github.com/OpenMS/Tutorials commits | Ecosyste.ms: OpenCollective

Merge pull request #43 from FabianAicheler/patch-7

QC minor: wording

18770b822823816eb536eb7a176b5b645d27cb32 authored over 8 years ago by Mathias Walzer <[email protected]>

Merge pull request #39 from FabianAicheler/patch-2

Replaced QCCreator to QCCalculator; switched cv_acc and qp_att_acc; typos

0ee7d236393b7934ad28dd995be18efa9e72abe1 authored over 8 years ago by Mathias Walzer <[email protected]>

Mostly added/updated node paths, typos

fe4f3a5dfc6890f71c6760984b8a7243df05ee4d authored over 8 years ago by FabianAicheler <[email protected]>

wording

81d1262801f7fcba8af04b9a09c29dc84feeeb79 authored over 8 years ago by FabianAicheler <[email protected]>

fixed link to pyOpenMS docu

b46544c3b6846a83b3c7e956047088ccc53320a3 authored over 8 years ago by FabianAicheler <[email protected]>

fixed figure reference

044bcdd9b2ca7b37fa07c955a74932defd05786a authored over 8 years ago by FabianAicheler <[email protected]>

minor changes

Minor grammar
Category of Boxplot changed for Knime 3.1.2

d98184e4e63a14a269eaaa48e4a3d803838592b6 authored over 8 years ago by FabianAicheler <[email protected]>

Replaced mentions of QCCreator to QCCalculator; switched cv_acc and qp_att_acc; typos

5d8796615a620a45335a4978843b40aa20e6613a authored over 8 years ago by FabianAicheler <[email protected]>

Merge pull request #36 from FabianAicheler/patch-1

consensus workflow tutorial setting. specificity fix

709cd5f6f847f539c6d4ffd3c79626f43149e328 authored over 8 years ago by Timo Sachsenberg <[email protected]>

Set Xtandem Parameters similar to OMSSA

10ppm, maxcharge 5

a0ba76552aa78c86f93e53bf617aa1af492c636c authored over 8 years ago by FabianAicheler <[email protected]>

Set peptideindexer specificity to none for tutorial

In order to run through for the third file, we have to allow non-tryptic matches.

Also update...

bd11861bc70f0ac0517ca127e8eca0407ff67078 authored over 8 years ago by FabianAicheler <[email protected]>

Merge pull request #34 from jpfeuffer/feature/paperUpdateTroubleshoot

[Feature] Paper update troubleshoot

75ffd2d99640c799e8780d64ebb154c195518b8d authored over 8 years ago by Timo Sachsenberg <[email protected]>

Was missing bold fonts. Tried to include them automatically. Does not work yet. Had to install them locally.

cee7f0c6fd63a794365a67809c622328038b1023 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Added link to prerequisites.

1bff67d38978baaa671940e94e1aba6ade9eb651 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Forgot to add troubleshooting.tex all the time.

fd92132e0fc77e830d21e738aaeff6d42321fe60 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Added some links.

3669de64f0dfba977469cfb52231ae8f348091ff authored over 8 years ago by Julianus Pfeuffer <[email protected]>

updated handout. Added additional tex for troubleshooting.

3f8a7454d92d4b6df549abd4815311302315d8cf authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Updated to KNIME 3.1

35974aa6746988b024c30155f98ea1ef9f9f6176 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

[TUTORIAL] merged improvements from other tutorial branches

57c71008033c8755b64d30ac0daa900adafa8dfb authored over 8 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #22 from OpenMS/lastminutechanges

Lastminutechanges

6cac69e37c692c64f21018fb2aeb664b4a333731 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #23 from OpenMS/authors

Update myNotes.cls

fc69dc953e5989c8e70e8911d0d803bebd974a34 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Update myNotes.cls

be8f569e2ce1080659301aac47dece660b4f9545 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #21 from FabianAicheler/master

Minor style fixes

609cd139da9be05ba9a223284f0557c93de5e9e3 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'master' of https://github.com/OpenMS/UMTutorials

cdadc3d706c2dfebaf61dcd4c3f1b75faa4022fe authored over 9 years ago by Julianus Pfeuffer <[email protected]>

Minor corrections

688f09a976625358686f7ac0d2cee238433d9f66 authored over 9 years ago by Julianus Pfeuffer <[email protected]>

Minor style fixes

6c61c9db59b8b5206a2f031c10391a9ecb9ffcec authored over 9 years ago by FabianAicheler <[email protected]>

Merge pull request #20 from mwalzer/master

added note @ start of qc tutorial regarding the OpenMS version in KNIME ...

274e8e36d88918d1a6c15a18f55b876c8a180175 authored over 9 years ago by Timo Sachsenberg <[email protected]>

splitted another lengthy \note into a \note and a task to make it easier on the eye

45a5c3cf4f2f3d488393ce76d012ccacc0c91b4b authored over 9 years ago by mwalzer <[email protected]>

added note @ start of qc tutorial regarding the OpenMS version in KNIME (software site) and changed ending note to task

2168555c3e84f3c9ae7e69411ef5f4d8fbd9c206 authored over 9 years ago by mwalzer <[email protected]>

no message

eb25034c1687df36e4929d599a158dc849fe97e6 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #19 from mwalzer/master

R dependencies

67790174fc350f640c03bff1ef46bbbb5e0754c8 authored over 9 years ago by Timo Sachsenberg <[email protected]>

added R depencies section

9b74747f4effe8e02455636c9d23bcf76ec45d0d authored over 9 years ago by mwalzer <[email protected]>

added \label for \ref regarding R dependencies

044745244cd1c705527b3c69908d1f7bdd81c6a5 authored over 9 years ago by mwalzer <[email protected]>

Merge pull request #18 from FabianAicheler/feature/R_dependencies

R win binaries in KNIME install instruction; R package dependencies f…

4c788304c0ed3b9997a6f66070d4224dd5a47189 authored over 9 years ago by Timo Sachsenberg <[email protected]>

switched order for better reading flow

aab8a264ac1ff01a0cac2044bf5c8f6b8b69aea0 authored over 9 years ago by FabianAicheler <[email protected]>

R win binaries in KNIME install instruction; R package dependencies for metabolomics workflow (packages of other workflows allready in Binaries

b8e6b0833b51118edbeb0c16af5eb66ea70656a3 authored over 9 years ago by FabianAicheler <[email protected]>

Merge pull request #17 from FabianAicheler/master

Added RDKit to needed packages

13fa577d32a251aa6051a08f2634ed9eb36b6686 authored over 9 years ago by Timo Sachsenberg <[email protected]>

fixed conflict(line end)

a5e402161a133d12831411467118ba1a521cebcf authored over 9 years ago by FabianAicheler <[email protected]>

spellcheck; removed unused Marvin requirement for KNIME

40ee40feae7973659d82f7a6adbce4a6cab56094 authored over 9 years ago by FabianAicheler <[email protected]>

Update handout_content.tex

1493c3d32ccc30657bcef03ce1a4eb1feebb3e59 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Included (now correct)instructions for RDKit in KNIME

bb31e43d16cd71d39cd66563bf4fe9efb33201e8 authored over 9 years ago by FabianAicheler <[email protected]>

Added RDKit to needed packages

248ff370d8516e6c67dcb2ef0825ce1e8ad88549 authored over 9 years ago by FabianAicheler <[email protected]>

fixed line ending bug

a569453beb038726689fd4166f48976b3122b5f5 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #14 from liangoaix/proteinInference

some edit in the protein inference part

5aa3139b69b1b75a543a8f5b2c32527dc7895827 authored over 9 years ago by Timo Sachsenberg <[email protected]>

fix typo

1bd756bc908aa3e7cc0a674523a0d7da5ea3efda authored over 9 years ago by liangoaix <[email protected]>

slight change

08c36c60099b4502c8b406136bb97ca0abeeb3a6 authored over 9 years ago by liangoaix <[email protected]>

Merge remote-tracking branch 'upstream/master' into proteinInference

3d797f4338d0f7206d654fe9cf8d43e854c11198 authored over 9 years ago by liangoaix <[email protected]>

addressing comments

a0b9222347beb3ca2cdccd8103f26f2898a24bd8 authored over 9 years ago by liangoaix <[email protected]>

Merge pull request #16 from OpenMS/adaption-to-new-folder-structure

Update protein_inference.tex

2145f53775d31798e3a546baa1102f4130bbfec9 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Update protein_inference.tex

Adaption to new folder structure

ac525de5e3e92286fba7b4c168e0cb7194a8123d authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #15 from OpenMS/adapt_qc_dir

Update qualitycontrol.tex

b5d9d0d336237c1d69c3c8731d324ca771c68350 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Update qualitycontrol.tex

f24fb29252fc89167dbdba556050cc19828c87de authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #13 from PedrioliLab/openSWATH_2015

Few openSWATH specific changes

cefea18c46f1c754563d4ca080724a335f1ac47f authored over 9 years ago by Timo Sachsenberg <[email protected]>

addressing Timo's comments about protein inference part.

6d45e63d1549369d6e88e596bef25ea971b2f4ca authored over 9 years ago by liangoaix <[email protected]>

changed base file names to new folder structure

d8785cae78cc0114bd78ec3db848a4ac1722680e authored over 9 years ago by Timo Sachsenberg <[email protected]>

some fixes

95da74b2e07a8ac2cfa20ca7411ffcdc0218c46a authored over 9 years ago by Timo Sachsenberg <[email protected]>

Recreated workflow for new version of knime

45b0f535d20d0a929c738a04fb68cc0b0b23e564 authored over 9 years ago by ppatrick <[email protected]>

- Added remove_unannotated option in decoy generation

197b98941deced16d80714480d793270f73dbfc9 authored over 9 years ago by ppatrick <[email protected]>

added fonts to document

1c97f3a9feb1643894fbd254717da2cd1f93298d authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #12 from OpenMS/changed_authors

Changed authors

2c2214aba5e32555e28f6497564df9ed53f68e09 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge remote-tracking branch 'origin/master'

67340160ea34e2320534ee20153793d6c6f89bda authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #11 from OpenMS/isabell_pyopenms

Isabell pyopenms

9f0e0fb3a08617294e3eb9c7751ade7cdafb5519 authored over 9 years ago by Timo Sachsenberg <[email protected]>

removed handout.pdf

938f20d7682d984b38bff6610bbc40bc99101eed authored over 9 years ago by Timo Sachsenberg <[email protected]>

changes authors

f35c45ca2c840179b9325c7b8b42191b6ee4c52a authored over 9 years ago by Timo Sachsenberg <[email protected]>

added pdf to gitignore

3981c7b817a796bb4d0af00dbc8b260c65960ccc authored over 9 years ago by timosachsenberg <[email protected]>

Merge remote-tracking branch 'isabell/master'

Conflicts:
Handout/handout.pdf

7c272764c693e161a72d475f09b135f9e90c6462 authored over 9 years ago by timosachsenberg <[email protected]>

try to solve merge conflicts

1c69948bc8911112305b1d87323dfa1bc01b8aa3 authored over 9 years ago by Isabell Bludau <[email protected]>

don't use workflow

be8bd1741a549edd3e0c351b962d26c75ff56320 authored over 9 years ago by Isabell Bludau <[email protected]>

removed old metabolite analysis workflow

b78b1c8d417c196528cfeb2d942ead78b56a9d11 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #9 from hannesveit/tutorial/inference

[TUTORIAL] added protein inference, updated WFs

08e117d2e62e4a04027bfe1ed4dd3f8ca022f3d3 authored over 9 years ago by Timo Sachsenberg <[email protected]>

[TUTORIAL] added protein inference, updated WFs

73d0adc550b8a863a8f7028ae83359ffe327e6aa authored over 9 years ago by Johannes Veit <[email protected]>

pyOpenMS update and minor changes to OpenSWATH tutorial

a7db745409f703bf275bf59998ed5d7fa204ea2a authored over 9 years ago by Isabell Bludau <[email protected]>

Added R View (Table) and MetaNode explanation

483e7366b97f2361f018dc56950e727ef721b746 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Added TOPPView image

7a6a01ba3f5d3493d51cb10f70b3c36e6cd8b49a authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #7 from FabianAicheler/master

Added short motivation sections

8ac6480904796b9a31c4c23634d629cc5c05d7d1 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #4 from mwalzer/master

added revised qc tutorial and workflow, removed remnants of the old qc

1177ed672dee9ff37fb71edffcbfe3ba8326d044 authored over 9 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #6 from FabianAicheler/master

metabolomics tut section

0d87c6204368558bc4b33dd94aa69e05a78cc1dd authored over 9 years ago by Timo Sachsenberg <[email protected]>

Added short motivation sections

cb0dc659aab28a033f00b5f7d80f23bf38998c00 authored over 9 years ago by FabianAicheler <[email protected]>

metabolomics tut section

Updated workflow/images for KNIME 2.12. Added tutorial section on
visualization.

(More detailed...

c62a14ff58e08114328328caffc122c63759c4eb authored over 9 years ago by FabianAicheler <[email protected]>

added revised qc tutorial and workflow, removed remnants of the old qc

b9562368dd249231dd3311f3fd182df350f583b4 authored over 9 years ago by mwalzer <[email protected]>

Merge pull request #3 from FabianAicheler/master

small molecule analysis + visualization (this time on master..) workflow

8b6a7ca8ab633f148dec2c6f67a2bf3661eef10a authored over 9 years ago by Timo Sachsenberg <[email protected]>

small molecule analysis + visualization (this time on master..)

3a80cde2f2973f5dc0f0fc169b66093f54fb082f authored over 9 years ago by FabianAicheler <[email protected]>

Merge pull request #2 from hannesveit/tutorial/lfq

Tutorial/lfq

34249d09bf56ebd7f69f12b3a2553955e3fc308c authored over 9 years ago by Johannes Veit <[email protected]>

[TUTORIAL] added new LFQ WF with simple analysis

ba0d2cc8740e342b55ad5ea4881712f8be0840e8 authored over 9 years ago by Johannes Veit <[email protected]>

[TUTORIAL] extended LFQ tutorial

b6f2d7d708001819ac9239ccb0e78ae64f8e0691 authored over 9 years ago by Johannes Veit <[email protected]>

Merge pull request #1 from hannesveit/tutorial/add-workflows

[TUTORIAL] added workflows

5730f3e11c875b684936b99a376ce4584e335cf3 authored over 9 years ago by Timo Sachsenberg <[email protected]>

[TUTORIAL] added workflows

dfb9305804f3546ad56efb34e913d33d98c3904b authored over 9 years ago by Johannes Veit <[email protected]>

[TUTORIAL] adapted KNIME tutorial to 1.12

8569248f3d31ac05a5adc28fa8ac4860f4871b74 authored over 9 years ago by timosachsenberg <[email protected]>

[TUTORIAL] initial commit of handout latex code

7e7fcf26eac2ea7ab494b8925bf97c3d623dcefc authored over 9 years ago by timosachsenberg <[email protected]>

Initial commit

9d032f8d4cbad4df88620b5138ec2038bf4098c7 authored over 9 years ago by Timo Sachsenberg <[email protected]>