github.com/OpenMS/Tutorials issues | Ecosyste.ms: OpenCollective

Archive/Rename OpenMS/Tutorials repository?

tapaswenipathak opened this issue over 2 years ago

QC_with_OpenMS R View fails on linux when given absolute path

poshul opened this issue about 3 years ago

[FIX] Metabolite_DeNovoID WF

oliveralka opened this pull request about 3 years ago

Remove deprecated Excel writers

jpfeuffer opened this issue about 3 years ago

Split collection column missing for Molecule Type Cast

jpfeuffer opened this issue about 3 years ago

Updated workflows for OpenMS 2.7

oliveralka opened this pull request about 3 years ago

Necessary split collection column missing in almost all Metabo WFs and pictures

jpfeuffer opened this issue about 3 years ago

Update outdated figures

oliveralka opened this issue about 3 years ago

ProteomicsLFQ

oliveralka opened this issue about 3 years ago

SIRIUSAdapter + HighResPrecursorMassCorrector

oliveralka opened this issue about 3 years ago

[FIX] minted float env

oliveralka opened this pull request about 3 years ago

Placement of code examples via minted

oliveralka opened this issue over 3 years ago

[FIX] OSW Metabolomics

oliveralka opened this pull request over 3 years ago

[ADD] tutorial-ci

oliveralka opened this pull request over 3 years ago

[ADD] tutorial-ci

oliveralka opened this pull request over 3 years ago

Improve PyOpenMS Tutorial

oliveralka opened this issue over 3 years ago

TODOs for HTML version

jpfeuffer opened this issue over 3 years ago

[Feature] html version with tex4ht

jpfeuffer opened this pull request over 3 years ago

OpenMS 2.7: Update WF related to Sirius

oliveralka opened this pull request over 3 years ago

OpenSWATH for Metabolomics - DIAMetAlyzer

axelwalter opened this issue over 3 years ago

[Update] PhosphoID

oliveralka opened this pull request almost 4 years ago

Fixing bugs in Phosphoproteomics ID workflow

JeeH-K opened this pull request almost 4 years ago

Phosphoproteomics_ID

oliveralka opened this issue almost 4 years ago

Release/2.6.0

jpfeuffer opened this pull request about 4 years ago

Some of the OpenMS FileConverter requirements might be missing.

sorenwacker opened this issue about 4 years ago

Update handout with ThermoRawFileParser

Leon-Bichmann opened this pull request about 4 years ago

simple Phospho ID

timosachsenberg opened this pull request about 4 years ago

update OpenSwath.knwf for 2.6.0 release

Leon-Bichmann opened this pull request about 4 years ago

exporting results of identification and quantitation as a table

pavel-shliaha opened this issue about 4 years ago

[DRAFT] OpenSWATH for Metabolomics

oliveralka opened this pull request over 4 years ago

Draft version of an ID only Phosphoproteomics workflow

timosachsenberg opened this pull request over 4 years ago

proteomics lfq workflow with MSStats

timosachsenberg opened this pull request over 4 years ago

[DRAFT] ProteomicsLFQ, current with lfq_spikein_dilution

oliveralka opened this pull request over 4 years ago

update Versions

jpfeuffer opened this pull request over 4 years ago

fil missing in example data

johanneswellmann opened this issue almost 5 years ago

[FIX] general

oliveralka opened this pull request almost 5 years ago

Update handout.tex

timosachsenberg opened this pull request almost 5 years ago

GCB 2019

jpfeuffer opened this issue about 5 years ago

File missing in example data

jylanwhu opened this issue about 5 years ago

Workflow for isobaric analysis (untested)

oliveralka opened this pull request about 5 years ago

Identification / Quantification

oliveralka opened this pull request about 5 years ago

[Feature] Test Workflow-relative paths

jpfeuffer opened this pull request over 5 years ago

Boston19: retention time column not present after mzTabExporter in MetaboSpectrumMatcher workflow

jpfeuffer opened this issue over 5 years ago

Boston19: CometAdapter has problems with Temp files on Windows (with spaces in path?)

jpfeuffer opened this issue over 5 years ago

Boston19: XTandem scores cannot be fitted in consensus ID workflow

jpfeuffer opened this issue over 5 years ago

Boston 2019: joiner can't join list of retention times with retention time in metabolomics workflow

timosachsenberg opened this issue over 5 years ago

Metabolomics

oliveralka opened this issue over 5 years ago

Boston 2019: map aligner pose clustering crashes

timosachsenberg opened this issue over 5 years ago

remove consensusmap normalizer from iprg

timosachsenberg opened this issue over 5 years ago

Boston 2019

timosachsenberg opened this issue over 5 years ago

[Update] SiriusAdapter

oliveralka opened this pull request over 5 years ago

KNIME R Home issue (Linux, MacOS)

oliveralka opened this issue almost 6 years ago

Identification view: add how to save single spectrum in mzML

timosachsenberg opened this issue almost 6 years ago

pyopenms dir and help

Leon-Bichmann opened this pull request almost 6 years ago

[UPDATE] First changes EuBIC2019

oliveralka opened this pull request almost 6 years ago

Add date to handout

oliveralka opened this issue about 6 years ago

Update metabolomics.tex

FabianAicheler opened this pull request about 6 years ago

Update gettingstarted.tex

timosachsenberg opened this pull request about 6 years ago

[ADD] MAD

oliveralka opened this pull request about 6 years ago

Feature/um2018

timosachsenberg opened this pull request about 6 years ago

Update metabo KNIME workflow

mrurik opened this pull request about 6 years ago

initialized default values for new parameters

enetz opened this pull request about 6 years ago

Escape underscores

jpfeuffer opened this pull request about 6 years ago

General fixes

jpfeuffer opened this pull request about 6 years ago

[Update] metabolomics workflows 2.4.0

oliveralka opened this pull request about 6 years ago

Updated proteomics WFs to 2.4

jpfeuffer opened this pull request about 6 years ago

[DRAFT] Add SiriusAdapter (metabolomics)

oliveralka opened this pull request about 6 years ago

Feature/boston2018

timosachsenberg opened this pull request about 6 years ago

[FIX] update figure 13 and ref

oliveralka opened this pull request over 6 years ago

Fix/pwizard image

Leon-Bichmann opened this pull request over 6 years ago

add Proteomics megaworkflow; remove old subworkflows

FabianAicheler opened this pull request over 6 years ago

OMSAA 10 ppm to 5 ppm

FabianAicheler opened this pull request over 6 years ago

Metabo KNIME workflow picture is outdated

jpfeuffer opened this issue over 6 years ago

Loading MSStats missing

jpfeuffer opened this issue over 6 years ago

Figure 13 wrong naming of input ports

timosachsenberg opened this issue over 6 years ago

Update msConvert image

timosachsenberg opened this issue over 6 years ago

Boston18stuff

FabianAicheler opened this pull request over 6 years ago

Changes Tutorial iPRG

oliveralka opened this pull request over 6 years ago

R installation instructions at more sensible place

FabianAicheler opened this pull request over 6 years ago

very long nightly path needs more space -> deitemize

FabianAicheler opened this pull request over 6 years ago

PCA replace ggbiplot to ggfortify -> update import

FabianAicheler opened this pull request over 6 years ago

Draft for MSstats iPRG tutorial

oliveralka opened this pull request over 6 years ago

MSstats installation

mrurik opened this pull request over 6 years ago

Mention that you have to double-click a workflow after you import it

jpfeuffer opened this issue almost 7 years ago

Remove part where one needs to copy the spectral library in the plugin folder.