protected]>
Apply suggestions from code review

Co-authored-by: Julianus Pfeuffer <[email protected]>

8adb0d587092f8c2aba89c854b15c60a6fb09ad9 authored over 2 years ago by Timo Sachsenberg <[email protected]>
fixing typo

9d13c7cd1e50fd7ccb943470f816ff6038f2ae54 authored over 2 years ago by JeeH-K <[email protected]>
Update TOPP.doxygen

738509fb1243d9f4907efa8fae19f9e3b02b6877 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6180 from bertrandboudaud/fix/unknown_feature_counter

fixed compilation error unknown_feature_counter unused variable

381879df9c4d94865746a0655fe8a11072897b01 authored over 2 years ago by Timo Sachsenberg <[email protected]>
fixed compilation error unknown_feature_counter unused variable

0fbf19089bf92fb03967cd848f02fcb9f9010188 authored over 2 years ago by bertrandboudaud <[email protected]>
fixing typo

730c626bb25c5df4919f5d86e08185f20e60f42c authored over 2 years ago by JeeH-K <[email protected]>
Merge branch 'feature/FLASHDeconv' into feature/FLASHDeconvOnly

d02f74aed47ae2510cb52aab8a82963b490aa148 authored over 2 years ago by JeeH-K <[email protected]>
Merge remote-tracking branch 'upstream/develop' into feature/FLASHDeconvOnly

a24a02457c8da8614477ccaf74775cd895c5393d authored over 2 years ago by JeeH-K <[email protected]>
polishing codes to remove warnings

be4647695b6b21c9f146748d33991ccfe31d1eb4 authored over 2 years ago by JeeH-K <[email protected]>
Merge branch 'develop' into fix/psmpepfdr_plfq

68bf5b52c0b934cbeb8d4fdf0b40b5a18deb318f authored over 2 years ago by jpfeuffer <[email protected]>
[FIX] Some docu changes. Always keep all PSMs also with Bayes.

35f4a7b709d8042e9801975f2198f495992ab2ca authored over 2 years ago by jpfeuffer <[email protected]>
Merge pull request #6174 from OpenMS/fix/better_error_message

Update XMLHandler.cpp

97d7742022572cd9f1eeae92e9b440ae7dc9e843 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/FLASHDeconv

d0b3123cb8666a8f56a6b83391f0694bf07ad29b authored over 2 years ago by JeeH-K <[email protected]>
fixing bugs for ctests

ff484ed189480c27a2047e9b5676502b5b65b1cf authored over 2 years ago by JeeH-K <[email protected]>
Merge pull request #6106 from bertrandboudaud/feature/searchSpectrum_extended

Feature/search spectrum extended

1d4f5c9f50346e5bffa344977acf2e28e6c0d797 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update XMLHandler.cpp

better error message if run identifiers are not unique

e5d7f19e6ac2d3e21e6bf11300f540095fca1f90 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Cleaned up some comments

ea3a6f945c59625224e142124bb4ac90aaccb669 authored over 2 years ago by Virginia Rossow <[email protected]>
fixes

d237a406430c5633de3efd36929a028f99c44aec authored over 2 years ago by jpfeuffer <[email protected]>
Merge pull request #6145 from greengypsy/convert_to_doxygen

Add OpenMS wiki pages to OpenMS API reference Doxygen documentation

831ee90f501f53c9d5496a100b3b869b1d2acf15 authored over 2 years ago by greengypsy <[email protected]>
Merge branch 'fix/psmpepfdr_plfq' of https://github.com/OpenMS/OpenMS into fix/psmpepfdr_plfq

3b27b3db423d5110c71fff5522b11e9ea0d16a19 authored over 2 years ago by jpfeuffer <[email protected]>
[FIX] FDR applyBasic. Add pepFDR to PLFQ.

0072ee36622dcb3befcca2c956f04c8b32a443b6 authored over 2 years ago by jpfeuffer <[email protected]>
[FIX] FDR applyBasic. Add pepFDR to PLFQ.

56345ff458983139d29a8cf4985233239a5746cb authored over 2 years ago by jpfeuffer <[email protected]>