github.com/OpenMS/contrib commits | Ecosyste.ms: OpenCollective

Merge pull request #138 from OpenMS/timosachsenberg-patch-3

update eigen to 3.4.0

554551862ed1000e6b074d35cb887943e81f8606 authored 11 months ago by Timo Sachsenberg <[email protected]>

maybe patches not needed anymore

f1d12cdcfff54d15045ec247de77bae3a0ce41c1 authored 11 months ago by Timo Sachsenberg <[email protected]>

update eigen to 3.4.0

779f10cfa832a2863aee9186c473c5a4ad420c45 authored 11 months ago by Timo Sachsenberg <[email protected]>

Merge pull request #136 from radusuciu/master

Optimize Dockerfile

3a9eba4e45bc18e1e9954f96e9e59f32c9e9b123 authored 11 months ago by Timo Sachsenberg <[email protected]>

docker: install specific cmake version from github release

987e365823fcf3470f7d71687df89b9e984303b8 authored 11 months ago by Radu Suciu <[email protected]>

trim build dependencies in docker container

9349a5626c369c0dec273f781eaefb39f1fda842 authored 11 months ago by Radu Suciu <[email protected]>

turns out checking out the repo IS necessary

abcea4922cbe0cd397c0e0c72b2797faf4c55f8c authored 11 months ago by Radu Suciu <[email protected]>

fix spelling mistake

ce722ad16216f9883826b47ead5c21efa4871fa7 authored 11 months ago by Radu Suciu <[email protected]>

add buildx setup action

0bd99c2bb6ec17e9605bbd7d18e6edaf5edf0a9a authored 11 months ago by Radu Suciu <[email protected]>

add dockerignore

just ignoring workflows for now. Ignoring .git might be a good idea but I think some users of th...

7524587209aa5a41123023d8aecfd0ee3bb01824 authored 11 months ago by Radu Suciu <[email protected]>

pass in version as build arg so we can label the image

4b656dc472ef1218e5dd62d65066b67a913c87aa authored 11 months ago by Radu Suciu <[email protected]>

remove unused build args

ececde580ae0b28d0cfd748c20d33656d5997dec authored 11 months ago by Radu Suciu <[email protected]>

cache docker build via GHA

c5b93b3efbe9619527fe97544a96b93e41da2e4e authored 11 months ago by Radu Suciu <[email protected]>

remove unnecessary checkout step

the docker-push-action should handle this for us

31b6c0598f9fc03219c58e0f5b04bc301a3c9a11 authored 11 months ago by Radu Suciu <[email protected]>

update action versions

273d4c320ac2ad8adacf329d773af3e59d200334 authored 11 months ago by Radu Suciu <[email protected]>

set build dir using argument

for consistency with Dockerfile in main repo PR

bf4ff49e37dc042519fc2772e22fae348a70164d authored 11 months ago by Radu Suciu <[email protected]>

install dependencies in one step and copy code in as last step

798c0702a7449c346d0c64aa19b5f1c1549cf58c authored 12 months ago by Radu Suciu <[email protected]>

install eigen and coinor from apt instead of building from source

1df325b146184b272d962bcb12166173ab8fd8ab authored 12 months ago by Radu Suciu <[email protected]>

update hdf5 (#135)

Co-authored-by: timosachsenberg <[email protected]>

5e427652cf36043007c7366b5e97b445fe84a7a4 authored about 1 year ago by Timo Sachsenberg <[email protected]>

Update Dockerfile

69e61f28afe3209daae3182da03253c2fcabada8 authored over 1 year ago by Timo Sachsenberg <[email protected]>

removed obsolete gsl patches

04d64c6ae206a24cd3bf0d553022f58df86175eb authored over 1 year ago by Timo Sachsenberg <[email protected]>

without checkout

12405641412b4ea7ffd9c3680ee2b87adf006f2e authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Timosachsenberg patch 2 (#133)

* Update deploy-manylinux-docker.yml

* Update Dockerfile

1ab1389d357fac48d0e3fec427a7f973f609b239 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Update Dockerfile

e545bf0da77c9af1945c6311518d2e291b256b56 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Update Dockerfile

cb103a0e03342aea2accf5dade595af206c19edd authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Update deploy-manylinux-docker.yml

1345df558d5ead7c019e24e06e961389cc3e1ad0 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Update Dockerfile

f35f44d6bc6ecd40c3da48e35e8b9eb8e06a2a09 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

removed unused Dockerfile_min

521cb073b4aade43928df8137df93d5f4be45a9c authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Create readme.md

e3c3c427fcefa80a5677f038b63876ca2e9fa05f authored almost 2 years ago by Timo Sachsenberg <[email protected]>

proper file input

513af2b2a9dd4b37c51cf005888f3302a14b142e authored almost 2 years ago by Timo Sachsenberg <[email protected]>

another attempt

0ee87a0af544ccf159d06869971148d1da241492 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

new attempt with context

3d98f377947997f8f43278637684d0d38cfcdf0f authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Fix/deploy docker (#132)

* checkout repo to get context

* checkoutcontext

* lower/upper case?

* test

e68abfe72ccd6337a1dfa04bffc735ae0af505fd authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Fix/deploy docker (#131)

* checkout repo to get context

* checkoutcontext

* lower/upper case?

33b5b837ba42e28069856b981742ca2c57c26e58 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

checkout repo to get context (#130)

* checkout repo to get context

* checkoutcontext

39932d7707a981886ca57067d5ba4b8622bd8765 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

remove OpenMS checkout from contrib (#128)

* remove OpenMS checkout from contrib

* Update dockerfiles/pyopenms/manylinux/Dockerfile

*...

dfb65f7a1e989c4a77aa4eb2c35725d1fbf52d45 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #127 from OpenMS/timosachsenberg-patch-1

update manylinux action

62f035906b7f3559fa7c4b288f80692966991fe7 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Update .github/workflows/deploy-manylinux-docker.yml

94c3051cfdd1f8b4e7f15d5c09e7d8ae2626494a authored almost 2 years ago by Timo Sachsenberg <[email protected]>

create many linux dockerfile

82016e0c608e01e3e410d6523b167c3bd5aa7b3d authored almost 2 years ago by Timo Sachsenberg <[email protected]>

update manylinux action

@jpfeuffer is the "context" correct?

8a099f724b1da34d4526ec2cc275467f753d9b33 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #126 from OpenMS/docker_contrib_files_added

Dockerfiles from OpenMS/dockerfiles have been moved to contrib/docker…

f8c07ad6d7636493c27b08e8362c8c4324c45ca4 authored almost 2 years ago by Timo Sachsenberg <[email protected]>

'master' branch name has been modified into 'develop'

e0445da524f1ad4b503c27416fc1af92b26f83bf authored almost 2 years ago by KyowonJeong <[email protected]>

context: dockerfiles/contrib --> context: dockerfiles as @jpfeuffer corrected.

d93f41cec644d688f0bacaca8e41998fd910214f authored almost 2 years ago by KyowonJeong <[email protected]>

Dokerfiles Checkout part in deploydocker.yml has been removed.

8cf4b3a3229d310177544aad1e59774526652167 authored almost 2 years ago by KyowonJeong <[email protected]>

Merge pull request #125 from cbielow/fix_xercesICU

Fix xerces icu

068bd508704bba5e28e3268cf75e49f855100ea8 authored almost 2 years ago by Chris Bielow <[email protected]>

Dockerfiles from OpenMS/dockerfiles have been moved to contrib/dockerfiles

a896ece84a25925b2d64646f30ca2ca4d568ee02 authored almost 2 years ago by KyowonJeong <[email protected]>

fix log variables

f13a4f0c8ef38d68934d60d7bd40a6d103c972e4 authored almost 2 years ago by Chris Bielow <[email protected]>

windows: disable search for ICU since it leads to compile errors (see https://github.com/OpenMS/OpenMS/issues/6639)

37302ec747bd8b0f81f1c44bc34f08335dbc3da3 authored almost 2 years ago by Chris Bielow <[email protected]>

Merge branch 'master' of https://github.com/OpenMS/contrib

0a2ba19d7997acf55ca6d126f6771c85e0ed8ad1 authored almost 2 years ago by Chris Bielow <[email protected]>

Merge pull request #124 from OpenMS/poshul-patch-1

Remove set-output from actions

8a2bd3af2268057ed870476c7fabb9611b13f057 authored almost 2 years ago by Samuel Wein <[email protected]>

Update deploy-manylinux-docker.yml

c356fc193f50e53284d0a9485bb915c394074575 authored almost 2 years ago by Samuel Wein <[email protected]>

Update deploydocker.yml

8d0fe961a82dc5060db2c417af2df855af8b3828 authored almost 2 years ago by Samuel Wein <[email protected]>

Update deploydocker.yml

96fac7c811a573c4132db1cda437f84264ad38bb authored almost 2 years ago by Samuel Wein <[email protected]>

Merge pull request #121 from OpenMS/jpfeuffer-patch-1

Do not use zstd/lzma in boost

3e86337c82707abef1f254d84be6794795def925 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update boost.cmake

fixes #112

79d4897d43ad35887505c582539cf0587aa8d3c7 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

forgot one remove

4c3b1c48165055564f22e7330ff1b106b5345f69 authored about 2 years ago by Timo Sachsenberg <[email protected]>

remove sqlite dependency

9d21ec234261c014623d9e43678ec679e2ce4902 authored about 2 years ago by Timo Sachsenberg <[email protected]>

remove wildmagic dependency

3740278e0a9fe096eccff9310a4a0d834f2a8f67 authored about 2 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #120 from OpenMS/update-actions

Update deploy-manylinux-docker.yml

41a2d93c9da94cbcca5a1f4be26d64c27e2be0c7 authored about 2 years ago by Samuel Wein <[email protected]>

Update main.yml

0ef99177e230af1e4aedc57c97f27f2b53adf097 authored about 2 years ago by Samuel Wein <[email protected]>

Update main.yml

ab62e1c07eff79eb28444eee42c7307326b322de authored about 2 years ago by Samuel Wein <[email protected]>

Update deploydocker.yml

21f727eb3c7b342f98ce8e0bd09c119e9af78d22 authored about 2 years ago by Samuel Wein <[email protected]>

Update deploy-manylinux-docker.yml

9a6d9073073ea20af986f1c11cbf5f611d0f3d84 authored about 2 years ago by Samuel Wein <[email protected]>

Update CMakeLists.txt

1136fce7f9d882553812344cbfb31dbc0d6bcb0c authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #119 from OpenMS/feat/buildtypeList

[FEATURE] Allow list of buildtypes

f8b3d7574d691d437c562b5f3b153e5b4df4d6e5 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

[FEATURE] Allow list of buildtypes

de624faa0acee5e890f71e437cce4c16949f0c0d authored about 2 years ago by jpfeuffer <[email protected]>

Merge pull request #117 from OpenMS/restructLicnsDelWM5

[Restructure] Licenses and remove WM5 from ALL

43f9d1732255f568fa2fbe2253e7bd1a18661943 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

remove

38017b37e3610d663ea794f910b9cb32bd9ac04d authored about 2 years ago by jpfeuffer <[email protected]>

Merge branch 'master' into restructLicnsDelWM5

12fea2e0cf4953cbee5712f77bf8efe479483e53 authored about 2 years ago by jpfeuffer <[email protected]>

Merge pull request #118 from OpenMS/jpfeuffer-patch-1

remove GLPK from default ALL target

89c67e8632e4f0ab64629a9887b67a5c646b9159 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

Update License.txt

Add OpenMP and QT licenses

70e8bc42178224531eb2aa3499b1e7fccc24cf03 authored about 2 years ago by Samuel Wein <[email protected]>

remove GLPK from default ALL target

2b463ebfeee1e55412bbc31cf10f5411438a27d6 authored about 2 years ago by Julianus Pfeuffer <[email protected]>

[Restructure] Licenses and ALL target (del. WM5)

4240e628b1bcf22bcb483514de99eda0ac506a92 authored about 2 years ago by jpfeuffer <[email protected]>

Update deploy-manylinux-docker.yml

0866c5edc8b85dbe6a7a894df88ec575479993ae authored over 2 years ago by Julianus Pfeuffer <[email protected]>

Update deploy-manylinux-docker.yml

a0b28cb0612bdaf8d2d7a1c2028f71d0bd9c110c authored over 2 years ago by Julianus Pfeuffer <[email protected]>

Update deploydocker.yml

4b05c9aa148f87b1838901836442bb8510da6dd9 authored over 2 years ago by Julianus Pfeuffer <[email protected]>

[Update] Archive URL after infrastructure move

f90ad2686ec88cd85974630d8b9c7fe62c0f41c3 authored over 2 years ago by Julianus Pfeuffer <[email protected]>

Update README.md

307093274d38f4947ab17bf43a4e348f12e292e2 authored over 2 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #114 from cbielow/fix_coin

slimmer CoinMP package without the precompiled libs

ebd65d7f9bd2519659707ab9ba13eba81f26f002 authored over 2 years ago by Timo Sachsenberg <[email protected]>

slimmer CoinMP package without the precompiled libs

3d5502901d12cadd3bbf770d51427836b046a533 authored over 2 years ago by bielow <[email protected]>

Merge branch 'master' of https://github.com/OpenMS/contrib

a775caccc3b36125e0f5216cf33dc3c827383f44 authored over 2 years ago by bielow <[email protected]>

Merge pull request #113 from cbielow/fix_vs22

fix CoinOr to support VS2022

e8b815360dfa09755e3bc03927ffd6948d187596 authored over 2 years ago by Chris Bielow <[email protected]>

fix CoinOr to support VS2022

a197fe1580c6043e7f5e24841a566ea3bfe655a4 authored over 2 years ago by bielow <[email protected]>

Merge pull request #111 from Waschi97/update/VS22support

[Update] boost and coinor for VS22

4b7fc07c7e5a7e5e2bcb3c41b11fe9dc4651ee42 authored over 2 years ago by Julianus Pfeuffer <[email protected]>

updated coinor archive SHA1

40031c2ef097054ff3d3a08dc842cf244eaba023 authored over 2 years ago by Tom Waschischeck <[email protected]>

added new coinor archive, set hashes for coinor and boost

563dac387794a78c32a8a81fade7f2a618a56457 authored over 2 years ago by Tom Waschischeck <[email protected]>

nop

8a02109092faadc085c7af7bf79a782090fb076c authored over 2 years ago by Timo Sachsenberg <[email protected]>

Update deploy-manylinux-docker.yml

1d15394fdc1c9cae90e03a57f271ff987c00b116 authored over 2 years ago by Timo Sachsenberg <[email protected]>

fix path

39ca1fef6c42a10cbd4de1e93eb5f6c947580370 authored over 2 years ago by Timo Sachsenberg <[email protected]>

Create deploy-manylinux-docker.yml

367afc69923ef97fbfd5e6779f88ed8a01b74e59 authored over 2 years ago by Timo Sachsenberg <[email protected]>

minor comment updates

f177f1e1419f1384b7ea53c9fbdef85ef7752cb8 authored over 2 years ago by Tom Waschischeck <[email protected]>

contrib adapted for newer boost version (local)

32be3d963961267abc047e3d10017390db425cc9 authored almost 3 years ago by Tom Waschischeck <[email protected]>

current release boost added (local)

540a0883dcb7d22fdb603f88fcb11baabab27366 authored almost 3 years ago by Tom Waschischeck <[email protected]>

VS22 Generator and tool chain added

610d0f35cce5e6f2cded8ee19b225e7bbac01edc authored almost 3 years ago by Tom Waschischeck <[email protected]>

reverting changes

359673e7612ae4c3d36e477c8ebdeaf32fdefac4 authored almost 3 years ago by Tom Waschischeck <[email protected]>

remove linking to zlib in boost (apparently not needed?)

714c9b5a2aeb8eec4698a8d17671a9cdb44ced73 authored almost 3 years ago by timosachsenberg <[email protected]>

update path in patch

bfa9ab9d488cf52b79fe722144f1d6d609b41a01 authored almost 3 years ago by timosachsenberg <[email protected]>

patch zlib to only build either static or dynamic

ed44a822f271bba4ae6a913330294737c6de48e4 authored almost 3 years ago by timosachsenberg <[email protected]>

allow vs 17 in contrib

81e3aa81bebba72425829e4a4911db8e1a87cc88 authored almost 3 years ago by Julianus Pfeuffer <[email protected]>

update cmake to 3.23 for vs

d17205104b510beef509c3d1a469032e19aa817d authored almost 3 years ago by Julianus Pfeuffer <[email protected]>