github.com/OpenMS/contrib commits | Ecosyste.ms: OpenCollective

Merge pull request #50 from mwalzer/update_licenses

Update licenses

65ee10a3d32e04022f5f6068480230e070e52821 authored about 7 years ago by Hannes Roest <[email protected]>

Create License.bsd.seqan.txt

d0cffc24867397f117399669a8995dc835fe9329 authored about 7 years ago by Mathias Walzer <[email protected]>

Create License.bsd.kissfft.txt

826d308ceb75b6cc4b6a9b9bcf54bb3d51fe4834 authored about 7 years ago by Mathias Walzer <[email protected]>

Delete License.epl-v10.txt

License available at https://www.eclipse.org/legal/epl-v10.html

f28119edbc82abfb8c36f008e4acb4077cf2c97f authored about 7 years ago by Mathias Walzer <[email protected]>

renamed epl v1 file

af560d3c0209f4a7f974ab335412599db268fb2a authored about 7 years ago by Mathias Walzer <[email protected]>

Create epl-v10.txt

cd175561dd93c69471a600852b41d358da8aa50a authored about 7 years ago by Mathias Walzer <[email protected]>

[PATCH] remove pedantic everywhere

227224f48362c3d6cdeddda2ce21d14df035e305 authored about 7 years ago by Hannes Roest <[email protected]>

Merge pull request #47 from hroest/feature/coin

Feature: fix coin build

c45748f3d171145ff357519379a4be60b98986bb authored about 7 years ago by Hannes Roest <[email protected]>

[FIX] remove pedantic

080afde18715aaad0d4504ee14ad5cc9acd42faa authored about 7 years ago by Hannes Roest <[email protected]>

[FIX] remove pedantic

configure patch
apply patch

505c407fe7c74a3fa0fcae5669578a4fa821b83d authored about 7 years ago by Hannes Roest <[email protected]>

Merge pull request #44 from hendrikweisser/visualstudio2017

Adaptations to allow building with Visual Studio 2017

d9e2b8c8d35577708f5b0b9dd24dc6f5e0c15ea9 authored over 7 years ago by jpfeuffer <[email protected]>

One more fix to the slns for VS2017

7891723a28641bc644ee5c1419b71140714f1443 authored over 7 years ago by jpfeuffer <[email protected]>

Fix incomplete archives

47c62c4bb26abcbe0718c2243c803a1b1a66e15f authored over 7 years ago by jpfeuffer <[email protected]>

Updated links and sha1 to new source packages

2ad5943567cdbdb6505f1b52bdb5cae2e17460f2 authored over 7 years ago by jpfeuffer <[email protected]>

Merge branch 'master' of https://github.com/OpenMS/contrib into visualstudio2017

29d30a322377ecd3dc75f13614e29ad5da2b49e0 authored over 7 years ago by Hendrik Weisser <[email protected]>

[BUILD] changed Boost version to 1.64, added Visual Studio 15 as a generator

ff2cd4cc6354d007f6d1cc93106aefd9eea6bc1f authored over 7 years ago by Hendrik Weisser <[email protected]>

Kissfft Integration (#43)

* [FEATURE] add kissfft library

* [FEATURE] merged master into kissfft

* [FIX] fixed sha1 ...

7fd75517481e5202b8dd4647638d5771aa18d6a3 authored over 7 years ago by pati-ni <[email protected]>

Merge pull request #42 from hroest/fix/override

[BUILD] add override

06bb51615ebf3026612865267745426e671ef5ca authored over 7 years ago by jpfeuffer <[email protected]>

[BUILD] add override

b57058f03def3f1422f1f737014dea9ba7619fcd authored over 7 years ago by Hannes Roest <[email protected]>

Merge remote-tracking branch 'upstream/master'

52d6c840ae8aad0c3b0f0f843e539236b7f0868f authored over 7 years ago by timosachsenberg <[email protected]>

[BUILD] bump up c++ and cmake min version to match OpenMS

c39138599237b7795c47a1f967c66564d7b87220 authored over 7 years ago by timosachsenberg <[email protected]>

Update README.md

654448b90cbcfcae6dd4b047384a4a127314d006 authored over 7 years ago by jpfeuffer <[email protected]>

Update README.md

5be12ac428a3a4175e88be1684d15cc98ec9b4c7 authored over 7 years ago by jpfeuffer <[email protected]>

[TEST] Use different strategy

Use DockerCloud triggers activated via Jenkins.
Clone Dockerfiles from OpenMS/dockerfiles

6f9fb40cb9eb466bcb629d3783858e445e7e0b2c authored over 7 years ago by jpfeuffer <[email protected]>

[Test] Dockerfile

957d55d4082322ebe20d873f3c179b1aff745839 authored over 7 years ago by jpfeuffer <[email protected]>

Update README.md

ed378a97527796857d07d79b8c82bee9c1be159e authored over 7 years ago by jpfeuffer <[email protected]>

Merge pull request #40 from cbielow/master

[FIX] sqlite builds with symbols now on VS2015

e753c445f30ada88b7e34b66ffacb18d53ac25d7 authored over 7 years ago by jpfeuffer <[email protected]>

[FIX] sqlite builds with symbols now on VS2015

ca034ce28faf1a003615ec22b2fafb237e6ff0cf authored over 7 years ago by Chris Bielow <[email protected]>

Merge pull request #37 from grosenberger/feature/sqlite

[FEATURE] SQLite

deedc7d7c9ca745319ffeb25f3e83e17964e41cb authored over 7 years ago by jpfeuffer <[email protected]>

Added patch for sqlite makefile to make sure Windows find is used.

9bfea56dc8a383212c8365a464473aa12884bdbb authored over 7 years ago by jpfeuffer <[email protected]>

Merge pull request #1 from hroest/feature/win_sqlite

[SQLITE] works under Windows

c1f2adb3680ce3adc73248c50e08d87809ec17f9 authored over 7 years ago by George Rosenberger <[email protected]>

[SQLITE] also copy lib

2499434a7c942c2e50789ed6d285b2d7fe169d01 authored over 7 years ago by Hannes Roest <[email protected]>

[SQLITE] works under Windows

b5351ee9237490a376a168ca07e7a7a6d4470c65 authored over 7 years ago by Hannes Roest <[email protected]>

patches removed

6419fa6a822d2d9fc87a79fe48c82083cf947c0f authored over 7 years ago by George Rosenberger <[email protected]>

fixed indentation

1f7bb0d16eb530314ac6e8569ca866a34a3e8fe0 authored over 7 years ago by Timo Sachsenberg <[email protected]>

fixed typo

4b733bc363425c1a340c098dca9342b028531889 authored over 7 years ago by Timo Sachsenberg <[email protected]>

[FEATURE] SQLite

f53c1ac3dd04a2f9d7e05c90d045e42e0288bd97 authored over 7 years ago by George Rosenberger <[email protected]>

Merge pull request #35 from cbielow/master

Make OpenMS install more user friendly for Windows

99083c0609fef6ae06ace03151691e4e9f3f91cb authored almost 8 years ago by Chris Bielow <[email protected]>

[FEATURE] add patch file for Qt installation on Windows

efdb10982f108c4961dd46652f652eff8d697481 authored almost 8 years ago by Chris Bielow <[email protected]>

[FEATURE] include Patch.exe for Windows into contrib. This version does not require admin elevation, since it has a manifest XML build in (details in README)

21f6a7fa0274d69a1d5e25c5f035bf80c01b7a7b authored almost 8 years ago by Chris Bielow <[email protected]>

[FIX] detect MSBuild and nmake at startup and not during lib build

675cc00187bb3962225c491c5a47fc8dbec65dfc authored almost 8 years ago by Chris Bielow <[email protected]>

Merge pull request #1 from OpenMS/master

update..

d673a9d7c6ac201dd8227cef86f92700f948d54b authored almost 8 years ago by Chris Bielow <[email protected]>

Merge pull request #22 from jpfeuffer/newerOSXDeployment

[FEATURE/FIX] Improve support for newer OSX versions and MSVC compilers (VS2015)

f6e8352676e4c9af9816b055864a2af4d2db34c0 authored almost 8 years ago by Chris Bielow <[email protected]>

undo changes

cc1ccdd1b6d16c4ca4970d4e10e6ca873cf93eef authored about 8 years ago by jpfeuffer <[email protected]>

Update CMakeLists.txt

fd4273e853207e1999c6ebcd2efc32e2725a361c authored about 8 years ago by jpfeuffer <[email protected]>

Reverted Xerces version change. Found the real error with iconv.

d4d5f644717cc1201ef98b60c78b2d5f4740972b authored about 8 years ago by jpfeuffer <[email protected]>

Allowing standard iconv on Mac with GCC

GCC cannot compile the mac libraries for UTF conversion.
But GNU iconv is not installed by defa...

5e1f973de6876e8ee9a724ba96864eedb47f1a4c authored about 8 years ago by jpfeuffer <[email protected]>

Messages should reflect the actual commands!!

f66a03d714d28f5dc6b7181df8fbdd618b5c264a authored about 8 years ago by jpfeuffer <[email protected]>

Trying newer Xerces. Does not compile with gcc on Mac.

0a7609d8674fa73eadd05ea642d378882dfe8948 authored about 8 years ago by jpfeuffer <[email protected]>

Changes to toolchains in boost.

195b1ecbf6da5b4a24a984592f3ce336101eabe0 authored about 8 years ago by jpfeuffer <[email protected]>

Update zlib.cmake

ad2312f24d71dcafc9c7fb47d69c1896cfcd349e authored about 8 years ago by jpfeuffer <[email protected]>

Update zlib.cmake

90d4055af9fcf4526a7c22eacbaf7472c1a7ba42 authored about 8 years ago by jpfeuffer <[email protected]>

Update zlib.cmake

218b110def5b89d16c01a0052bf246250a80aec2 authored about 8 years ago by jpfeuffer <[email protected]>

Update CMakeLists.txt

cbd28c947cf6b55c5de8734142a3bb18f002a80d authored about 8 years ago by jpfeuffer <[email protected]>

Remove workaround.

a2b8e2e953d53cffce473b245c1c03d4935aaaed authored about 8 years ago by jpfeuffer <[email protected]>

Updated zlib to make it easily work with clang

510b5ecf0721927d33a564e394580dd4e809ae7b authored about 8 years ago by jpfeuffer <[email protected]>

Update boost.cmake

2eff4000359850aca52d9cea320a6037c631a4b7 authored about 8 years ago by jpfeuffer <[email protected]>

Also add OSX_SYSROOT to GLPK make/configure system

b728e446e8591caffc1e0183793f8c305d44ee12 authored about 8 years ago by jpfeuffer <[email protected]>

Update README.md

02e28d76fe82c2690d9c13bc9d37f2f581a35371 authored about 8 years ago by jpfeuffer <[email protected]>

Specify toolset during boost config to REALLY use my compiler

a62ed2b3de5bd5b49cb842625774923f1f4ec0e4 authored about 8 years ago by jpfeuffer <[email protected]>

Remove more GSL

07f0777d5ec6e879612f772c93d1e8328d3c2e46 authored about 8 years ago by jpfeuffer <[email protected]>

Remove GSL

60f1d699218e93998679e94ba06826a052ce40aa authored about 8 years ago by jpfeuffer <[email protected]>

Delete gsl.cmake

b0ec0ab83021e533c754b77b4649a8034a93657c authored about 8 years ago by jpfeuffer <[email protected]>

Update boost.cmake

2fb4bff6d66d2ea9e2a9cd325cee1b2fcf0ce25a authored about 8 years ago by jpfeuffer <[email protected]>

Update zlib.cmake

88afb01568d06b8b8404cae7a228e36763587ee7 authored about 8 years ago by jpfeuffer <[email protected]>

DEFINED does not check emptyness

b4333175f8ea64eca63809581f275251f03cae77 authored about 8 years ago by jpfeuffer <[email protected]>

Corrected define checks

1054f940d17ad81c61d816f0ede4c0714ede7f23 authored about 8 years ago by jpfeuffer <[email protected]>

Use APPLE instead of SYSTEM_NAME

5e31f313be48cab06fe42ef251e0564e2b14433c authored about 8 years ago by jpfeuffer <[email protected]>

Indentation and messages in zlib build

ea793dff28458c6e526d3a429dccdc3974513422 authored about 8 years ago by jpfeuffer <[email protected]>

Update xercesc.cmake

b19b1611340856a1a49c07d0b0e8b9bcbd64e880 authored about 8 years ago by jpfeuffer <[email protected]>

Update CMakeLists.txt

6e4c454b967accf05dcaca72c741ec674a928e6f authored about 8 years ago by jpfeuffer <[email protected]>

[NOP] comment for later use

Small test

f863e489c8330ceaa80056f9d75782bca0be5b79 authored about 8 years ago by jpfeuffer <[email protected]>

Updated hash for new Eigen

d1976077ca3fdae3efc4ec76833176dc915aa3d3 authored about 8 years ago by jpfeuffer <[email protected]>

Updated Eigen version to 3.2.10 because of MSVC2015 bugs

b2ac1a859f5e1ba655c5be82e08a56cb3ce8d8a3 authored about 8 years ago by jpfeuffer <[email protected]>

Adapted package names according to renaming. Made sha1 more verbose.

8f0d33e223aa254416b8fd8a81637c0546e2b511 authored about 8 years ago by jpfeuffer <[email protected]>

Added support for VS2015

562df71b135f93bf36b42d866e65b39168813575 authored about 8 years ago by jpfeuffer <[email protected]>

Merge branch 'newerOSXDeployment' including hotfix of https://github.com/jpfeuffer/contrib into newerOSXDeployment

696ef02e2c83514f4ea80f5af891259923b8d282 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Forgot a statement in an if.

16443d0e438473cd2cf6c3cfd1f02ed08c65351a authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Updated OSX flags in all libraries and updated COINOR version. Only tested on MacOS

6f746c3748b079efef29d20f5df73884d13d82b1 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Adapted to new folder structure of boost.

55695d51dc930e41d26411d848a0a942fa973f40 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Improved logging for boost. Removed patch on Win for new CoinOR.

c4e07ae51faece029803153e9335e964f4b3539d authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Forgot to set new dir for new boost-

1c00c83d19bf7de5ffbb4a314eeeb64d8c9f4a26 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Included new boost source package for testing.

4f42607ddcd3347b529c2091fcadf39d327b8c95 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

[FEATURE/FIX] Improve support for newer OSX versions (also in compatibility mode)

45a2a56a30182dbad2b0e7d1af0de3354ff8b006 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Fixed wrong if statement about stdlib on OSX.

fdf815568cc3136d382d9e36836e702ce1f98fcd authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Adjusted sha1 of CoinOR archive according to changes in contrib-source

1d42db548d088c59a7cc86e49375000f839d2719 authored over 8 years ago by jpfeuffer <[email protected]>

Fixed an escaping bug for boost on linux.

b483aacf24342ceeafdca2bca3a42c78946fdae5 authored over 8 years ago by jpfeuffer <[email protected]>

Merge pull request #29 from jpfeuffer/hostingHotfix

[Hotfix] [skip ci] Hosting the sources on the FTP Server of FU

5c54339636ea128f822bdee3b53205ae55381ca5 authored over 8 years ago by jpfeuffer <[email protected]>

Added comment about where to find and update contrib sources.

4963f7a1da14359fb4d375564b92519c21473b21 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Git LFS was a bad idea, due to limited bandwidth. For maximum compatibility (SF fails because of redirects) I put the contrib on our FTP.

828f3fb1bae8d9f8d272834550daed07b71c493c authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Needed to change location of contrib again. Due to Git LFS bandwidth limit.

13ae1bf4983b9d678fbd7e64cea1cd2e4cb1741c authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #28 from cbielow/master

better error message avoiding nmake

e8f628db990010ae67fe2c466544b5ce50a846da authored over 8 years ago by Hannes Roest <[email protected]>

[DOC; Win32 only] fix minor typo

f14936a5111df330e73a016cce69d38ee90b9f8a authored over 8 years ago by Chris Bielow <[email protected]>

[DOC; Win32 only] verbose error message when trying to build the contrib using nmake

08e3a74f4f8123d5631878a89e014690c6187f10 authored over 8 years ago by Chris Bielow <[email protected]>

Forgot a statement in an if.

60478d758b049bf71ed80b007d492036090fd1b6 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Adapted to new folder structure of boost.

40bf9c4e0e890a877a86d2951f2ee0395ed8d7e6 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Forgot to set new dir for new boost-

c4e858d02d148bcc06864762bfff13ad867c18f3 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Included new boost source package for testing.

39c1a7721e7ab676e68d52c56e3187e93552d924 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Improved logging for boost. Removed patch on Win for new CoinOR.

9bfdfb1cd0696da6dec9a01c8b5708c513b31056 authored over 8 years ago by Julianus Pfeuffer <[email protected]>

Forgot to pull on other machine. Merge branch 'newerOSXDeployment' of https://github.com/jpfeuffer/contrib into newerOSXDeployment

2df0224a8dfd13fcc6cd0c5ccdcb1e12ccd0cbd4 authored over 8 years ago by Julianus Pfeuffer <[email protected]>