Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS-1

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS-1

fix include (#6259)

3d9b1cc6c70caaffa12d9bdbd77a2e9aa5326c94 authored over 2 years ago by Samuel Wein <[email protected]>
Codefactor fixes

c02c2a67aa5c151a5d18159c1f8e686b2363dcc2 authored over 2 years ago by bielow <[email protected]>
fix initialization of members

601af94b149dc767a645af654102fa0a228da8ef authored over 2 years ago by bielow <[email protected]>
fix compile errors

1332df94d996bf53d80264231bffcc025ef3a9dd authored over 2 years ago by bielow <[email protected]>
Several sirius fixes (#6255)

* several sirius fixes

* remove obsolete processor parameter

a98ddd68a410e11eefd077d95f01340538a0ba06 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
fix tests

ec0f97110452df1c3c02fec3b3bc1ed9ba53e218 authored over 2 years ago by bielow <[email protected]>
Feature/awesome css (#6243)

* [feature] switched doxygen to use the "Doxygen Awesome" theme

* Change accent color to matc...

ea0316ed72842ff3918dfd393eda323879f7d554 authored over 2 years ago by Samuel Wein <[email protected]>
Two qvalues = w/ w/o isotope errors taking into account have been implemented.

2734c4a4656f123b63f13a2d06040934f2ee6556 authored over 2 years ago by kyowonjeong <[email protected]>
added MobilityPeakTest; made sure Peak2D is trivially copyable/movable

fb1ed96bb9b8a60ca4c7a3a99e91d55ffc24c8e9 authored over 2 years ago by bielow <[email protected]>
extend test for MSExperiment

6f65869bbf0ba2d9358be2c573c810493d85f90a authored over 2 years ago by bielow <[email protected]>
extend DTA2D test

10fcd81305a74004fefbd7635d2ed1ceada7167e authored over 2 years ago by bielow <[email protected]>
augment areaiterator test

6427077f4222f54e4c6a958ab1cff4c06917f39a authored over 2 years ago by bielow <[email protected]>
minor

c41eeadb18ad228e00e14b61962335862680c36c authored over 2 years ago by bielow <[email protected]>
lib files from refact_toppview

6f8b258d6fd757499aabb589459ca73d2a2761ec authored over 2 years ago by bielow <[email protected]>
undo

5f475956adee33e6e21d20e2baad13cd6534c692 authored over 2 years ago by bielow <[email protected]>
Merge branch 'refact_toppview' of https://github.com/cbielow/OpenMS into refact_toppview

e2b27cd9b5df990d099763a8246c369b7474be28 authored over 2 years ago by bielow <[email protected]>
Merge branch 'refact_toppview' of https://github.com/cbielow/OpenMS into refact_toppview

# Conflicts:
# src/openms/include/OpenMS/CHEMISTRY/EnzymaticDigestion.h
# src/openms/include/Ope...

b4222a0000aa54dabefd775dd464ec79f06e06cc authored over 2 years ago by bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into refact_toppview

91355b37619100f044b6572ee9b85fe8e9228172 authored over 2 years ago by bielow <[email protected]>
Merge pull request #6238 from OpenMS/mztab2stream

MzTab more switches to stream reader/writer

2903ede04322dc4ef94f871cc0c863bcf9f02f5a authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into refact_toppview

fedbfdd879c4b2d45047d799448d0778864a997b authored over 2 years ago by bielow <[email protected]>
Merge branch 'develop' into mztab2stream

59f6110bdcf178933e07504a160ac9518f7bb8b0 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Decoy implmentation done + unionbins removed. + GetCosine bug fixed.

ef8b46d36b29d65ae83ee8a0f9806d03a2c87b86 authored over 2 years ago by kyowonjeong <[email protected]>
merge

8684dfa58e7e49911494c22b1d1bf7d6f348939e authored over 2 years ago by bielow <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into refact_toppview

# Conflicts:
# contrib
# src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h
# src/openms/inclu...

7259b33eedaf32bef99fcfae28b857246133664e authored over 2 years ago by bielow <[email protected]>
Merge pull request #6254 from OpenMS/fix/GNPSMetaValueFile-pyopenms-test

[Fix] GNPSMetaValueFile pyopenms test

4466c8473a7f3b15467710dbdae03442c0973050 authored over 2 years ago by axelwalter <[email protected]>
ChromLayer, IonMobilityLayer and Painter2D

7f478ab759b11f508413032e9d4bc54a8e599971 authored over 2 years ago by bielow <[email protected]>
Merge branch 'develop' into mztab2stream

62d0170ddeb7ef95ecb187230beb4ad180477e36 authored over 2 years ago by Timo Sachsenberg <[email protected]>
forgot plfq tests

0cf965d8ec4320f8f2955490e19d874353709071 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update src/pyOpenMS/tests/unittests/test000.py

460c47ed49d5381533da5c9a492cdf656ef46608 authored over 2 years ago by Timo Sachsenberg <[email protected]>
update GNPSMetaValueFile pyopenms test

Added file descriptions with file names to the ConsensusMap. Required for the GNPS meta value file.

98edf66201168fbf0020f33b0b8495b50c2235c8 authored over 2 years ago by axelwalter <[email protected]>
update sirius jar file location for Linux

800ce3e7020178398a0a209f366bcfd254cbdbc5 authored over 2 years ago by axelwalter <[email protected]>
remove PeptideId level meta values from PEP columns

2ff2f30327867e9fe35b13b57e4b6f2c17d1caa0 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6248 from OpenMS/fix6081

pyopenms test - don't modify existing element (leads to side effects …

9c05ab5c4b451a423e43ca3aa54d9ad66a8c6a10 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update test000.py

3d5175a972010dfa12100896a2584c797abd162e authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update src/pyOpenMS/tests/unittests/test000.py

b872104c47110c11681fa3cdfa2f6b58d966b287 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update test000.py

00ba21fa83fb6794561369b85bf68e28f0ef1756 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into mztab2stream

5452cbbfe43b8ad857696abf91cebe3209fff7eb authored over 2 years ago by Timo Sachsenberg <[email protected]>
Update test000.py

16aeccbe91afa1e8a8179f55cc527f7709f5dc46 authored over 2 years ago by Timo Sachsenberg <[email protected]>
update name

f0bbd5648abb09966eb9e8683ed40ba6821ce6a2 authored over 2 years ago by Timo Sachsenberg <[email protected]>
pyopenms test - don't modify existing element (leads to side effects in combination with parallel execution)

fixes #6081
replaces https://github.com/OpenMS/OpenMS/pull/6223

6933550dc1b2fb198527c1e7a75476c061212d98 authored over 2 years ago by Timo Sachsenberg <[email protected]>
update SiriusAdapter tests

e4a505493e8b368bf6da59f1c8b67c81f70d5fca authored over 2 years ago by axelwalter <[email protected]>
set sirius version to 5.5.5

db76bf8104a9a48627a6f41fb58f1f2507b93b91 authored over 2 years ago by axelwalter <[email protected]>
update SiriusAdapter tests

b26f5f51ec5b0954f630ca7a30d2d07c9c42781e authored over 2 years ago by axelwalter <[email protected]>
add write-summaries flag to sirius command

90b721aa888e9f63844dca33c3df4456c24b648c authored over 2 years ago by axelwalter <[email protected]>
Merge pull request #6242 from cbielow/fix_windoc

fix windows installation instructions

bce47a158b1663a5a5bc4c284942f390472b4fd5 authored over 2 years ago by Chris Bielow <[email protected]>
Apply suggestions from code review

80622ed58cd2ad2f51c57222b2b0ea953705b6dd authored over 2 years ago by Chris Bielow <[email protected]>
fix windows installation instructions

d850739429aadedd27b874a3b4af8aaa9dd415de authored over 2 years ago by bielow <[email protected]>
Decoy mass implemented by exclusion list + precursor qvalue output.

f64a01c8e10a017193f07f24d00efee331e124cc authored over 2 years ago by kyowonjeong <[email protected]>
mztab exporter update

36d1c57d603cc14275b9c6d174cb94c18e0f99c3 authored over 2 years ago by Timo Sachsenberg <[email protected]>
more switches to stream reader/writer

24eb693cc42f872b1417b5983b3938490066cec0 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Decoy mass implemented by exclusion list.

7507f42b76d3441b7734f76ac513d3bfd0e85f98 authored over 2 years ago by kyowonjeong <[email protected]>
Merge pull request #6234 from jcharkow/feature/msConvertdiaPASEF

[IO] add support for diapasef msconvert mzml files

c21cfcd36e87e70fd77faac17444914fb28e50aa authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/msConvertdiaPASEF

c8eefc5f567e89142eceeac1f2b2f3bd3185eebc authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6229 from OpenMS/feature/noise_data_mzML

Support for noise data in TRFP conversion

ea193ca38f062b5f2f820488dafe5138fbd196fd authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6232 from OpenMS/removeMyriMatch

deprecate MyriMatch

944179f6912ca91f6c03e34a200922549f8e1175 authored over 2 years ago by JihyungKim <[email protected]>
Merge remote-tracking branch 'origin/develop' into removeMyriMatch

66db6860358155003837f7a2db2e02caaaf142e6 authored over 2 years ago by Timo Sachsenberg <[email protected]>
update SiriusAdapter tests

2dbb8171dcfaaa63bc0e58a6828cb602bb15c289 authored over 2 years ago by axelwalter <[email protected]>
update THIRDPARTY

9e19f9988c1ae349853ab489646c2d02d7b59822 authored over 2 years ago by axelwalter <[email protected]>
Merge pull request #6227 from OpenMS/year_change

changed copyright year number

16a93d924ac776a730a05ab9f68fd815f5e1599e authored over 2 years ago by JihyungKim <[email protected]>
Merge branch 'develop' into year_change

2fee8b68313655d4c95eca1b20a79ca7004c9066 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge remote-tracking branch 'origin/develop' into removeMyriMatch

6e548b0e3c06fcec670897b898ffddcf1ebd71e9 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/noise_data_mzML

155ef9649d790eee0f06064a7aa13e9c780b8ff3 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/msConvertdiaPASEF

f097cb7a7f8e2c63107dac68963f9c44c04d3409 authored over 2 years ago by Timo Sachsenberg <[email protected]>
[LOG] option to include query in DB error messages for .oms files

e9c1445d76787d4ee4320331ff8352791d53e137 authored over 2 years ago by Hendrik Weisser <[email protected]>
update THIRDPARTY

57b4204b479005958e778e844149aa69efa47890 authored over 2 years ago by axelwalter <[email protected]>
Crux related parts have been removed. Tested in M1 arm64 machine.

pepXML_v122.xsd Shema has been restored.

d636242f5f2c5dc0d516e7e415546b13aa059364 authored over 2 years ago by kyowonjeong <[email protected]>
Merge branch 'develop' into remove_crux

696925a449aa8ef5163dab796ffded3f56e4d7a8 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into refact_toppview

# Conflicts:
# contrib
# src/openms/include/OpenMS/KERNEL/RangeManager.h

4dca51a919ccb313b726fa3cafd285fcea28f7c7 authored over 2 years ago by bielow <[email protected]>
update contrib hash

0cb681ad3e2b43fd2be00ae97da895647a61bf34 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into removeMyriMatch

9ed75855a32cbdf30cbe758ff08a65729868298c authored over 2 years ago by Timo Sachsenberg <[email protected]>
update THIRDPARTY

6674830a9b319a55b1550725ab4de52bbe3ee6cf authored over 2 years ago by axelwalter <[email protected]>
[IO] add support for diapasef msconvert mzml files

MSConvert has a different label for the IM array of diaPASEF converted
files. Ensure that OpenSw...

8e507c05147b4673b68f7113d2a8683d27b9b9b2 authored over 2 years ago by Joshua <[email protected]>
update submodule THIRDPARTY

bdc802f0a2a12ef8004834db759a8876d8612d0f authored over 2 years ago by axelwalter <[email protected]>
Crux related parts have been removed. Tested in M1 arm64 machine.

5d1b6e25870c23879fc77aaed69ecdf5a76a05a4 authored over 2 years ago by kyowonjeong <[email protected]>
remove MyriMatch related files in THIRDPARTY

3fdac50581246a357931795c9eb20ad6bb39d387 authored over 2 years ago by JeeH-K <[email protected]>
Update third_party_tests.cmake

583c575aab3540f46d74cec51147f8d53fc3bbe3 authored over 2 years ago by Timo Sachsenberg <[email protected]>
deprecate MyrimatchAdapter

3e0271e867e6382a70123ade15f55c6bd3887bc8 authored over 2 years ago by JeeH-K <[email protected]>
Support for noise data in TRFP conversion

d9ef737f37b2245e466dbdf0a7a9323ed0b6d81b authored over 2 years ago by timosachsenberg <[email protected]>
Merge pull request #6209 from OpenMS/timosachsenberg-patch-1

[pyOpenMS] fix modifiedPeptideGenerator

992607472515a45887deb58bb87918e2eb75536b authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6228 from OpenMS/timosachsenberg-patch-2

Add files via upload

605388334313be9e5f6b637d98452764795956ce authored over 2 years ago by Timo Sachsenberg <[email protected]>
Add files via upload

659b67b70e91a8b8177404c4810d83222ad3e94b authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6226 from OpenMS/feature/update3rd

update 3rd party

44667372dcc2d93b568a328d81eb85cb4e23d920 authored over 2 years ago by Timo Sachsenberg <[email protected]>
update 3rd party

018670acfbf75b5b1bbc335240fb7b393fd31aa5 authored over 2 years ago by timosachsenberg <[email protected]>
changed copyright year number

bf1c6064857506a75cc6bc7fd700169713984e07 authored over 2 years ago by JeeH-K <[email protected]>
Merge pull request #5367 from OpenMS/feature/remove_omssa

remove OMSSA

1c87ee5a05c6433c83e753aef8807d8454fe27d2 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6208 from axelwalter/feature/TextExporter-meta-values

[Feature] TextExporter write ConsensusFeature meta values

4733d6dddf966dd41a188981b632a17f6ea4143d authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6221 from axelwalter/fix/GNPSExport-pyopenms-tests

[Fix] GNPSExport pyopenms tests

8fc115a892d91c1128bdbc340be1022cc89b2ff0 authored over 2 years ago by axelwalter <[email protected]>
Merge remote-tracking branch 'origin/develop' into feature/remove_omssa

ce04451d5534267bef7b00aec6e7db53874cf6d3 authored over 2 years ago by timosachsenberg <[email protected]>
fix tests

6712ac65980f98f5daee2ec9d8603f977689391c authored over 2 years ago by axelwalter <[email protected]>
Merge remote-tracking branch 'origin/develop' into feature/remove_omssa

7c239ed72e68c3953ddfae446dd3b73fac88b3ae authored over 2 years ago by timosachsenberg <[email protected]>
Merge branch 'develop' into feature/FLASHDeconvOnly

4b8bc17483871e286d784049697a39f67ddcb173 authored over 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6214 from cbielow/ion_mob

Ion Mobilogram support

1f0d14afbeff9f23c3eddb671320af9e01aa95e6 authored over 2 years ago by Chris Bielow <[email protected]>
Merge branch 'develop' into timosachsenberg-patch-1

5c3c2b164fc964a128aeb2dcedbb851deb3297c4 authored over 2 years ago by Timo Sachsenberg <[email protected]>
[DOC] update openswath ion mobility extraction message

* [DOC] update openswath ion mobility extraction message

Update messages to specify the unit ...

59139e3869975e121c13c0e82526e8bf9f0ef6cf authored over 2 years ago by Joshua Charkow <[email protected]>
Merge pull request #6219 from cbielow/fix_datetime

fix segfault when assigning to a moved-from DateTime

bba67f643312bf5c9b153b845775fc32213ce38d authored over 2 years ago by Chris Bielow <[email protected]>
Merge pull request #6218 from OpenMS/jpfeuffer-patch-1

PLFQ docs

f2fa3beaa49faeb4b5a43d5b4b5937a5e36c8548 authored over 2 years ago by Chris Bielow <[email protected]>
fix segfault when assigning to a moved-from DateTime

f88d5fd4c10d6ac394404ea2d1c3458749148766 authored over 2 years ago by bielow <[email protected]>
PLFQ docs

fixes #6213

cfe9119d05be54b74b59635b5b1da89fc1354803 authored over 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6217 from axelwalter/fix/gnps-export-docs

[Fix] add MapRTTransformer step in GNPSExpoert docs

3c327050328690d2b9277c13556b96dd4301197e authored over 2 years ago by Timo Sachsenberg <[email protected]>
individual trafoXML files and newest GNPSExport changes

890a04eba19a33a7aec407e4e746cc66cd96de32 authored over 2 years ago by axelwalter <[email protected]>